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Concise Results
Standard Results
Full Results
hydrogenase 1 large subunit [Escherichia coli str. K-12 substr. MG1655]
Protein Classification
Ni/Fe-hydrogenase large subunit ( domain architecture ID 10013445 )
Ni/Fe-hydrogenase large subunit similar to Escherichia coli hydrogenase-1 large chain (HYD1) which may have a role in hydrogen cycling during fermentative growth
List of domain hits
Name
Accession
Description
Interval
E-value
PRK10170
PRK10170 Ni/Fe-hydrogenase large subunit;
1-597
0e+00
Ni/Fe-hydrogenase large subunit;
Pssm-ID: 182281
Cd Length: 597
Bit Score: 1338.90
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 1 MSTQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCT 80
Cdd:PRK10170 1 MSTQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCT 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 81 GVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSP 160
Cdd:PRK10170 81 GVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSP 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 161 GYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCA 240
Cdd:PRK10170 161 GYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCA 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 241 INIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLL 320
Cdd:PRK10170 241 INIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLL 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 321 MPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKA 400
Cdd:PRK10170 321 MPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKA 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 401 PRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNG 480
Cdd:PRK10170 401 PRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNG 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 481 NLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIP 560
Cdd:PRK10170 481 NLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIP 560
570 580 590
....*....|....*....|....*....|....*..
gi 16128939 561 EQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQVR 597
Cdd:PRK10170 561 EQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQVR 597
Name
Accession
Description
Interval
E-value
PRK10170
PRK10170 Ni/Fe-hydrogenase large subunit;
1-597
0e+00
Ni/Fe-hydrogenase large subunit;
Pssm-ID: 182281
Cd Length: 597
Bit Score: 1338.90
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 1 MSTQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCT 80
Cdd:PRK10170 1 MSTQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCT 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 81 GVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSP 160
Cdd:PRK10170 81 GVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSP 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 161 GYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCA 240
Cdd:PRK10170 161 GYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCA 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 241 INIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLL 320
Cdd:PRK10170 241 INIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLL 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 321 MPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKA 400
Cdd:PRK10170 321 MPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKA 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 401 PRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNG 480
Cdd:PRK10170 401 PRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNG 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 481 NLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIP 560
Cdd:PRK10170 481 NLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIP 560
570 580 590
....*....|....*....|....*....|....*..
gi 16128939 561 EQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQVR 597
Cdd:PRK10170 561 EQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQVR 597
NiFeSe_Hases
pfam00374 Nickel-dependent hydrogenase;
54-582
0e+00
Nickel-dependent hydrogenase;
Pssm-ID: 459789
Cd Length: 495
Bit Score: 901.08
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 54 RG L EIIL Q GRDPRDAWAF VE RICGVCT G VHALASV Y A I EDA I GIK V P D NA NI IRN IMLAT L WC HDH L VHFY Q L AGM DW I D 133
Cdd:pfam00374 1 RG I EIIL K GRDPRDAWAF TQ RICGVCT T VHALASV R A V EDA L GIK I P L NA QL IRN LIQGA L FV HDH I VHFY H L HAL DW V D 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 134 V LD ALKADP R KTS E LAQS L S S WPKSSPGYF FD VQ NR LKKFVE G GQLG I F R NGYWGHP Q YKLPPEANL MGF AHYLEAL DF Q 213
Cdd:pfam00374 81 V VS ALKADP K KTS K LAQS I S D WPKSSPGYF KA VQ DK LKKFVE S GQLG P F A NGYWGHP A YKLPPEANL IAV AHYLEAL EM Q 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 214 R EIV KIHA V FGGKNPHP N - WI VGG MP CAI NI desgavga V N M ERL NL V Q S I I TRTA DF INN V MI PD A LAI GQ F N K P W SE I 292
Cdd:pfam00374 161 R KAA KIHA I FGGKNPHP Q s LV VGG VT CAI DL -------- L N P ERL AE V K S L I DEVR DF VEQ V YL PD V LAI AS F Y K D W AK I 232
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 293 G T G LS dk CV LSYG A FP D ia N D FGEK S L L M PGG AVI NGD FNN V L P vdl VDP QQVQ E F V D H A WY R Y pnd QV G R HP FD G I T D P 372
Cdd:pfam00374 233 G G G VG -- NF LSYG D FP L -- D D LDGT S F L F PGG VIL NGD LSK V H P --- VDP DKIT E D V T H S WY K Y --- DK G L HP YE G E T E P 302
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 373 W Y NPG D VK G sdtniqqlneqe R YSWIKAPR WR G NA MEVGPLAR T L IA Y H KG DAATV E S VD RMMSA L N LP LSGIQ STLGR I 452
Cdd:pfam00374 303 N Y TGP D ED G ------------ K YSWIKAPR YD G KP MEVGPLAR V L VG Y A KG NPEIK E L VD QFLKK L G LP PEALF STLGR T 370
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 453 LC RA H E AQWA A GKLQYFF D K L MT N L K N G NLA T astek WE P A TWP T E CR GVGFTEAPRGAL G HW AA I R DGKI DL YQ C VVP T 532
Cdd:pfam00374 371 AA RA I E TKLI A DLMLEWL D E L VA N I K A G DTS T ----- FN P P TWP K E AK GVGFTEAPRGAL S HW IV I K DGKI EN YQ A VVP S 445
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 16128939 533 TWNASPRD P KGQ I G A YEAAL MN T KM A I PEQPLEILRT L HSFDPCLAC ST H 582
Cdd:pfam00374 446 TWNASPRD A KGQ P G P YEAAL IG T PV A D PEQPLEILRT I HSFDPCLAC AV H 495
HyaB
COG0374 Ni,Fe-hydrogenase I large subunit [Energy production and conversion];
19-597
0e+00
Ni,Fe-hydrogenase I large subunit [Energy production and conversion];
Pssm-ID: 440143
Cd Length: 539
Bit Score: 875.70
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 19 L V V DPITRIEGH M R C EV NI n D QN V I T N A V S C GTMFRG L EIIL Q GRDPRDAWA FVE RICGVCT GV HALASV Y A I EDA I GI K 98
Cdd:COG0374 1 I V I DPITRIEGH L R I EV EV - D DG V V T D A W S S GTMFRG F EIIL K GRDPRDAWA ITQ RICGVCT TS HALASV R A L EDA L GI E 79
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 99 V P D NA NI IRN IM LA TLWC HDHLVHFY Q L AGM DW I DV LD ALKADP R KT sel A Q SLS S WPK S SP G YF F DVQ N RLK K FVE G GQ 178
Cdd:COG0374 80 P P P NA RL IRN LI LA AENL HDHLVHFY H L FAL DW V DV VY ALKADP K KT --- A A SLS P WPK A SP P YF A DVQ D RLK P FVE S GQ 156
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 179 LGIF R NGYWGHP Q YKLPPE A NLM GF AHYLEAL DF QRE I V K IHA V FGGK N PHP - N WIV GG MP CAI N idesgavgavn M ERL 257
Cdd:COG0374 157 LGIF A NGYWGHP A YKLPPE V NLM AG AHYLEAL EA QRE A V E IHA I FGGK W PHP s N LVP GG VT CAI T ----------- L ERL 225
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 258 NLVQ SI ITRTA DF INN V MI PD A LA IGQ F N K PWSEI G T GL S dk CV LSYG A FPD IA N DF G EK s L L M P G G AVI NGD FNN V L PV 337
Cdd:COG0374 226 ARLK SI LDEFR DF VEQ V YL PD L LA FAR F Y K DLAKL G G GL G -- NF LSYG D FPD PD N GW G GA - R L F P P G VIL NGD LGK V H PV 302
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 338 D lvd P QQVQ E F V D H A WY R ypn D QVGR HP FD G I T D P W Y npgdvkgsdtni QQ L NEQER YSW I KAPR WR G NA MEVGPLAR T L 417
Cdd:COG0374 303 D --- P DKIT E D V T H S WY E --- D DGPL HP WE G E T E P D Y ------------ TD L DKDGK YSW V KAPR YD G KP MEVGPLAR Q L 364
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 418 I AY HK G DAATVES VD RMMS AL N LP LSGIQ STLGR ILC RA H EA QWA A GKLQYFF D K L MT N L K N G NLA T astek W EP A TWP T 497
Cdd:COG0374 365 V AY AA G HPLIKDL VD AALK AL G LP PEALF STLGR TAA RA L EA ALL A DAMEKWL D A L VP N I K A G DTK T ----- F EP P TWP K 439
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 498 E CR GVG F TEAPRGALGHW AA I R DGKI DL YQ C VVPTTWNASPRD P KGQ I G A YEAAL MN T KM A I PE Q PLE I LRT LH SFDPCL 577
Cdd:COG0374 440 E AK GVG L TEAPRGALGHW IV I K DGKI AN YQ I VVPTTWNASPRD A KGQ P G P YEAAL IG T PV A D PE K PLE V LRT VR SFDPCL 519
570 580
....*....|....*....|
gi 16128939 578 AC ST HV LGDD G S EL IS V Q V R 597
Cdd:COG0374 520 AC AV HV IDPK G K EL LR V K V L 539
NiFeSe_hydrog
NF033181 nickel-dependent hydrogenase large subunit; Members of this family are the large subunit of ...
17-591
6.46e-171
nickel-dependent hydrogenase large subunit; Members of this family are the large subunit of the periplasmic nickel-dependent hydrogenase. Some members contain a selenocysteine residue.
Pssm-ID: 467982
Cd Length: 509
Bit Score: 495.31
E-value: 6.46e-171
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 17 RRL V V DP I TRIEGH MRC EV NI n DQNVI T N A V S C GTMFRG L EIIL Q GRDPRDA WAFVE RICGVC TGV H AL AS VY A IE DA I G 96
Cdd:NF033181 2 QKI V I DP V TRIEGH LKI EV EV - ENGKV T D A W S S GTMFRG F EIIL R GRDPRDA TYITQ RICGVC PTS H GT AS SL A LD DA F G 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 97 I KVP D N AN IIRN IM L ATLWCHD H LV HFY Q L AGM D WI D VLDALKADPRKTSE LA qslsswpksspgyffd V QNRLK K F V EG 176
Cdd:NF033181 81 A KVP A N GR IIRN LI L GANYLQS H IL HFY H L SAL D YV D GPAVAQYKGNDPGL LA ---------------- V KDKIV K L V AA 144
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 177 G QLGI F RNG Y WG h PQ Y K L P - PE ANLMGF AHYL E AL DFQREIVKIH A V FGGK N PH PNW IV G G mpcainides G AVGAVNM E 255
Cdd:NF033181 145 G DTAP F TPR Y EP - DD Y R L N d PE VVTTAV AHYL K AL EMRAKAHEMS A I FGGK M PH QSS IV V G ---------- G VTELPTK E 213
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 256 RLNLVQ S IITRTA DFI N NV MI PD A LA I G Q - FNKPWSEI G T G L sd KCV LSYG A FP d IANDFGE K S LL MPG G AVIN GD f NN V 334
Cdd:NF033181 214 KIEAFR S RLAEVI DFI E NV YL PD V LA F G T g YLLDLFQA G V G G -- GNY LSYG G FP - LDDSGKD K N LL FKP G VYTD GD - GK V 289
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 335 L P vdl V DP QQVQ E F V DHA WY RYPND qv G R HP FD G I T D P wynpgdvkgsdtniq QLNEQER YS WI KAPR WR G NA MEVGPLA 414
Cdd:NF033181 290 M P --- L DP SKIT E D V KYS WY KDSTN -- G L HP YE G V T V P --------------- DPDKKGA YS FV KAPR YD G KP MEVGPLA 349
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 415 R TLIAYH KG D aatves V D RMMSALNL P L sgiq S TLG R ILC RA H E AQWA A GKLQYFF D K L MTNLKN G NLATA stekwepat 494
Cdd:NF033181 350 R MWVMQP KG L ------ P D IVKLYGIK P F ---- S VVA R HAA RA L E TKLV A KAMLKWL D E L EPGMPT G TPREI --------- 410
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 495 w P TECR G V G F TEAPRGALGHW AA I RDG KI DL YQ C VVPTTWNASPRD P KG QI G AY E A AL MNTKMAI P EQ P LEIL R TLH SFD 574
Cdd:NF033181 411 - P ASAQ G M G L TEAPRGALGHW IK I KNH KI EN YQ M VVPTTWNASPRD D KG VR G PV E Q AL IGVPVPD P DN P INVV R VVR SFD 489
570
....*....|....*..
gi 16128939 575 PCLAC ST H VLGDDGS E L 591
Cdd:NF033181 490 PCLAC AV H LIDPETN E I 506
Name
Accession
Description
Interval
E-value
PRK10170
PRK10170 Ni/Fe-hydrogenase large subunit;
1-597
0e+00
Ni/Fe-hydrogenase large subunit;
Pssm-ID: 182281
Cd Length: 597
Bit Score: 1338.90
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 1 MSTQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCT 80
Cdd:PRK10170 1 MSTQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCT 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 81 GVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSP 160
Cdd:PRK10170 81 GVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSP 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 161 GYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCA 240
Cdd:PRK10170 161 GYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCA 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 241 INIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLL 320
Cdd:PRK10170 241 INIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLL 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 321 MPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKA 400
Cdd:PRK10170 321 MPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKA 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 401 PRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNG 480
Cdd:PRK10170 401 PRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNG 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 481 NLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIP 560
Cdd:PRK10170 481 NLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIP 560
570 580 590
....*....|....*....|....*....|....*..
gi 16128939 561 EQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQVR 597
Cdd:PRK10170 561 EQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQVR 597
NiFeSe_Hases
pfam00374 Nickel-dependent hydrogenase;
54-582
0e+00
Nickel-dependent hydrogenase;
Pssm-ID: 459789
Cd Length: 495
Bit Score: 901.08
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 54 RG L EIIL Q GRDPRDAWAF VE RICGVCT G VHALASV Y A I EDA I GIK V P D NA NI IRN IMLAT L WC HDH L VHFY Q L AGM DW I D 133
Cdd:pfam00374 1 RG I EIIL K GRDPRDAWAF TQ RICGVCT T VHALASV R A V EDA L GIK I P L NA QL IRN LIQGA L FV HDH I VHFY H L HAL DW V D 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 134 V LD ALKADP R KTS E LAQS L S S WPKSSPGYF FD VQ NR LKKFVE G GQLG I F R NGYWGHP Q YKLPPEANL MGF AHYLEAL DF Q 213
Cdd:pfam00374 81 V VS ALKADP K KTS K LAQS I S D WPKSSPGYF KA VQ DK LKKFVE S GQLG P F A NGYWGHP A YKLPPEANL IAV AHYLEAL EM Q 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 214 R EIV KIHA V FGGKNPHP N - WI VGG MP CAI NI desgavga V N M ERL NL V Q S I I TRTA DF INN V MI PD A LAI GQ F N K P W SE I 292
Cdd:pfam00374 161 R KAA KIHA I FGGKNPHP Q s LV VGG VT CAI DL -------- L N P ERL AE V K S L I DEVR DF VEQ V YL PD V LAI AS F Y K D W AK I 232
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 293 G T G LS dk CV LSYG A FP D ia N D FGEK S L L M PGG AVI NGD FNN V L P vdl VDP QQVQ E F V D H A WY R Y pnd QV G R HP FD G I T D P 372
Cdd:pfam00374 233 G G G VG -- NF LSYG D FP L -- D D LDGT S F L F PGG VIL NGD LSK V H P --- VDP DKIT E D V T H S WY K Y --- DK G L HP YE G E T E P 302
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 373 W Y NPG D VK G sdtniqqlneqe R YSWIKAPR WR G NA MEVGPLAR T L IA Y H KG DAATV E S VD RMMSA L N LP LSGIQ STLGR I 452
Cdd:pfam00374 303 N Y TGP D ED G ------------ K YSWIKAPR YD G KP MEVGPLAR V L VG Y A KG NPEIK E L VD QFLKK L G LP PEALF STLGR T 370
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 453 LC RA H E AQWA A GKLQYFF D K L MT N L K N G NLA T astek WE P A TWP T E CR GVGFTEAPRGAL G HW AA I R DGKI DL YQ C VVP T 532
Cdd:pfam00374 371 AA RA I E TKLI A DLMLEWL D E L VA N I K A G DTS T ----- FN P P TWP K E AK GVGFTEAPRGAL S HW IV I K DGKI EN YQ A VVP S 445
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 16128939 533 TWNASPRD P KGQ I G A YEAAL MN T KM A I PEQPLEILRT L HSFDPCLAC ST H 582
Cdd:pfam00374 446 TWNASPRD A KGQ P G P YEAAL IG T PV A D PEQPLEILRT I HSFDPCLAC AV H 495
HyaB
COG0374 Ni,Fe-hydrogenase I large subunit [Energy production and conversion];
19-597
0e+00
Ni,Fe-hydrogenase I large subunit [Energy production and conversion];
Pssm-ID: 440143
Cd Length: 539
Bit Score: 875.70
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 19 L V V DPITRIEGH M R C EV NI n D QN V I T N A V S C GTMFRG L EIIL Q GRDPRDAWA FVE RICGVCT GV HALASV Y A I EDA I GI K 98
Cdd:COG0374 1 I V I DPITRIEGH L R I EV EV - D DG V V T D A W S S GTMFRG F EIIL K GRDPRDAWA ITQ RICGVCT TS HALASV R A L EDA L GI E 79
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 99 V P D NA NI IRN IM LA TLWC HDHLVHFY Q L AGM DW I DV LD ALKADP R KT sel A Q SLS S WPK S SP G YF F DVQ N RLK K FVE G GQ 178
Cdd:COG0374 80 P P P NA RL IRN LI LA AENL HDHLVHFY H L FAL DW V DV VY ALKADP K KT --- A A SLS P WPK A SP P YF A DVQ D RLK P FVE S GQ 156
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 179 LGIF R NGYWGHP Q YKLPPE A NLM GF AHYLEAL DF QRE I V K IHA V FGGK N PHP - N WIV GG MP CAI N idesgavgavn M ERL 257
Cdd:COG0374 157 LGIF A NGYWGHP A YKLPPE V NLM AG AHYLEAL EA QRE A V E IHA I FGGK W PHP s N LVP GG VT CAI T ----------- L ERL 225
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 258 NLVQ SI ITRTA DF INN V MI PD A LA IGQ F N K PWSEI G T GL S dk CV LSYG A FPD IA N DF G EK s L L M P G G AVI NGD FNN V L PV 337
Cdd:COG0374 226 ARLK SI LDEFR DF VEQ V YL PD L LA FAR F Y K DLAKL G G GL G -- NF LSYG D FPD PD N GW G GA - R L F P P G VIL NGD LGK V H PV 302
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 338 D lvd P QQVQ E F V D H A WY R ypn D QVGR HP FD G I T D P W Y npgdvkgsdtni QQ L NEQER YSW I KAPR WR G NA MEVGPLAR T L 417
Cdd:COG0374 303 D --- P DKIT E D V T H S WY E --- D DGPL HP WE G E T E P D Y ------------ TD L DKDGK YSW V KAPR YD G KP MEVGPLAR Q L 364
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 418 I AY HK G DAATVES VD RMMS AL N LP LSGIQ STLGR ILC RA H EA QWA A GKLQYFF D K L MT N L K N G NLA T astek W EP A TWP T 497
Cdd:COG0374 365 V AY AA G HPLIKDL VD AALK AL G LP PEALF STLGR TAA RA L EA ALL A DAMEKWL D A L VP N I K A G DTK T ----- F EP P TWP K 439
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 498 E CR GVG F TEAPRGALGHW AA I R DGKI DL YQ C VVPTTWNASPRD P KGQ I G A YEAAL MN T KM A I PE Q PLE I LRT LH SFDPCL 577
Cdd:COG0374 440 E AK GVG L TEAPRGALGHW IV I K DGKI AN YQ I VVPTTWNASPRD A KGQ P G P YEAAL IG T PV A D PE K PLE V LRT VR SFDPCL 519
570 580
....*....|....*....|
gi 16128939 578 AC ST HV LGDD G S EL IS V Q V R 597
Cdd:COG0374 520 AC AV HV IDPK G K EL LR V K V L 539
PRK10467
PRK10467 hydrogenase 2 large subunit; Provisional
17-596
0e+00
hydrogenase 2 large subunit; Provisional
Pssm-ID: 182482
Cd Length: 567
Bit Score: 542.06
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 17 R R LVV DP I TRIEGH M R CEVN I ND q N V ITN A VSC GTM F RG L E I I LQG RDPRDAW AF V E RICGVCT GV HA LA SV Y A I E D A IG 96
Cdd:PRK10467 3 Q R ITI DP V TRIEGH L R IDCE I EN - G V VSK A WAS GTM W RG M E E I VKN RDPRDAW MI V Q RICGVCT TT HA IS SV R A A E S A LN 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 97 I K VP D NA NI IRNI M LA TLWC HDH L VHFYQL AGM DW I D VLD AL K ADP R K T S ELAQSL S S W PKS S PGY F FD VQN RL K KF V EG 176
Cdd:PRK10467 82 I D VP V NA QY IRNI I LA AHTT HDH I VHFYQL SAL DW V D ITS AL Q ADP T K A S AMLKGV S T W HLN S AEE F TK VQN KI K DL V AS 161
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 177 GQLGIF R NGYWGHP QY KLPPE A NL MGF AHYL E AL DF QR EIVKIH A VF GGK N PH - P N WI VGG MPCA IN I D esg AV G AV N M E 255
Cdd:PRK10467 162 GQLGIF A NGYWGHP AM KLPPE V NL IAV AHYL Q AL EC QR DANRVV A LL GGK T PH i Q N LA VGG VANP IN L D --- GL G VL N L E 238
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 256 RL NLVQ S I I TRTA DF INN V MIP D ALA I GQ F NKP W SEI G T G LSD kcvls Y GAF P DIAN D FGEK S L L M PGG AVI N G D FNNVL 335
Cdd:PRK10467 239 RL MYIK S F I DKLS DF VEQ V YKV D TAV I AA F YPE W LTR G K G AVN ----- Y LSV P EFPT D SKNG S F L F PGG YIE N A D LSTYR 313
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 336 P V - DLV D P --- QQV QE FVD HAWY R ypn D QVGRH P FD G I T D P W Y N pgdvkgsdtniq QLNEQER YSW I K A P RWR G NAM EVG 411
Cdd:PRK10467 314 P I t SHS D E yli KGI QE SAK HAWY K --- D EAPQA P WE G T T I P A Y D ------------ GWSDDGK YSW V K S P TFY G KTV EVG 378
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 412 PLA RT L IAYHK G DAA T VESVDRM ------ MSALN L PLSGIQ STLGRI LC R AHEAQWAAGK LQ YFFDK L M TN LKN G N lata 485
Cdd:PRK10467 379 PLA NM L VKLAA G RES T QNKLNEI vaiyqk LTGNT L EVAQLH STLGRI IG R TVHCCELQDI LQ NQYSA L I TN IGK G D ---- 454
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 486 s TEKWEPATW P -- T E CR GVGF T EAPRG A L G HW AA I R DG K I DL YQ C VVP T TWN AS PR DPKGQI G A YE AA L MN T KM A I P EQ P 563
Cdd:PRK10467 455 - HTTFVKPNI P at G E FK GVGF L EAPRG M L S HW MV I K DG I I SN YQ A VVP S TWN SG PR NFNDDV G P YE QS L VG T PV A D P NK P 533
570 580 590
....*....|....*....|....*....|...
gi 16128939 564 LE IL RT L HSFDPC L AC ST HV LGD DG S E LI SV Q V 596
Cdd:PRK10467 534 LE VV RT I HSFDPC M AC AV HV VDA DG N E VV SV K V 566
NiFeSe_hydrog
NF033181 nickel-dependent hydrogenase large subunit; Members of this family are the large subunit of ...
17-591
6.46e-171
nickel-dependent hydrogenase large subunit; Members of this family are the large subunit of the periplasmic nickel-dependent hydrogenase. Some members contain a selenocysteine residue.
Pssm-ID: 467982
Cd Length: 509
Bit Score: 495.31
E-value: 6.46e-171
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 17 RRL V V DP I TRIEGH MRC EV NI n DQNVI T N A V S C GTMFRG L EIIL Q GRDPRDA WAFVE RICGVC TGV H AL AS VY A IE DA I G 96
Cdd:NF033181 2 QKI V I DP V TRIEGH LKI EV EV - ENGKV T D A W S S GTMFRG F EIIL R GRDPRDA TYITQ RICGVC PTS H GT AS SL A LD DA F G 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 97 I KVP D N AN IIRN IM L ATLWCHD H LV HFY Q L AGM D WI D VLDALKADPRKTSE LA qslsswpksspgyffd V QNRLK K F V EG 176
Cdd:NF033181 81 A KVP A N GR IIRN LI L GANYLQS H IL HFY H L SAL D YV D GPAVAQYKGNDPGL LA ---------------- V KDKIV K L V AA 144
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 177 G QLGI F RNG Y WG h PQ Y K L P - PE ANLMGF AHYL E AL DFQREIVKIH A V FGGK N PH PNW IV G G mpcainides G AVGAVNM E 255
Cdd:NF033181 145 G DTAP F TPR Y EP - DD Y R L N d PE VVTTAV AHYL K AL EMRAKAHEMS A I FGGK M PH QSS IV V G ---------- G VTELPTK E 213
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 256 RLNLVQ S IITRTA DFI N NV MI PD A LA I G Q - FNKPWSEI G T G L sd KCV LSYG A FP d IANDFGE K S LL MPG G AVIN GD f NN V 334
Cdd:NF033181 214 KIEAFR S RLAEVI DFI E NV YL PD V LA F G T g YLLDLFQA G V G G -- GNY LSYG G FP - LDDSGKD K N LL FKP G VYTD GD - GK V 289
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 335 L P vdl V DP QQVQ E F V DHA WY RYPND qv G R HP FD G I T D P wynpgdvkgsdtniq QLNEQER YS WI KAPR WR G NA MEVGPLA 414
Cdd:NF033181 290 M P --- L DP SKIT E D V KYS WY KDSTN -- G L HP YE G V T V P --------------- DPDKKGA YS FV KAPR YD G KP MEVGPLA 349
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 415 R TLIAYH KG D aatves V D RMMSALNL P L sgiq S TLG R ILC RA H E AQWA A GKLQYFF D K L MTNLKN G NLATA stekwepat 494
Cdd:NF033181 350 R MWVMQP KG L ------ P D IVKLYGIK P F ---- S VVA R HAA RA L E TKLV A KAMLKWL D E L EPGMPT G TPREI --------- 410
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 495 w P TECR G V G F TEAPRGALGHW AA I RDG KI DL YQ C VVPTTWNASPRD P KG QI G AY E A AL MNTKMAI P EQ P LEIL R TLH SFD 574
Cdd:NF033181 411 - P ASAQ G M G L TEAPRGALGHW IK I KNH KI EN YQ M VVPTTWNASPRD D KG VR G PV E Q AL IGVPVPD P DN P INVV R VVR SFD 489
570
....*....|....*..
gi 16128939 575 PCLAC ST H VLGDDGS E L 591
Cdd:NF033181 490 PCLAC AV H LIDPETN E I 506
FrhA
COG3259 Coenzyme F420-reducing hydrogenase, alpha subunit [Energy production and conversion];
16-585
1.90e-42
Coenzyme F420-reducing hydrogenase, alpha subunit [Energy production and conversion];
Pssm-ID: 442490
Cd Length: 458
Bit Score: 158.78
E-value: 1.90e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 16 G RR LVV DP I TR I EGH MRCEVNIN D QNVITN A VSCGTMF RG L E II L Q GR DPRDAWAFVE RICG V C TGV H A LAS VY A I E D A I 95
Cdd:COG3259 2 T RR ITI DP V TR V EGH GKITIFLD D DGKVKD A RLHIVEP RG F E KF L E GR PYEEVPDITA RICG I C PVA H H LAS AK A L E A A F 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 96 G IKV P DN A NII R NIMLATL W CHD H LV HF YQ LA GM D WI --- D VL DAL K AD P rkts EL A - QS L sswpksspgyffdvqn RL K 171
Cdd:COG3259 82 G VEP P PT A RKL R RLLYCGE W IQS H AL HF FF LA AP D FL gyr N VL GLA K KH P ---- EL V k RG L ---------------- RL R 141
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 172 K F veg G Q lgifrngywghpqyklppeanlmgfahylealdfqr EI V kih AVF GG KNP HP NW - IV GG MPC A INID E sgavg 250
Cdd:COG3259 142 K L --- G N ------------------------------------ EI I --- ELL GG RAI HP VN a VP GG FSK A PSEE E ----- 174
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 251 avnmerlnl VQSIIT R TAD finnv MIPD A LAIGQFN K PWSEIGTGLS D kcvlsyga FPD IAND F geksllmpggavingd 330
Cdd:COG3259 175 --------- RDELLE R LEE ----- ALEF A EEAVDLF K DLFLKNKDEV D -------- FPD FDTE F ---------------- 216
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 331 fnnvlp VD LVD P qqvqefvdhawyrypndqv G RH P F - DG --- I T D PWYNPGDVKGS D TN i QQLN E - QERY S WI K A P RWR G 405
Cdd:COG3259 217 ------ MG LVD D ------------------- G EY P L y DG rlr I V D SDGKILEFDPA D YL - DHIA E e VVPW S YA K F P YLK G 270
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 406 NAME ---- VGPLAR TLIAYHKGDAATV E SVDRMMSALNL P lsg IQSTLGRILC R AH E aqwaagk LQ Y FFDKLMTN L K ng N 481
Cdd:COG3259 271 LGYD giyr VGPLAR LNLNDDILTPLAQ E ALEEFGLRFGP P --- VHNPFAYHWA R LI E ------- IL Y AAERAIEL L E -- D 338
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 482 LATASTEKWE P AT w P TECR GVG FT EAPRG A L G H WAAI - R DG K I DLYQCV VPTT W N ---------- ASPRDPK G qi G AYEA 550
Cdd:COG3259 339 PEITGPPLRV P VG - P RAGE GVG VV EAPRG T L I H HYTV d E DG L I TKANLI VPTT Q N naaieedvrq VAKALLD G -- G EPDE 415
570 580 590
....*....|....*....|....*....|....*.
gi 16128939 551 A L M N T - K MAI peqpleil R tlh SF DPC LA C S TH V LG 585
Cdd:COG3259 416 G L L N R v E MAI -------- R --- AY DPC IS C A TH A LG 440
PRK06075
PRK06075 NADH-quinone oxidoreductase subunit D;
28-111
1.23e-03
NADH-quinone oxidoreductase subunit D;
Pssm-ID: 180385 [Multi-domain]
Cd Length: 392
Bit Score: 41.29
E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128939 28 E G HM R CEVNI n D QN V ITN A VSC - G TMF RG L E IILQG R DPRD A WAFVE R ICG V CTGVHAL A SVY A I E DAI GI K VP DN A NI I 106
Cdd:PRK06075 19 H G VL R LILEL - D GE V VVR A DPH i G YLH RG T E KLAEY R TYLQ A IPYFD R LDY V SPMNNEH A YCL A V E KLL GI E VP ER A QY I 97
....*
gi 16128939 107 R NIM L 111
Cdd:PRK06075 98 R VLF L 102
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
