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Conserved domains on  [gi|16129037|ref|NP_415592|]
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flagellar basal-body rod protein FlgC [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

flagellar basal body rod protein FlgC( domain architecture ID 11481481)

flagellar basal body rod protein FlgC forms, together with FlgB and FlgF the proximal portion of the central rod at the core of the flagellar organelle's basal body

Gene Ontology:  GO:0071973

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
flgC PRK05681
flagellar basal body rod protein FlgC; Reviewed
 1-134 2.20e-79

flagellar basal body rod protein FlgC; Reviewed


:

Pssm-ID: 235556 [Multi-domain]  Cd Length: 135  Bit Score: 230.10  E-value: 2.20e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129037    1 MALLNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRAKQVVFQVNAAPGAATGGVKVADVIESQAPDKLVYEP 80
Cdd:PRK05681   1 MSLFSSFNIAGSGLSAQSQRLNVISSNIANADSTAAPDGDPYRRKQVVFAAELDPGQGTGGVKVAKIVEDQSPFKLVYDP 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 16129037   81 GNPLADAKGYVKMPNVDVVGEMVNTMSASRSYQANVEVLNTVKSMMLKTLTLGQ 134
Cdd:PRK05681  81 GHPAADAKGYVKYPNVNVVVEMVDMISASRSYEANVEVLNAAKSMMQKTLTIGQ 134
 
Name Accession Description Interval E-value
flgC PRK05681
flagellar basal body rod protein FlgC; Reviewed
 1-134 2.20e-79

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 235556 [Multi-domain]  Cd Length: 135  Bit Score: 230.10  E-value: 2.20e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129037    1 MALLNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRAKQVVFQVNAAPGAATGGVKVADVIESQAPDKLVYEP 80
Cdd:PRK05681   1 MSLFSSFNIAGSGLSAQSQRLNVISSNIANADSTAAPDGDPYRRKQVVFAAELDPGQGTGGVKVAKIVEDQSPFKLVYDP 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 16129037   81 GNPLADAKGYVKMPNVDVVGEMVNTMSASRSYQANVEVLNTVKSMMLKTLTLGQ 134
Cdd:PRK05681  81 GHPAADAKGYVKYPNVNVVVEMVDMISASRSYEANVEVLNAAKSMMQKTLTIGQ 134
FlgC COG1558
Flagellar basal body rod protein FlgC [Cell motility];
1-134 1.41e-74

Flagellar basal body rod protein FlgC [Cell motility];


Pssm-ID: 441166 [Multi-domain]  Cd Length: 135  Bit Score: 218.06  E-value: 1.41e-74
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129037   1 MALLNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRAKQVVFQ-VNAAPGAATGGVKVADVIESQAPDKLVYE 79
Cdd:COG1558   1 MSLFSAFDIAGSGLTAQRLRLNVIASNLANANSTRTSDGGPYRRKQVVFEaVLDRAGSGAAGVRVAGIVEDDSPFRLVYD 80

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*
gi 16129037  80 PGNPLADAKGYVKMPNVDVVGEMVNTMSASRSYQANVEVLNTVKSMMLKTLTLGQ 134
Cdd:COG1558  81 PGHPDADADGYVRYPNVNVVEEMVDMISASRSYEANVEVINTAKSMLLKTLEIGR 135
FlgC TIGR01395
flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components ...
 4-134 5.59e-64

flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components of bacterial flagella that share a domain described by pfam00460. FlgC is part of the basal body. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 130462 [Multi-domain]  Cd Length: 135  Bit Score: 191.03  E-value: 5.59e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129037     4 LNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRAKQVVFQVNAAP----GAATGGVKVADVIESQAPDKLVYE 79
Cdd:TIGR01395   1 FSIFNVSASALSAQRVRMNVVSSNLANADSTRTPAGDPYRRRRPVFEAELFQdrasRPGGSGVKVAKIVEDDSPFKLVYD 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 16129037    80 PGNPLADAKGYVKMPNVDVVGEMVNTMSASRSYQANVEVLNTVKSMMLKTLTLGQ 134
Cdd:TIGR01395  81 PTHPDADAEGYVKMPNVNVVEEMVDMIEASRSYEANVQVFNTAKSMFLRTLEIGR 135
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 87-132 2.38e-10

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 53.04  E-value: 2.38e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 16129037    87 AKGYVKMPNVDVVGEMVNTMSASRSYQANVEVLNTVKSMMLKTLTL 132
Cdd:pfam06429  29 QQGYLEGSNVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQL 74
 
Name Accession Description Interval E-value
flgC PRK05681
flagellar basal body rod protein FlgC; Reviewed
 1-134 2.20e-79

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 235556 [Multi-domain]  Cd Length: 135  Bit Score: 230.10  E-value: 2.20e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129037    1 MALLNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRAKQVVFQVNAAPGAATGGVKVADVIESQAPDKLVYEP 80
Cdd:PRK05681   1 MSLFSSFNIAGSGLSAQSQRLNVISSNIANADSTAAPDGDPYRRKQVVFAAELDPGQGTGGVKVAKIVEDQSPFKLVYDP 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 16129037   81 GNPLADAKGYVKMPNVDVVGEMVNTMSASRSYQANVEVLNTVKSMMLKTLTLGQ 134
Cdd:PRK05681  81 GHPAADAKGYVKYPNVNVVVEMVDMISASRSYEANVEVLNAAKSMMQKTLTIGQ 134
FlgC COG1558
Flagellar basal body rod protein FlgC [Cell motility];
1-134 1.41e-74

Flagellar basal body rod protein FlgC [Cell motility];


Pssm-ID: 441166 [Multi-domain]  Cd Length: 135  Bit Score: 218.06  E-value: 1.41e-74
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129037   1 MALLNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRAKQVVFQ-VNAAPGAATGGVKVADVIESQAPDKLVYE 79
Cdd:COG1558   1 MSLFSAFDIAGSGLTAQRLRLNVIASNLANANSTRTSDGGPYRRKQVVFEaVLDRAGSGAAGVRVAGIVEDDSPFRLVYD 80

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*
gi 16129037  80 PGNPLADAKGYVKMPNVDVVGEMVNTMSASRSYQANVEVLNTVKSMMLKTLTLGQ 134
Cdd:COG1558  81 PGHPDADADGYVRYPNVNVVEEMVDMISASRSYEANVEVINTAKSMLLKTLEIGR 135
FlgC TIGR01395
flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components ...
 4-134 5.59e-64

flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components of bacterial flagella that share a domain described by pfam00460. FlgC is part of the basal body. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 130462 [Multi-domain]  Cd Length: 135  Bit Score: 191.03  E-value: 5.59e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129037     4 LNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRAKQVVFQVNAAP----GAATGGVKVADVIESQAPDKLVYE 79
Cdd:TIGR01395   1 FSIFNVSASALSAQRVRMNVVSSNLANADSTRTPAGDPYRRRRPVFEAELFQdrasRPGGSGVKVAKIVEDDSPFKLVYD 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 16129037    80 PGNPLADAKGYVKMPNVDVVGEMVNTMSASRSYQANVEVLNTVKSMMLKTLTLGQ 134
Cdd:TIGR01395  81 PTHPDADAEGYVKMPNVNVVEEMVDMIEASRSYEANVQVFNTAKSMFLRTLEIGR 135
flgC PRK12629
flagellar basal body rod protein FlgC; Provisional
 1-134 1.48e-42

flagellar basal body rod protein FlgC; Provisional


Pssm-ID: 183634  Cd Length: 135  Bit Score: 137.13  E-value: 1.48e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129037    1 MALLNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRAKQVVFQVNAAP-GAATGGVKVADVIESQAPDKLVYE 79
Cdd:PRK12629   1 MSNLPIFDVAGSALHAQSVRLSTIASNLANADSVAGSAEATYKPIEPIFQAQQSRqDPSLTSVNVKEITTTNAPPIRRYE 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 16129037   80 PGNPLADAKGYVKMPNVDVVGEMVNTMSASRSYQANVEVLNTVKSMMLKTLTLGQ 134
Cdd:PRK12629  81 PGHPLADADGYVFSPDVDPVSQMVNMISASRNYQAGVEMLNTAKELALATLTMGR 135
flgC PRK12631
flagellar basal body rod protein FlgC; Provisional
 1-134 7.80e-40

flagellar basal body rod protein FlgC; Provisional


Pssm-ID: 183636  Cd Length: 138  Bit Score: 130.08  E-value: 7.80e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129037    1 MALLNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRAKQVVFQVNAAPGA----ATGGVKVADVIESQAPDKL 76
Cdd:PRK12631   1 MSLFNIFDVAGSGMSAQSVRLNTTASNIANADSVSSSVDKTYRARHPIFEAEMAKAQsqqqASQGVAVKGIVESDKPLLK 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 16129037   77 VYEPGNPLADAKGYVKMPNVDVVGEMVNTMSASRSYQANVEVLNTVKSMMLKTLTLGQ 134
Cdd:PRK12631  81 EYSPDHPMADADGFIYKPNVNVMEEMADMISASRSYQMNVQVAEAAKSMLQQTLRMGK 138
flgC PRK06802
flagellar basal body rod protein FlgC; Reviewed
 1-134 1.09e-37

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 180702  Cd Length: 141  Bit Score: 124.91  E-value: 1.09e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129037    1 MALLNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRAKQVVF-------QVNAAPGAATGGVKVADVIESQAP 73
Cdd:PRK06802   1 MSFNDIYRIAGSAMTAQTIRLNTVASNLANAESPAASAATAYKARSPVFaavysarTLADPRGVQGAQVQVLDVVQVGGS 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16129037   74 DKLvYEPGNPLADAKGYVKMPNVDVVGEMVNTMSASRSYQANVEVLNTVKSMMLKTLTLGQ 134
Cdd:PRK06802  81 VKR-YEPNNPLANPQGYVFYPDVNVVEEMADMMSASRSFETNVEVLNSVKSMQQSLLKLGE 140
flgC PRK12630
flagellar basal body rod protein FlgC; Provisional
 1-134 1.82e-35

flagellar basal body rod protein FlgC; Provisional


Pssm-ID: 183635  Cd Length: 143  Bit Score: 119.17  E-value: 1.82e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129037    1 MALLNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRAKQVVFQ--VNAAPGAATG-------GVKVADVIESQ 71
Cdd:PRK12630   1 MKAFDTMRISASGLSAERLRMDTIASNIANATTTRTADGGPYKRKIAVFQenLNKELNKKNGayekklyGVKAVGIVEDK 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16129037   72 APDKLVYEPGNPLADAKGYVKMPNVDVVGEMVNTMSASRSYQANVEVLNTVKSMMLKTLTLGQ 134
Cdd:PRK12630  81 SPFRKVYDPSHPDADEEGYVSMPNVNVLNEMADMMASTRSYEANVTAINAEKSMFSKALEIGK 143
flgC PRK12782
flagellar basal body rod protein FlgC; Reviewed
 9-132 1.02e-34

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 139220  Cd Length: 138  Bit Score: 117.17  E-value: 1.02e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129037    9 IAGSALTAQSQRLNVAASNLANADSvTG--PDGQPYRAKQVVFQVNAAPGAATGGVKVADVIESQAPDKLVYEPGNPLAD 86
Cdd:PRK12782  11 IASSGLEAQSTRLRVVSENLANAQS-TGrtPGADPYARKTVTFRAELDRAAGAASVRVKEIGVDTAPFRVEYDPGNPAAD 89

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 16129037   87 AKGYVKMPNVDVVGEMVNTMSASRSYQANVEVLNTVKSMMLKTLTL 132
Cdd:PRK12782  90 ENGYVKLPNVNMLIEMADMREANRSYEANLQVIKQARAMVAMTIDL 135
flgC PRK12628
flagellar basal body rod protein FlgC; Provisional
 1-134 2.21e-29

flagellar basal body rod protein FlgC; Provisional


Pssm-ID: 79089  Cd Length: 140  Bit Score: 103.77  E-value: 2.21e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129037    1 MALLNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRAKQVVF---QVNAAPGAA---TGGVKVADVIESQAPD 74
Cdd:PRK12628   1 MSLNAIFDIAASAMTAETVRLTTSAGNMSNANVEAGSPDEVYQAKYPVFksvQENANQWMGeqiKAGVKLDGIYESDAEP 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129037   75 KLVYEPGNPLADAKGYVKMPNVDVVGEMVNTMSASRSYQANVEVLNTVKSMMLKTLTLGQ 134
Cdd:PRK12628  81 HRRYDPNSPIADKDGFVYTSNINYVEEMANIISASRSYQMNIELLNTTKQLMQRTLQLGE 140
flgC PRK12632
flagellar basal body rod protein FlgC; Provisional
 3-125 1.26e-22

flagellar basal body rod protein FlgC; Provisional


Pssm-ID: 183637 [Multi-domain]  Cd Length: 130  Bit Score: 86.01  E-value: 1.26e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129037    3 LLNIFDIAGSALTAQSQRLNVAASNLANADSvtgpdgqP-YRAKQVVFQVNAAPGAATGGVKVADVIESQAPDKLVYEPG 81
Cdd:PRK12632   4 FSKSLSVSASGMRAQALRLRHVSENIANADT-------PgYRRKTVSFQEARDFDPGSGLVSTGPVRLDRSELPRIYDPS 76

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 16129037   82 NPLADAKGYVKMPNVDVVGEMVNTMSASRSYQANVEVLNTVKSM 125
Cdd:PRK12632  77 HPLADETGYYDGSNVDLVVEIADAREAQRSYEANLRMFDQARQM 120
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 87-132 2.38e-10

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 53.04  E-value: 2.38e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 16129037    87 AKGYVKMPNVDVVGEMVNTMSASRSYQANVEVLNTVKSMMLKTLTL 132
Cdd:pfam06429  29 QQGYLEGSNVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQL 74
FlgB COG1815
Flagellar basal body rod protein FlgB [Cell motility];
1-131 8.92e-09

Flagellar basal body rod protein FlgB [Cell motility];


Pssm-ID: 441420  Cd Length: 135  Bit Score: 50.29  E-value: 8.92e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129037   1 MALL--NIFDIAGSALTAQSQRLNVAASNLANADSvtgPDgqpYRAKQVVFQ--VNAAPGAATGGVKVADVIESQAPDKL 76
Cdd:COG1815   1 MSILfdKTFGLLEKALDLRSLRQEVIASNIANADT---PG---YKARDVDFEaaLKAALGGGSAGLALATTNPRHIPGSA 74

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 16129037  77 VYEPGNPLADAKGYVKMP---NVDVVGEMVNTMSASRSYQANVEVLNTVKSMMLKTLT 131
Cdd:COG1815  75 GSSVSPEVLYRTPTQPSLdgnTVDLDEEMAKLAENALQYQAALTFLNKKFSMLKTAIK 132
flgE PRK06803
flagellar basal body protein FlaE;
89-126 6.54e-07

flagellar basal body protein FlaE;


Pssm-ID: 235862 [Multi-domain]  Cd Length: 402  Bit Score: 46.69  E-value: 6.54e-07
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 16129037   89 GYVKMPNVDVVGEMVNTMSASRSYQANVEVLNTVKSMM 126
Cdd:PRK06803 358 GALEGSNVDITAELVGLMTAQRNYQANAKVISTNDTMQ 395
FlgG COG4786
Flagellar basal body rod protein FlgG [Cell motility];
89-126 2.03e-06

Flagellar basal body rod protein FlgG [Cell motility];


Pssm-ID: 443816 [Multi-domain]  Cd Length: 260  Bit Score: 45.19  E-value: 2.03e-06
                        10        20        30
                ....*....|....*....|....*....|....*...
gi 16129037  89 GYVKMPNVDVVGEMVNTMSASRSYQANVEVLNTVKSMM 126
Cdd:COG4786 215 GYLEGSNVDVVEEMVDMIEAQRAYEANSKVIQTADEML 252
flgG PRK12693
flagellar basal body rod protein FlgG; Provisional
 87-126 3.75e-05

flagellar basal body rod protein FlgG; Provisional


Pssm-ID: 183687 [Multi-domain]  Cd Length: 261  Bit Score: 41.39  E-value: 3.75e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 16129037   87 AKGYVKMPNVDVVGEMVNTMSASRSYQANVEVLNTVKSMM 126
Cdd:PRK12693 215 RQGFLETSNVNVVEELVNMITGQRAYEMNSKAISTADQML 254
Flg_bb_rod pfam00460
Flagella basal body rod protein;
7-34 7.52e-05

Flagella basal body rod protein;


Pssm-ID: 459821 [Multi-domain]  Cd Length: 30  Bit Score: 37.55  E-value: 7.52e-05
                          10        20
                  ....*....|....*....|....*...
gi 16129037     7 FDIAGSALTAQSQRLNVAASNLANADSV 34
Cdd:pfam00460   1 LYTAVSALNAQQIRLDVIANNIANANTP 28
FlgK COG1256
Flagellar hook-associated protein FlgK [Cell motility];
3-67 1.77e-04

Flagellar hook-associated protein FlgK [Cell motility];


Pssm-ID: 440868 [Multi-domain]  Cd Length: 479  Bit Score: 39.86  E-value: 1.77e-04
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16129037   3 LLNIFDIAGSALTAQSQRLNVAASNLANAdSVTGpdgqpYRAKQVVFQ----VNAAPGAATGGVKVADV 67
Cdd:COG1256   2 LFSALNIALSGLNAAQRALDVTSHNIANA-NTPG-----YSRQRVVLSaagpTATGAGQVGTGVRVTGI 64
flgG PRK12816
flagellar basal body rod protein FlgG; Reviewed
 80-126 4.91e-04

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183766 [Multi-domain]  Cd Length: 264  Bit Score: 38.25  E-value: 4.91e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 16129037   80 PGNPLADA-----KGYVKMPNVDVVGEMVNTMSASRSYQANVEVLNTVKSMM 126
Cdd:PRK12816 205 PGIPGSEGfgrvlQGFLEMSNVSIVEEMVTMIVAQRAYEINSKAIQTSDNML 256
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 5-67 5.52e-04

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 38.00  E-value: 5.52e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16129037     5 NIFDIAGSALTAQSQRLNVAASNLANADSvTGpdgqpYRAKQVVF-----QVNAAPGAATGGVKVADV 67
Cdd:TIGR03506   1 MALYTALSGLNAQSSALDVIANNIANANT-TG-----FKRSRAEFqdllsQSVSGSGQVGGGVRTSGV 62
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 89-115 8.12e-04

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 37.62  E-value: 8.12e-04
                          10        20
                  ....*....|....*....|....*..
gi 16129037    89 GYVKMPNVDVVGEMVNTMSASRSYQAN 115
Cdd:TIGR03506 205 GALEGSNVDLAEELVNMISAQRAYQAN 231
flgB PRK12620
flagellar basal body rod protein FlgB; Provisional
 7-134 1.07e-03

flagellar basal body rod protein FlgB; Provisional


Pssm-ID: 183628  Cd Length: 132  Bit Score: 36.53  E-value: 1.07e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129037    7 FDIAGSALTAQSQRLNVAASNLANADSvtgpdgQPYRAKQVVFQ--VNAAPGAATGGVKvadviesQAPDKLVYEPG--- 81
Cdd:PRK12620   9 LGVHGDALTLREQRMKLIASNLSNVDT------PGYKAKDLNFEaaLKSAQGEQDGGLM-------QTTDAKHYEVGggg 75

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 16129037   82 -NPLADAKGYVKmPN-----VDVVGEMVNTMSASRSYQANVEVLNTVKSMMLKTLTlGQ 134
Cdd:PRK12620  76 lNPFQITRESDQ-PSldgntVDPDAERAAYGRAALEYRASLSFLESKVRSMLTAIT-GQ 132
FlgE COG1749
Flagellar hook protein FlgE [Cell motility];
89-126 1.51e-03

Flagellar hook protein FlgE [Cell motility];


Pssm-ID: 441355 [Multi-domain]  Cd Length: 414  Bit Score: 37.07  E-value: 1.51e-03
                        10        20        30
                ....*....|....*....|....*....|....*...
gi 16129037  89 GYVKMPNVDVVGEMVNTMSASRSYQANVEVLNTVKSMM 126
Cdd:COG1749 369 GALESSNVDLAEELVNMIVAQRAYQANAKVITTSDEML 406
FlgB TIGR01396
flagellar basal-body rod protein FlgB; This model represents FlgB, one of several components ...
 5-126 1.69e-03

flagellar basal-body rod protein FlgB; This model represents FlgB, one of several components of bacterial flagella that share a domain described by pfam00460. FlgB is part of the basal body. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 273598 [Multi-domain]  Cd Length: 131  Bit Score: 36.21  E-value: 1.69e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129037     5 NIFDIAGSALTAQSQRLNVAASNLANADSvtgPDgqpYRAKQVVFQVNAA-----PGAATGGVKVADVIESQAPDKLVYE 79
Cdd:TIGR01396   3 NAFGLLQQALDVRSLRQEVIANNIANVDT---PG---YKAKDVSFEAELKkaldnERNSKLTLARTDTRPRHLNAQDSNS 76

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 16129037    80 PGNPL-ADAKGYVK--MPNVDVVGEMVNTMSASRSYQANVEVLNT-VKSMM 126
Cdd:TIGR01396  77 VEPSLqYDYTTQVKndGNNVDIDQEMAELAQNQMHYQALTQFLNGkIKGLN 127
flgF TIGR02490
flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several ...
 71-113 4.71e-03

flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several homologous flagellar basal-body rod proteins in bacteria. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274160 [Multi-domain]  Cd Length: 89  Bit Score: 34.14  E-value: 4.71e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 16129037    71 QAPDKLVYEPGN--------PLADA------KGYVKMPNVDVVGEMVNTMSASRSYQ 113
Cdd:TIGR02490  33 DNPNQLQREGDGlfratgggPAPADsnvrvvQGYLEGSNVNAVSEMVDMIEAQRAYE 89
flgE PRK05682
flagellar hook protein FlgE; Validated
 7-67 8.03e-03

flagellar hook protein FlgE; Validated


Pssm-ID: 235557 [Multi-domain]  Cd Length: 407  Bit Score: 34.81  E-value: 8.03e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16129037    7 FDIAGSALTAQSQRLNVAASNLANADSvTGpdgqpYRAKQVVFQ------VNAAPGAATGGVKVADV 67
Cdd:PRK05682   3 FNTAVSGLNAASNRLDVIGNNIANANT-TG-----FKSSRAEFAdlyansAGTNPTQVGSGVKVAGV 63
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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