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Conserved domains on  [gi|16129039|ref|NP_415594|]
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flagellar hook protein FlgE [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

flagellar hook protein FlgE( domain architecture ID 11448325)

flagellar hook protein FlgE functions as a nano-sized universal joint, which is essential for dynamic and efficient bacterial motility and taxis

CATH:  2.60.98.20
Gene Ontology:  GO:0071973
SCOP:  4003129

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FlgE COG1749
Flagellar hook protein FlgE [Cell motility];
1-402 7.37e-172

Flagellar hook protein FlgE [Cell motility];


:

Pssm-ID: 441355 [Multi-domain]  Cd Length: 414  Bit Score: 486.22  E-value: 7.37e-172
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039   1 MAFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGS-------KVGLGVKVAGITQDFTDGTTTNTGRGL 73
Cdd:COG1749   3 MSFNTGVSGLNAASTALDVIGNNIANSNTVGFKSSRAEFADLVAQSlsganptQVGGGVRVASVAQIFTQGSLQSTGNAL 82

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039  74 DVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPPTIQQGANPTNISIPNTLMAAKTTTTAS 153
Cdd:COG1749  83 DLAISGNGFFVVSDSGGQTYYTRAGSFSLDKDGYLVNSSGLYLQGYPADADGTIPDTGGGLEPIQIPTGQLPAKATTKVT 162

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039 154 MQINLNSSDPLPTvTPFSASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWQVYTQD---SSDPNSIAKTATTLEF 230
Cdd:COG1749 163 LGGNLPADATVPT-APFDPTDPTTYNFSTSVTVYDSLGNSHTLTLYFTKTGANTWTVYVTVdgaDVTGGTGATGTGTLTF 241

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039 231 NANGTLVDGAMANNIA-TGAINGAEPATFSLSFLNSMQQNtGANNIVATTQNGYKPGDLVSYQINDDGTVVGNYSNEQTQ 309
Cdd:COG1749 242 DSNGKLTSPTSGGPGTlTLTVNGAAPQTITLDLSGLTQYA-SSFSVTSLTQDGYAAGTLTGVSIDDDGVVTATYSNGQTR 320

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039 310 LLGQIVLANFANNEGLASEGDNVWSATQSSGVALLGTAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIK 389
Cdd:COG1749 321 PLGQIALATFANPQGLQKLGGNLWAETANSGEPLLGTAGTGGLGSIQSGALESSNVDLAEELVNMIVAQRAYQANAKVIT 400

                       410
                ....*....|...
gi 16129039 390 TQDQILNTLVNLR 402
Cdd:COG1749 401 TSDEMLQTLVNLK 413
 
Name Accession Description Interval E-value
FlgE COG1749
Flagellar hook protein FlgE [Cell motility];
1-402 7.37e-172

Flagellar hook protein FlgE [Cell motility];


Pssm-ID: 441355 [Multi-domain]  Cd Length: 414  Bit Score: 486.22  E-value: 7.37e-172
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039   1 MAFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGS-------KVGLGVKVAGITQDFTDGTTTNTGRGL 73
Cdd:COG1749   3 MSFNTGVSGLNAASTALDVIGNNIANSNTVGFKSSRAEFADLVAQSlsganptQVGGGVRVASVAQIFTQGSLQSTGNAL 82

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039  74 DVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPPTIQQGANPTNISIPNTLMAAKTTTTAS 153
Cdd:COG1749  83 DLAISGNGFFVVSDSGGQTYYTRAGSFSLDKDGYLVNSSGLYLQGYPADADGTIPDTGGGLEPIQIPTGQLPAKATTKVT 162

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039 154 MQINLNSSDPLPTvTPFSASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWQVYTQD---SSDPNSIAKTATTLEF 230
Cdd:COG1749 163 LGGNLPADATVPT-APFDPTDPTTYNFSTSVTVYDSLGNSHTLTLYFTKTGANTWTVYVTVdgaDVTGGTGATGTGTLTF 241

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039 231 NANGTLVDGAMANNIA-TGAINGAEPATFSLSFLNSMQQNtGANNIVATTQNGYKPGDLVSYQINDDGTVVGNYSNEQTQ 309
Cdd:COG1749 242 DSNGKLTSPTSGGPGTlTLTVNGAAPQTITLDLSGLTQYA-SSFSVTSLTQDGYAAGTLTGVSIDDDGVVTATYSNGQTR 320

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039 310 LLGQIVLANFANNEGLASEGDNVWSATQSSGVALLGTAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIK 389
Cdd:COG1749 321 PLGQIALATFANPQGLQKLGGNLWAETANSGEPLLGTAGTGGLGSIQSGALESSNVDLAEELVNMIVAQRAYQANAKVIT 400

                       410
                ....*....|...
gi 16129039 390 TQDQILNTLVNLR 402
Cdd:COG1749 401 TSDEMLQTLVNLK 413
flgE PRK05682
flagellar hook protein FlgE; Validated
 1-402 1.08e-168

flagellar hook protein FlgE; Validated


Pssm-ID: 235557 [Multi-domain]  Cd Length: 407  Bit Score: 478.18  E-value: 1.08e-168
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039    1 MAFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGS------KVGLGVKVAGITQDFTDGTTTNTGRGLD 74
Cdd:PRK05682   1 MSFNTAVSGLNAASNRLDVIGNNIANANTTGFKSSRAEFADLYANSagtnptQVGSGVKVAGVAQQFSQGSITSTGNSLD 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039   75 VAISQNGFFRlVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPA---TGTPPTIqqGANPTNISIPNTLMAAKTTTT 151
Cdd:PRK05682  81 LAISGNGFFV-VSNGGNGFYTRAGAFKLDKNGYLVNAAGYYLQGYPAdadGGTPPTV--GAGLVPLNIPTTALAPKATTS 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039  152 ASMQINLNSSDPLPtvtpfsASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWQVYTQDSSDPNSIAKTA---TTL 228
Cdd:PRK05682 158 GTFQGNLPSTAAFD------PTDPDTYNHSTSLTVYDSLGNSHTLDVYFVKTGDNTWEVYVYDDGKPVSTTATGtgtTTL 231

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039  229 EFNANGTLV---DGAMANNIATGAINGAEPATFSLSFLNSMQQNTGaNNIVATTQNGYKPGDLVSYQINDDGTVVGNYSN 305
Cdd:PRK05682 232 TFDSNGALTtttSPTTFNITGGATNGADGGQTITLDLSGSTQYASG-FTVSATTQDGYAPGTLTGYSIDDDGTVTAVYSN 310

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039  306 EQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALLGTAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNA 385
Cdd:PRK05682 311 GQTKPLGQIALANFANPDGLTKVGGNVWSATAASGVALIGTAGSGGFGTIQSGALESSNVDLSTELVNMIVAQRNYQANA 390

                        410
                 ....*....|....*..
gi 16129039  386 QTIKTQDQILNTLVNLR 402
Cdd:PRK05682 391 KTIKTQDQLLQTLVNLR 407
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 1-384 4.37e-56

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 183.99  E-value: 4.37e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039     1 MAFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGS-----KVGLGVKVAGITQDFTDGTTTNTGRGLDV 75
Cdd:TIGR03506   1 MALYTALSGLNAQSSALDVIANNIANANTTGFKRSRAEFQDLLSQSvsgsgQVGGGVRTSGVATDFSQGSLQSTGNSLDL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039    76 AISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLtgypatgtpptiqqganptnisipntlmaakttttasmq 155
Cdd:TIGR03506  81 AISGDGFFVVQTPDGSEAYTRAGSFKLDADGYLVTSDGYPL--------------------------------------- 121

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039   156 inlnssdplptvtpfsasnadsynkkgsvtvfdsqgnahdmsvyfvkTGDNNWQVYTQDSSDPNSiaktattlefnangt 235
Cdd:TIGR03506 122 -----------------------------------------------LDWGGGPITLPPDAGSVS--------------- 139

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039   236 lvdgamanniatgaingaepatfslsflnsmqqntgannivattqngykpgdlvsyqINDDGTVVGNYSNEQTQLLGQIV 315
Cdd:TIGR03506 140 ---------------------------------------------------------IGEDGTVSATYSNGQTVELGQIA 162

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16129039   316 LANFANNEGLASEGDNVWSATQSSGVALLGTAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSN 384
Cdd:TIGR03506 163 LANFPNPDGLRKEGGNLYSATPGSGAALVGAPGTGGFGTLVSGALEGSNVDLAEELVNMISAQRAYQAN 231
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 323-401 4.44e-16

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 72.30  E-value: 4.44e-16
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16129039   323 EGLASEGDNVWSATQSSGVAllgtaGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401
Cdd:pfam06429   1 AGLEKGGDNLFRETDGAPIL-----GAGADGRVQQGYLEGSNVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQL 74
 
Name Accession Description Interval E-value
FlgE COG1749
Flagellar hook protein FlgE [Cell motility];
1-402 7.37e-172

Flagellar hook protein FlgE [Cell motility];


Pssm-ID: 441355 [Multi-domain]  Cd Length: 414  Bit Score: 486.22  E-value: 7.37e-172
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039   1 MAFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGS-------KVGLGVKVAGITQDFTDGTTTNTGRGL 73
Cdd:COG1749   3 MSFNTGVSGLNAASTALDVIGNNIANSNTVGFKSSRAEFADLVAQSlsganptQVGGGVRVASVAQIFTQGSLQSTGNAL 82

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039  74 DVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPPTIQQGANPTNISIPNTLMAAKTTTTAS 153
Cdd:COG1749  83 DLAISGNGFFVVSDSGGQTYYTRAGSFSLDKDGYLVNSSGLYLQGYPADADGTIPDTGGGLEPIQIPTGQLPAKATTKVT 162

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039 154 MQINLNSSDPLPTvTPFSASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWQVYTQD---SSDPNSIAKTATTLEF 230
Cdd:COG1749 163 LGGNLPADATVPT-APFDPTDPTTYNFSTSVTVYDSLGNSHTLTLYFTKTGANTWTVYVTVdgaDVTGGTGATGTGTLTF 241

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039 231 NANGTLVDGAMANNIA-TGAINGAEPATFSLSFLNSMQQNtGANNIVATTQNGYKPGDLVSYQINDDGTVVGNYSNEQTQ 309
Cdd:COG1749 242 DSNGKLTSPTSGGPGTlTLTVNGAAPQTITLDLSGLTQYA-SSFSVTSLTQDGYAAGTLTGVSIDDDGVVTATYSNGQTR 320

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039 310 LLGQIVLANFANNEGLASEGDNVWSATQSSGVALLGTAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIK 389
Cdd:COG1749 321 PLGQIALATFANPQGLQKLGGNLWAETANSGEPLLGTAGTGGLGSIQSGALESSNVDLAEELVNMIVAQRAYQANAKVIT 400

                       410
                ....*....|...
gi 16129039 390 TQDQILNTLVNLR 402
Cdd:COG1749 401 TSDEMLQTLVNLK 413
flgE PRK05682
flagellar hook protein FlgE; Validated
 1-402 1.08e-168

flagellar hook protein FlgE; Validated


Pssm-ID: 235557 [Multi-domain]  Cd Length: 407  Bit Score: 478.18  E-value: 1.08e-168
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039    1 MAFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGS------KVGLGVKVAGITQDFTDGTTTNTGRGLD 74
Cdd:PRK05682   1 MSFNTAVSGLNAASNRLDVIGNNIANANTTGFKSSRAEFADLYANSagtnptQVGSGVKVAGVAQQFSQGSITSTGNSLD 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039   75 VAISQNGFFRlVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPA---TGTPPTIqqGANPTNISIPNTLMAAKTTTT 151
Cdd:PRK05682  81 LAISGNGFFV-VSNGGNGFYTRAGAFKLDKNGYLVNAAGYYLQGYPAdadGGTPPTV--GAGLVPLNIPTTALAPKATTS 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039  152 ASMQINLNSSDPLPtvtpfsASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWQVYTQDSSDPNSIAKTA---TTL 228
Cdd:PRK05682 158 GTFQGNLPSTAAFD------PTDPDTYNHSTSLTVYDSLGNSHTLDVYFVKTGDNTWEVYVYDDGKPVSTTATGtgtTTL 231

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039  229 EFNANGTLV---DGAMANNIATGAINGAEPATFSLSFLNSMQQNTGaNNIVATTQNGYKPGDLVSYQINDDGTVVGNYSN 305
Cdd:PRK05682 232 TFDSNGALTtttSPTTFNITGGATNGADGGQTITLDLSGSTQYASG-FTVSATTQDGYAPGTLTGYSIDDDGTVTAVYSN 310

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039  306 EQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALLGTAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNA 385
Cdd:PRK05682 311 GQTKPLGQIALANFANPDGLTKVGGNVWSATAASGVALIGTAGSGGFGTIQSGALESSNVDLSTELVNMIVAQRNYQANA 390

                        410
                 ....*....|....*..
gi 16129039  386 QTIKTQDQILNTLVNLR 402
Cdd:PRK05682 391 KTIKTQDQLLQTLVNLR 407
flgE PRK06803
flagellar basal body protein FlaE;
1-400 4.57e-105

flagellar basal body protein FlaE;


Pssm-ID: 235862 [Multi-domain]  Cd Length: 402  Bit Score: 315.94  E-value: 4.57e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039    1 MAFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGlGVKVAGITQDFT-DGTTTNTGRGLDVAISQ 79
Cdd:PRK06803   1 MSFNIALSGLNATTQQLNTISNNIANSSTKGFKGSRTEFSSIYNGGQPG-GVEVSSVSQNFSkDGSLTYTGRGLDLAISG 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039   80 NGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPpTIQQGaNPTNISIPNTLMAAKTTTTASMQINLN 159
Cdd:PRK06803  80 GGFFVLKESDGDTAYTRAGMFRSDVDGYLTDPQGMKLQGYPVDAAG-NLQTG-NVSDLQVQTASLPAKATDQLDFVANLD 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039  160 SSDPL--PTVTPFSASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWQV-YTQDSSDpnSIAKTATTLEFNANGTL 236
Cdd:PRK06803 158 ASVTPidPSVSPFDPTDEKSYNSSTTSTVYDSLGNEHAVTQYFVKTATNEWAVhYTVDGGD--VTPPLGHTLQFDDTGAL 235

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039  237 VDGAMANNIATGAIN--GAEPATFSLSFLNSMQQNTGANNiVATTQNGYKPGDLVSYQINDDGTVVGNYSNEQTQLLGQI 314
Cdd:PRK06803 236 IPGKGSTINLHGTFNpaGASDYDIDIDYTGSTQYAADFNN-SRNKSNGYTSGELNGVRIEDNGMVYATYTNGQRQLQGQV 314

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039  315 VLANFANNEGLASEGDNVWSATQSSGVALLGTAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQI 394
Cdd:PRK06803 315 VLANFANPNGLVTVSNTAWSASNKSGAPILGTPGTGTLGSLTSGALEGSNVDITAELVGLMTAQRNYQANAKVISTNDTM 394


                 ....*.
gi 16129039  395 LNTLVN 400
Cdd:PRK06803 395 QQALFN 400
flgE PRK12637
flagellar hook protein FlgE; Provisional
 1-402 9.56e-84

flagellar hook protein FlgE; Provisional


Pssm-ID: 183641 [Multi-domain]  Cd Length: 473  Bit Score: 263.54  E-value: 9.56e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039    1 MAFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDFTDGTTTNTGRGLDVAIS-Q 79
Cdd:PRK12637   1 MGFGQGLSGLNAASQNLDVIGNNIANSGTVGFKSGAASFADVYASSRVGLGVKVSAINQRFTVGNISTTGGEYDMAIDgG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039   80 NGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTpptiqqGANPTNISIPNTLMAAKTTTTASMQINLN 159
Cdd:PRK12637  81 KGFFRLTDQSGGVFYSRNGEFMVDKNFYIVNAQGFRLTGYPAGGV------GAQPVDLQLPQGNIAPQATSTAGLQTNLN 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039  160 SS---------------------------------------------------------------------DPLPTVTPF 170
Cdd:PRK12637 155 ANakvidpndtpavdgtveldgttyrftnaggtfawvapapldgtynggdiviaggavtgdlasqpgyqpyKPLVAGIPF 234

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039  171 SASNADSYNKKGSVTVFDSQGNAHDMSVYFVKT----GDNNWQVYTQDSSDPNSIAKTAT-TLEFNANGTLVDGAMANNI 245
Cdd:PRK12637 235 DPTNPLSYTDQVPTTVYDSLGNSHQMIQYFAKRpavgTESVYEVYYVLDGQPMQVNGGASqTLNFDTAGNLLNQPPTAQV 314

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039  246 ATGAING----AEPATFSLSFLNSMQQntGANNIVATTQNGYKPGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFAN 321
Cdd:PRK12637 315 TFANPGGnaapADPLAITVSYNGVTQY--GSDFAPKVVQNGYSSGEFMGLSVGKDGSLVAKYTNGETQTIGTLVLANFNN 392

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039  322 NEGLASEGDNVWSATQSSGVALLGTAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401
Cdd:PRK12637 393 VQGLQPVGNNAWVETSESGQATLGQPGTNGLATIAGQALEASNVDMSRELVNMIVAQRTYQANAQTIKTQDEVMQVLMNM 472


                 .
gi 16129039  402 R 402
Cdd:PRK12637 473 R 473
FlgG COG4786
Flagellar basal body rod protein FlgG [Cell motility];
6-402 3.28e-58

Flagellar basal body rod protein FlgG [Cell motility];


Pssm-ID: 443816 [Multi-domain]  Cd Length: 260  Bit Score: 190.80  E-value: 3.28e-58
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039   6 AVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFA------------------GSKVGLGVKVAGITQDFTDGTTT 67
Cdd:COG4786   4 AASGMLAQQTRLDVISNNLANVNTTGFKRDRAVFEDLLYqlirrpgapssqgtqtpvGLQLGTGVRVAATQTDFTQGSLQ 83

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039  68 NTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLtgypatgtpptiqQGANpTNISIPNtlmaak 147
Cdd:COG4786  84 QTGNPLDLAIEGDGFFQVQTPDGETAYTRDGSFQLDADGQLVTSDGYPV-------------LPEN-GPITIPE------ 143

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039 148 ttttasmqinlnssdplptvtpfsasnadsynkkgsvtvfdsqgnahdmsvyfvktgdnnwqvytqdssdpnsiaktatt 227
Cdd:COG4786     --------------------------------------------------------------------------------

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039 228 lefnangtlvdgamanniatgaingaepatfslsflnsmqqntgannivattqngykpgDLVSYQINDDGTVVGNYSNEQ 307
Cdd:COG4786 144 -----------------------------------------------------------DATSITISEDGTVSVTLADGD 164

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039 308 TQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALLGTAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQT 387
Cdd:COG4786 165 GQQVGQLGLVDFANPAGLEKVGDNLFRETAASGAPIVGTPGEDGLGTLRQGYLEGSNVDVVEEMVDMIEAQRAYEANSKV 244

                       410
                ....*....|....*
gi 16129039 388 IKTQDQILNTLVNLR 402
Cdd:COG4786 245 IQTADEMLGKANNLR 259
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 1-384 4.37e-56

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 183.99  E-value: 4.37e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039     1 MAFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGS-----KVGLGVKVAGITQDFTDGTTTNTGRGLDV 75
Cdd:TIGR03506   1 MALYTALSGLNAQSSALDVIANNIANANTTGFKRSRAEFQDLLSQSvsgsgQVGGGVRTSGVATDFSQGSLQSTGNSLDL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039    76 AISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLtgypatgtpptiqqganptnisipntlmaakttttasmq 155
Cdd:TIGR03506  81 AISGDGFFVVQTPDGSEAYTRAGSFKLDADGYLVTSDGYPL--------------------------------------- 121

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039   156 inlnssdplptvtpfsasnadsynkkgsvtvfdsqgnahdmsvyfvkTGDNNWQVYTQDSSDPNSiaktattlefnangt 235
Cdd:TIGR03506 122 -----------------------------------------------LDWGGGPITLPPDAGSVS--------------- 139

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039   236 lvdgamanniatgaingaepatfslsflnsmqqntgannivattqngykpgdlvsyqINDDGTVVGNYSNEQTQLLGQIV 315
Cdd:TIGR03506 140 ---------------------------------------------------------IGEDGTVSATYSNGQTVELGQIA 162

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16129039   316 LANFANNEGLASEGDNVWSATQSSGVALLGTAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSN 384
Cdd:TIGR03506 163 LANFPNPDGLRKEGGNLYSATPGSGAALVGAPGTGGFGTLVSGALEGSNVDLAEELVNMISAQRAYQAN 231
flgG PRK12636
flagellar basal body rod protein FlgG; Provisional
 7-402 6.51e-42

flagellar basal body rod protein FlgG; Provisional


Pssm-ID: 183640 [Multi-domain]  Cd Length: 263  Bit Score: 148.36  E-value: 6.51e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039    7 VSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFA-----------------GSKVGLGVKVAGITQDFTDGTTTNT 69
Cdd:PRK12636   9 ISGMKNFQTKLDVIGNNIANVNTYGFKKSRVTFKDMVSqtisgasgptanrggvnSKQVGLGSQLGAIDTIHTQGSLQTT 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039   70 GRGLDVAISQNGFFRLVDSNGsVFYSRNGQFKLDENRNLVNMQGLQLTGYpatgtpptiqqGANPTNIsipntlmaaktt 149
Cdd:PRK12636  89 GRPLDLAISGDGFFRVGDGDN-TAYTRAGNFYLDNEGNIVNADGLYLLGM-----------NGGRIQI------------ 144

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039  150 ttasmqinlnssdplptvtpfsasnadsynkkgsvtvfdsqgnahdmsvyfvktgdnnwqvytqdssdpnsiaktattle 229
Cdd:PRK12636     --------------------------------------------------------------------------------

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039  230 fnangtlvdgamanniatgaingaepatfslsflnsmqqntgannivattqngykPGDLVSYQINDDGTVVGNYSNEQTQ 309
Cdd:PRK12636 145 -------------------------------------------------------PTDAQSFSIGADGTVSYVDAGGELQ 169

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039  310 LLGQIVLANFANNEGLASEGDNVWSATQSSGVALLGTAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIK 389
Cdd:PRK12636 170 TAGQIGLATFANPDGLEKAGDNLYRETLNSGTPSAVVPGEGGTGKIVSGALEMSNVDLAEEFTEMIVAQRGFQANTRIIT 249

                        410
                 ....*....|...
gi 16129039  390 TQDQILNTLVNLR 402
Cdd:PRK12636 250 TSDEILQELVNLK 262
flgG_G_neg TIGR02488
flagellar basal-body rod protein FlgG, Gram-negative bacteria; This family consists of the ...
 2-402 2.99e-41

flagellar basal-body rod protein FlgG, Gram-negative bacteria; This family consists of the FlgG protein of the flagellar apparatus in the Proteobacteria and spirochetes. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 131541 [Multi-domain]  Cd Length: 259  Bit Score: 146.34  E-value: 2.99e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039     2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMF-------------------AGSKVGLGVKVAGITQDFT 62
Cdd:TIGR02488   1 ALWTAATGMNAQQTNMDVISNNLANVNTTGFKKDRAEFEDLLyqterqpgaqsseqqtilpVGVQVGLGVRVVATQKLFT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039    63 DGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTgypatgtpPTIQQGANPTNISIpnt 142
Cdd:TIGR02488  81 QGSLQNTGNDLDLAIEGEGFFQVLMPDGTTAYTRDGAFKINAEGQLVTSNGYPLQ--------PEITIPENATSITV--- 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039   143 lmaakttttasmqinlnssdplptvtpfsasnadsyNKKGSVTVFdsqgnahdmsvyfvktgdnnwqvyTQDSSDPNSIa 222
Cdd:TIGR02488 150 ------------------------------------GSDGEVSVR------------------------QGGQTEPQEV- 168

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039   223 ktattlefnangtlvdgamanniatgaingaepatfslsflnsmqqntgannivattqngykpgdlvsyqinddgtvvgn 302
Cdd:TIGR02488     --------------------------------------------------------------------------------

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039   303 ysneqtqllGQIVLANFANNEGLASEGDNVWSATQSSGVALLGTAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQ 382
Cdd:TIGR02488 169 ---------GQITLATFINPAGLEAVGENLFRETPASGPPQIGTPGLDGFGKLRQGFLEASNVNVVQEMVDMITAQRAYE 239

                         410       420
                  ....*....|....*....|
gi 16129039   383 SNAQTIKTQDQILNTLVNLR 402
Cdd:TIGR02488 240 MNSKAIQASDQMLQTVSQLL 259
flgE PRK08425
flagellar hook protein FlgE; Validated
 63-402 1.30e-40

flagellar hook protein FlgE; Validated


Pssm-ID: 236263 [Multi-domain]  Cd Length: 731  Bit Score: 152.93  E-value: 1.30e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039   63 DGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNgqfkldenrnlvnmQGLQLTGYpatgtppTIQQGANPTNISIPNT 142
Cdd:PRK08425 406 DGNYQDSNASVKVTVNQYGMFEISNPDNKNTIKKN--------------LNLFVTGY-------SSKNDNVTNNVLFTNI 464

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039  143 LMAAKTTTTASMQINLNSSDPlpTVTPFSASnadsynkkgsVTVFDSQGNAHDMSVYFVKT-----GDNNWQV------- 210
Cdd:PRK08425 465 MKGLNGASLIEGGASASSSKL--THATHAAS----------IDIYDSLGSKHTLRIEFYKSsttqdGGAEWNMiiivpep 532

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039  211 ---YTQDSSDPNSIakTATTLEFNANGTLVdGAMANNIATGAINGAEP-ATFSLSFLNSMQQN--TGANNIVATT---QN 281
Cdd:PRK08425 533 aeiNGGSEGRPNNF--EGGRLRFNNDGSLA-GMNPPTLQFDPNNGAAApQRINLSFGTSGSFDglTSVDKISETYaieQD 609

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039  282 GYKPGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALLGTAGTGNFGTLTNGALE 361
Cdd:PRK08425 610 GYTAGDLMDIRFDSDGTILGAFTNGRTFALAQVALANFANNAGLQAEGGNVFSQTANSGQAVIGAAGTGGRGSISGSKLE 689

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 16129039  362 ASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNLR 402
Cdd:PRK08425 690 MSNVDLSRSLTQLIVIQRGFQANSKTITTSDQMLNTLLQLK 730
flgG PRK12693
flagellar basal body rod protein FlgG; Provisional
 6-402 3.38e-40

flagellar basal body rod protein FlgG; Provisional


Pssm-ID: 183687 [Multi-domain]  Cd Length: 261  Bit Score: 143.46  E-value: 3.38e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039    6 AVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMF------AGSK------------VGLGVKVAGITQDFTDGTTT 67
Cdd:PRK12693   8 AKTGLDAQQTNIDVISNNLANVNTTGFKKSRAVFEDLLyqtirqPGAQssqnttlpsglqVGTGVRPVATQKIFTQGNLQ 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039   68 NTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTgypatgtpPTIQQGANPTNISIpntlmaak 147
Cdd:PRK12693  88 QTGNSLDVAIEGQGFFQVQLPDGTIAYTRDGSFKLDQDGQLVTSGGYPLQ--------PEITIPENATSITI-------- 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039  148 ttttasmqinlnssdplptvtpfsasnadsynkkgsvtvfdsqgnahdmsvyfvktgdnnwqvytqdssdpnsiaktatt 227
Cdd:PRK12693     --------------------------------------------------------------------------------

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039  228 lefnangtlvdgamanniatgaingaepatfslsflnsmqqntGANNIVATTQNGykpgdlvsyqinddgtvvgnysNEQ 307
Cdd:PRK12693 152 -------------------------------------------GTDGTVSVTQAG----------------------QAA 166

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039  308 TQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALLGTAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQT 387
Cdd:PRK12693 167 PQVVGQITLTDFINPAGLESIGENLYLETAASGAPIEGTPGLNGLGTLRQGFLETSNVNVVEELVNMITGQRAYEMNSKA 246

                        410
                 ....*....|....*
gi 16129039  388 IKTQDQILNTLVNLR 402
Cdd:PRK12693 247 ISTADQMLQYVNQLL 261
flgG PRK12816
flagellar basal body rod protein FlgG; Reviewed
 6-402 5.12e-32

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183766 [Multi-domain]  Cd Length: 264  Bit Score: 121.84  E-value: 5.12e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039    6 AVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMF------------------AGSKVGLGVKVAGITQDFTDGTTT 67
Cdd:PRK12816   8 AASGMNAQQFNIDTIANNLANVNTTGFKKIRAEFEDLIyqtqrragtpatedtvtpLGVQVGHGVKVAATQRLFEQGSLQ 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039   68 NTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTgypatgtPPTIQqganPTNiSIPNTLMAAK 147
Cdd:PRK12816  88 ATGNKLDVAIEGEGFFKILMPDGTYAYTRDGSFKIDANGQLVTSNGYRLL-------PEIIF----PEN-YILNSITISE 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039  148 ttttasmqinlnssdplptvtpfsasnadsynkKGSVTVfdsqgnahdmsvyfvKTGDNNwqvytqdssdpnsiaktatt 227
Cdd:PRK12816 156 ---------------------------------EGIVSV---------------KVGEDN-------------------- 167

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039  228 lefnangtlvdgamanniatgaingaEPATfslsflnsmqqntgannivattqngykpgdlvsyqinddgtvvgnysneq 307
Cdd:PRK12816 168 --------------------------DPIE-------------------------------------------------- 171

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039  308 tqlLGQIVLANFANNEGLASEGDNVWSATQSSGVALLGTAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQT 387
Cdd:PRK12816 172 ---LGQIELYRFVNPAGLSAIGKNLFKETIASGQEIPGIPGSEGFGRVLQGFLEMSNVSIVEEMVTMIVAQRAYEINSKA 248

                        410
                 ....*....|....*
gi 16129039  388 IKTQDQILNTLVNLR 402
Cdd:PRK12816 249 IQTSDNMLGTANNLK 263
flgG PRK12692
flagellar basal body rod protein FlgG; Reviewed
 2-398 3.06e-25

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 139158 [Multi-domain]  Cd Length: 262  Bit Score: 103.39  E-value: 3.06e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039    2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMF-------------------AGSKVGLGVKVAGITQDFT 62
Cdd:PRK12692   3 ALAIAATGMSAQQLNLEVIANNIANLNTTGFKGARAEFTDLLyqaerqqgvpnqagqeavpEGAMLGLGVRAAAIRNLHR 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039   63 DGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLtgypatgtpptiqqgaNPTnISIPnt 142
Cdd:PRK12692  83 QGSLAQTGNQLDLAVNGRGYFQVTSPNGEIQYTRAGSFNKNAAGQLVTMEGYAV----------------DPA-ILIP-- 143

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039  143 lmaakttttasmqinlnssdplptvtpfsasnadsynkkgsvtvfdsqgnahdmsvyfvktgdnnwqvytqdssdpnsia 222
Cdd:PRK12692     --------------------------------------------------------------------------------

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039  223 ktattlefnangtlvdgamanniatgaingaepatfslsflnsmqQNTgannivattqngykpgdlVSYQINDDGTVVGN 302
Cdd:PRK12692 144 ---------------------------------------------QNT------------------TQVTINESGQVFAK 160

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039  303 YSNEQT-QLLGQIVLANFANNEGLASEGDNVWSATQSSGVALLGTAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNY 381
Cdd:PRK12692 161 IDGQVApQNLGQLTLANFANESGLEPLGNGLYRETPASGAPVVGNPGDVGFGKIQQGYLEGSNVDPVKEITSLITAQRAF 240

                        410
                 ....*....|....*..
gi 16129039  382 QSNAQTIKTQDQILNTL 398
Cdd:PRK12692 241 EMNSKVIQAADEMAGTV 257
flgE PRK08425
flagellar hook protein FlgE; Validated
 7-354 5.99e-24

flagellar hook protein FlgE; Validated


Pssm-ID: 236263 [Multi-domain]  Cd Length: 731  Bit Score: 104.01  E-value: 5.99e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039    7 VSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSK-----------------VGLGVKVAGITQDFTDGTTTNT 69
Cdd:PRK08425   9 VSGLQAHQIAMDVEGNNIANVNTTGFKYSRASFVDMLSQTKliatapkgglggqndmqIGLGVGVSSTTKIFSQGSIQNT 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039   70 GRGLDVAISQNGFFRLVDSNGSV-FYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPPTIQQGANPTNISI-PNTLMAAK 147
Cdd:PRK08425  89 DKNTDLAIQGDGFFIVSPDGGTTrNYTRDGDFKFDAQGNFVNNGGYVVQGWVSDTDTGTIDSTGPIQNIRIdPGMVMPAR 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039  148 TTTTASMQINLNSSDPLPT-VTPFSA-----------SNADSYNKKGSVTVFDSQGN----AHDMSVYFVKTGD------ 205
Cdd:PRK08425 169 ASTEVSIKANLNSGRHIGTqSAPIYAldsvhgwndktGDTAKTNDDGINPFYDSSKNlaqvAEDMGVLFNADGDalnlre 248

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039  206 --NNWQVYTqDSSDPNSIAKTATTLEFNANGTLVdgamaNNIATGAINGAEPATFSLSFLNSMQQNTGannIVATTQNGY 283
Cdd:PRK08425 249 gqGIWVSYA-DAKMTKDIVPSAENLDITLNGVKI-----SFTNDSAVSGTSSLVAAKNAINAQKSKTG---VEAYLDGNQ 319

                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16129039  284 kpgdLVSYQINDDGTvVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALLGTAGTGNFGT 354
Cdd:PRK08425 320 ----LRLENTNSLGT-TEKMKNIVITVNGTGTFANFVDGDKDITAFKYSYTSSPSPIVPMYNNSDIRQFRT 385
flgE_epsilon TIGR02489
flagellar hook protein FlgE, epsilon proteobacterial; Members of this family are flagellar ...
 7-280 2.36e-19

flagellar hook protein FlgE, epsilon proteobacterial; Members of this family are flagellar hook proteins, designated FlgE, as found in the epsilon subdivision of the Proteobacteria (Helicobacter, Wolinella, and Campylobacter). These proteins differ significantly in architecture from proteins designated FlgE in other lineages; the N-terminal and C-terminal domains are homologous, but members of this family only contain a large central domain that is surface-exposed and variable between strains.


Pssm-ID: 131542 [Multi-domain]  Cd Length: 719  Bit Score: 90.39  E-value: 2.36e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039     7 VSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSK-----------------VGLGVKVAGITQDFTDGTTTNT 69
Cdd:TIGR02489   9 VSGMQAHQVALDVEGNNIANVNTTGFKYSRADFGDMLSQTVkiatspydglggqndlsIGLGVSISSTTKIFSQGSVQTT 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039    70 GRGLDVAISQNGFFRLVDSNGSV-FYSRNGQFKLDENRNLVNMQGLQLTGY------PATGTPP-----TIQQGANPTNI 137
Cdd:TIGR02489  89 NSKTDVAINGDGFFIVSDDGGLTnYYTRDGAFKFDAYGNFVNNSGYIVQGWnrpleaAESGTMSdwddqTVDSTRPPQNI 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039   138 SI-PNTLMAAKTTTTASMQINLNSSDPLPTVTPFSASNADSYN-KKGSVTVFDSQGN----AHDMSVYFVKTGD----NN 207
Cdd:TIGR02489 169 FIdPGMVIPAAATTEVALKANLNAGLNIDTSSNLYALDSTHQTaADGTTAFYDSSGEvtqkGEDAGVLFNASGTalnlRE 248

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16129039   208 WQVYTQDSSDPNSIAKTATTLEFNANGtlVDGAMANNIATGAINGAEPATFSLSFLNSMQQNTGANNIVATTQ 280
Cdd:TIGR02489 249 GQGIWVSYADAKYSTNKVVVSAFDTIT--LNGVRIQFANISNIDGVSSYVAAQNAINDTRDGTGVRAVKSAGQ 319
flgE PRK05841
flagellar hook protein FlgE; Validated
 169-402 4.29e-17

flagellar hook protein FlgE; Validated


Pssm-ID: 235620 [Multi-domain]  Cd Length: 603  Bit Score: 82.97  E-value: 4.29e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039  169 PFSASNADSYNKKGSVTVFDSQgnahdmsVYFVKTGDNN--------WQV----YTQDSSDPNSIAKTATTLEFNANGTL 236
Cdd:PRK05841 356 PSYSTEVEIYDKAGDKYLLQSE-------YYMTNSGDPTssprknqtWEVksyiVDPKNKTPINTDPTWEIVGFDATHKM 428

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039  237 VDGAMA----NNIATGAINGAEPATFS-LSFLNSmqqntganNIVATTQNGYKPGDLVSYQINDDGTVVGNYSNEQTQLL 311
Cdd:PRK05841 429 KAAPMTldfkGNKLTYSLDKSEDHDSSnLSYQDS--------KLLEASQDGKPRGILRDVRIDENGVISLAFSNGVVEPM 500

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039  312 GQIVLANFANNEGLASEGDNVWSATQ---------SSGVALLGTAGTGN--FGTLTNGALEASNVDLSKELVNMIVAQRN 380
Cdd:PRK05841 501 GRIGIAAFTNDQGLRKVGGNLFEMQEgtingenrpLSGNPILGWDEEGKlkFGKVRHKYLETSNVDAGNALTNLILMQRG 580

                        250       260
                 ....*....|....*....|..
gi 16129039  381 YQSNAQTIKTQDQILNTLVNLR 402
Cdd:PRK05841 581 YSMNARAFGTGDDLIKEAISLK 602
flgG PRK12817
flagellar basal body rod protein FlgG; Reviewed
 2-113 4.88e-17

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183767 [Multi-domain]  Cd Length: 260  Bit Score: 80.12  E-value: 4.88e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039    2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGS--------------KVGLGVKVAGITQDFTDGTTT 67
Cdd:PRK12817   4 AFWNSKSGMNAQQEKLDSISNNLANVNTTGYKREDVSFSDLVYETldrkgyptndkpeiITGTGVKATNWIRDNQQGNLL 83

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 16129039   68 NTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQG 113
Cdd:PRK12817  84 TTGNKTDLAIDGEGFFRVIMADGTYAYTRAGNFNIDSNGMLVDDNG 129
FlgF COG4787
Flagellar basal body rod protein FlgF [Cell motility];
6-118 1.27e-16

Flagellar basal body rod protein FlgF [Cell motility];


Pssm-ID: 443817 [Multi-domain]  Cd Length: 246  Bit Score: 78.64  E-value: 1.27e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039   6 AVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAgskVGLG------VKVAGITQDFTDGTTTNTGRGLDVAISQ 79
Cdd:COG4787   8 AMSGAKQTLEAQAVTANNLANASTTGFRADLEAARAVPV---QGEGlptrafAVTETPGTDFSPGPLQQTGRPLDVAIQG 84

                        90       100       110
                ....*....|....*....|....*....|....*....
gi 16129039  80 NGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTG 118
Cdd:COG4787  85 DGWLAVQAPDGSEAYTRAGDLQVDANGQLVTGNGLPVLG 123
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 323-401 4.44e-16

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 72.30  E-value: 4.44e-16
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16129039   323 EGLASEGDNVWSATQSSGVAllgtaGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401
Cdd:pfam06429   1 AGLEKGGDNLFRETDGAPIL-----GAGADGRVQQGYLEGSNVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQL 74
flgF PRK12689
flagellar basal-body rod protein FlgF;
17-138 2.53e-15

flagellar basal-body rod protein FlgF;


Pssm-ID: 183684 [Multi-domain]  Cd Length: 253  Bit Score: 75.17  E-value: 2.53e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039   17 LDVIGNNIANSATYGFKSGTASF---------ADMFAGSKVGLG-VKVAGITQDFTDGTTTNTGRGLDVAISQNGFFrLV 86
Cdd:PRK12689  19 LDVVANNVANVNTNGFKARSSLFqeylmpgahEDNFQRPDRRVSyVQDRGTPLDLSQGPLEQTKNPLDVAIDGDAFL-AV 97

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 16129039   87 DSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGypaTGTPPTIQQGANPTNIS 138
Cdd:PRK12689  98 QTPQGERYTRDGALEINAQGQLVTSDGYPVLG---TGGPITFQPTDTGIAIS 146
flgF TIGR02490
flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several ...
 292-382 3.21e-14

flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several homologous flagellar basal-body rod proteins in bacteria. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274160 [Multi-domain]  Cd Length: 89  Bit Score: 67.65  E-value: 3.21e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039   292 QINDDGTVVGNysneqTQLLGQIVLANFANNEGLASEGDNVWSATQSsgvalLGTAGTGNFGTLTnGALEASNVDLSKEL 371
Cdd:TIGR02490  10 TIGADGTISQD-----GEEVGRLGLVNFDNPNQLQREGDGLFRATGG-----GPAPADSNVRVVQ-GYLEGSNVNAVSEM 78

                          90
                  ....*....|.
gi 16129039   372 VNMIVAQRNYQ 382
Cdd:TIGR02490  79 VDMIEAQRAYE 89
flgF PRK12640
flagellar basal body rod protein FlgF; Reviewed
 6-132 1.37e-13

flagellar basal body rod protein FlgF; Reviewed


Pssm-ID: 183642 [Multi-domain]  Cd Length: 246  Bit Score: 69.88  E-value: 1.37e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039    6 AVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKvGLGVKVAGITQ----DFTDGTTTNTGRGLDVAISQNG 81
Cdd:PRK12640   8 AMSGASQNLNQQAVVANNLANASTPGFRADLAQARAVPVFGE-GLPTRVFALAStpgaDFSPGPLQTTGRPLDVALQGDG 86

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 16129039   82 FFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGypaTGTPPTIQQGA 132
Cdd:PRK12640  87 WLAVQAPDGSEAYTRNGSLQVDANGQLRTANGLPVLG---DGGPIAVPPGA 134
flgG PRK12818
flagellar basal body rod protein FlgG; Reviewed
 3-118 2.51e-11

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183768 [Multi-domain]  Cd Length: 256  Bit Score: 63.56  E-value: 2.51e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039    3 FSQAVSGLNAAATNLDVIGNNIANSATYGFKSGT---ASFADMF-------AGSK--------VGLGVKVAGITQDFTDG 64
Cdd:PRK12818   5 LYTAVSGMITLEAKQDVITNNLANVNTVGYKSDNlafKSFEDVLienydkkVGNKnvkniiggLSMGSKIDEVNTLFTQG 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 16129039   65 TTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTG 118
Cdd:PRK12818  85 IIKSTDKPTDFAIQGRGFFTVERNAGNNYYTRDGHFHVDTQGYLVNDSGYYVLG 138
flgF PRK12690
flagellar hook-basal body complex protein;
19-146 1.65e-10

flagellar hook-basal body complex protein;


Pssm-ID: 183685 [Multi-domain]  Cd Length: 238  Bit Score: 60.85  E-value: 1.65e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039   19 VIGNNIANSATYGFKSGTASFADMFAGSKVG---LGVKVAGITQ-DFTDGTTTNTGRGLDVAISQNGFFrLVDSNGSVFY 94
Cdd:PRK12690  21 VVANNIANASTTGFRREGLVFSEYVKSLDSGeasLSMARASGRQtDLEQGGLTQTGGQFDFAIEGEGFF-MVETPQGERL 99

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 16129039   95 SRNGQFKLDENRNLVNMQGLQLTGypATGTPPTIQQGANPTNISIPNTLMAA 146
Cdd:PRK12690 100 TRAGSFTPNAEGELVDPDGNRLLD--AGGAPIFIPPDARSVAVGADGTLSAD 149
flgF PRK12642
flagellar basal-body rod protein FlgF;
6-138 2.22e-10

flagellar basal-body rod protein FlgF;


Pssm-ID: 237153 [Multi-domain]  Cd Length: 241  Bit Score: 60.45  E-value: 2.22e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039    6 AVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKvglGVKVAGITQ--DFTD---GTTTNTGRGLDVAISQN 80
Cdd:PRK12642   8 ALSSQMALEKRLDTIADNVANVNTVGFRATEVKFDTVVSDTA---SKKVAFVSQgkSYLSteaGPLTKTGNPLDFAVKGD 84

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16129039   81 GFFRLVDSNGSVfYSRNGQFKLDENRNLVNmqglqLTGYP---ATGTPPTIQQGANPTNIS 138
Cdd:PRK12642  85 AWFSFDTPAGQV-YTRDGRFTMTSTGELVS-----VTGYPvldAGGAPIQLNPGGGEPTIG 139
FlaE pfam07559
Flagellar basal body protein FlaE; This family consists of several bacterial FlaE flagellar ...
 183-283 3.90e-10

Flagellar basal body protein FlaE; This family consists of several bacterial FlaE flagellar proteins. These proteins are part of the flageller basal body rod complex.


Pssm-ID: 429537 [Multi-domain]  Cd Length: 94  Bit Score: 56.26  E-value: 3.90e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039   183 SVTVFDSQGNAHDMSVYFVKTG--DNNWQVYTQDSSDPNSIAKTATTleFNANGTLVDGAMANNiatgaingaepaTFSL 260
Cdd:pfam07559   5 SVTVYDSLGNSHTLTVYFVKTAtgPNTWEVYVTVDGEVGDGDGTAGT--ASTAGGLMTGTLTFD------------SITL 70

                          90       100
                  ....*....|....*....|....
gi 16129039   261 SF-LNSMQQNTGANNIVATTQNGY 283
Cdd:pfam07559  71 DFgLTGSTQYASAFSVTSLSQDGY 94
flgF PRK12643
flagellar basal body rod protein FlgF; Reviewed
 8-123 1.25e-06

flagellar basal body rod protein FlgF; Reviewed


Pssm-ID: 139117 [Multi-domain]  Cd Length: 209  Bit Score: 49.07  E-value: 1.25e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039    8 SGLNAAATNLD---VIGNNIANSATYGFKSGTASF-ADMFAGSKVGLGVKVAGITQ--DFTDGTTTNTGRGLDVAISQNG 81
Cdd:PRK12643   7 TAMGAARQSLElqaVTANNLANASTPGFRAQLAAMrAVPIDGPSLATRTMVTTSTPgvDISQGTMNFSGRPLDVALQQDG 86

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 16129039   82 FFRLVDSNGSVFYSRNGQFKLDENRNLVnmqglqLTGYPATG 123
Cdd:PRK12643  87 YLAVQLPDGSEAYTRNGNIQISANGQMT------VQGYPLMG 122
flgF PRK12690
flagellar hook-basal body complex protein;
285-400 1.55e-06

flagellar hook-basal body complex protein;


Pssm-ID: 183685 [Multi-domain]  Cd Length: 238  Bit Score: 48.91  E-value: 1.55e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039  285 PGDLVSYQINDDGTVVGNysneqTQLLGQIVLANFANNEGLASEGDNVWSATQssgvallGTAGTGNfGTLTNGALEASN 364
Cdd:PRK12690 132 PPDARSVAVGADGTLSAD-----GQPLGQIGLYQPTDPLGLRREGGTRFRAEG-------GVEPAEG-ARLLQGFLEGSN 198

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 16129039  365 VDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 400
Cdd:PRK12690 199 VNPVSEIARMIEVQRAYELGQSFLDREDERIRTTIR 234
flgF PRK12641
flagellar basal-body rod protein FlgF;
19-108 3.88e-06

flagellar basal-body rod protein FlgF;


Pssm-ID: 105809 [Multi-domain]  Cd Length: 252  Bit Score: 48.02  E-value: 3.88e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039   19 VIGNNIANSATYGFKSG------TASFADMFAGSKvglgvKVAGITQDFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSV 92
Cdd:PRK12641  21 IIANNLANISTTGFKEKfilaiqNHNVKNLYNSDK-----KITKEYYNLSPGTLRYTGRNLDLFIKDNGWLTIKDTNGQE 95

                         90
                 ....*....|....*.
gi 16129039   93 FYSRNGQFKLDENRNL 108
Cdd:PRK12641  96 AYTKNGHLKINSKRKL 111
FlgC COG1558
Flagellar basal body rod protein FlgC [Cell motility];
357-395 1.84e-05

Flagellar basal body rod protein FlgC [Cell motility];


Pssm-ID: 441166 [Multi-domain]  Cd Length: 135  Bit Score: 43.95  E-value: 1.84e-05
                        10        20        30
                ....*....|....*....|....*....|....*....
gi 16129039 357 NGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQIL 395
Cdd:COG1558  89 DGYVRYPNVNVVEEMVDMISASRSYEANVEVINTAKSML 127
flgC PRK05681
flagellar basal body rod protein FlgC; Reviewed
 1-60 3.48e-05

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 235556 [Multi-domain]  Cd Length: 135  Bit Score: 43.27  E-value: 3.48e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129039    1 MAFSQAV----SGLNAAATNLDVIGNNIANSATYG------FKSGTASFADMFAGSKVGLGVKVAGITQD 60
Cdd:PRK05681   1 MSLFSSFniagSGLSAQSQRLNVISSNIANADSTAapdgdpYRRKQVVFAAELDPGQGTGGVKVAKIVED 70
Flg_bb_rod pfam00460
Flagella basal body rod protein;
3-32 1.46e-04

Flagella basal body rod protein;


Pssm-ID: 459821 [Multi-domain]  Cd Length: 30  Bit Score: 38.70  E-value: 1.46e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 16129039     3 FSQAVSGLNAAATNLDVIGNNIANSATYGF 32
Cdd:pfam00460   1 LYTAVSALNAQQIRLDVIANNIANANTPGY 30
FlgC TIGR01395
flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components ...
 357-396 2.30e-04

flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components of bacterial flagella that share a domain described by pfam00460. FlgC is part of the basal body. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 130462 [Multi-domain]  Cd Length: 135  Bit Score: 40.80  E-value: 2.30e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 16129039   357 NGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILN 396
Cdd:TIGR01395  89 EGYVKMPNVNVVEEMVDMIEASRSYEANVQVFNTAKSMFL 128
FlgK COG1256
Flagellar hook-associated protein FlgK [Cell motility];
1-59 2.45e-04

Flagellar hook-associated protein FlgK [Cell motility];


Pssm-ID: 440868 [Multi-domain]  Cd Length: 479  Bit Score: 42.94  E-value: 2.45e-04
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16129039   1 MAFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSK----VGLGVKVAGITQ 59
Cdd:COG1256   4 SALNIALSGLNAAQRALDVTSHNIANANTPGYSRQRVVLSAAGPTATgagqVGTGVRVTGIRR 66
flgC PRK05681
flagellar basal body rod protein FlgC; Reviewed
 357-396 3.13e-04

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 235556 [Multi-domain]  Cd Length: 135  Bit Score: 40.58  E-value: 3.13e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 16129039  357 NGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILN 396
Cdd:PRK05681  88 KGYVKYPNVNVVVEMVDMISASRSYEANVEVLNAAKSMMQ 127
FlgC COG1558
Flagellar basal body rod protein FlgC [Cell motility];
2-60 4.33e-04

Flagellar basal body rod protein FlgC [Cell motility];


Pssm-ID: 441166 [Multi-domain]  Cd Length: 135  Bit Score: 40.10  E-value: 4.33e-04
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16129039   2 AFSQAVSGLNAAATNLDVIGNNIANSATYG------FKSGTASFADMFAGSKVGL-GVKVAGITQD 60
Cdd:COG1558   6 AFDIAGSGLTAQRLRLNVIASNLANANSTRtsdggpYRRKQVVFEAVLDRAGSGAaGVRVAGIVED 71
FlgK COG1256
Flagellar hook-associated protein FlgK [Cell motility];
362-402 5.52e-04

Flagellar hook-associated protein FlgK [Cell motility];


Pssm-ID: 440868 [Multi-domain]  Cd Length: 479  Bit Score: 41.79  E-value: 5.52e-04
                        10        20        30        40
                ....*....|....*....|....*....|....*....|.
gi 16129039 362 ASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNLR 402
Cdd:COG1256 438 VSGVNLDEEMANLIKFQQAYQANARVITTADEMLDTLLNIV 478
flgK_ends TIGR02492
flagellar hook-associated protein FlgK; The flagellar hook-associated protein FlgK of ...
 1-59 8.38e-04

flagellar hook-associated protein FlgK; The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274162 [Multi-domain]  Cd Length: 323  Bit Score: 41.18  E-value: 8.38e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16129039     1 MAFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASF----ADMFAGSKVGLGVKVAGITQ 59
Cdd:TIGR02492   1 SLLNIAKSGLSASQIALSVTSNNIANANTPGYSRQRAVLtavpAGGQGGKQIGTGVKVTSIRR 63
flgK PRK12715
flagellar hook-associated protein FlgK; Provisional
 6-60 1.17e-03

flagellar hook-associated protein FlgK; Provisional


Pssm-ID: 183698 [Multi-domain]  Cd Length: 649  Bit Score: 41.26  E-value: 1.17e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 16129039    6 AVSGLNAAATNLDVIGNNIANSATYGFKSGTASF----ADMFAGSKVGLGVKVAGITQD 60
Cdd:PRK12715   7 AYSGLNAFQRALDVTGNNIANFKTRGYSRQSIQFtpiaSNRYAGSYIGAGVSVSSIYRN 65
flgC PRK12632
flagellar basal body rod protein FlgC; Provisional
 2-60 2.13e-03

flagellar basal body rod protein FlgC; Provisional


Pssm-ID: 183637 [Multi-domain]  Cd Length: 130  Bit Score: 37.86  E-value: 2.13e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 16129039    2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQD 60
Cdd:PRK12632   7 SLSVSASGMRAQALRLRHVSENIANADTPGYRRKTVSFQEARDFDPGSGLVSTGPVRLD 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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