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Conserved domains on  [gi|16129194|ref|NP_415749|]
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NTF2-like domain-containing protein YchJ [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

YchJ family protein( domain architecture ID 11479692)

YchJ family protein similar to Escherichia coli UPF0225 protein YchJ

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK01617 PRK01617
hypothetical protein; Provisional
 1-152 4.64e-112

hypothetical protein; Provisional


:

Pssm-ID: 234966  Cd Length: 154  Bit Score: 314.28  E-value: 4.64e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129194    1 MSQLCPCGSAVEYSLCCHPYVSGEKVAPDPEHLMRSRYCAFVMQDADYLIKTWHPSCGAAALRAELMAGFAHTEWLGLTV 80
Cdd:PRK01617   1 MSQLCPCGSALEYSLCCQPYLSGEKVAPDPEHLMRSRYCAFVMKDADYLIKTWHPDCHAAAWRAEIIAGFANTEWLGLTV 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16129194   81 FEHCWQDADNIGFVSFVARFTEGGKTG--AIIERSRFLKENGQWYYIDGTRPQFGRNDPCPCGSGKKFKKCCGQ 152
Cdd:PRK01617  81 FEHTWGDADNEGFVEFVARFTEGGKTGrtAIIERSRFLKENGQWYYIDGTRPQFGRNDPCPCGSGKKFKKCCGQ 154
 
Name Accession Description Interval E-value
PRK01617 PRK01617
hypothetical protein; Provisional
 1-152 4.64e-112

hypothetical protein; Provisional


Pssm-ID: 234966  Cd Length: 154  Bit Score: 314.28  E-value: 4.64e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129194    1 MSQLCPCGSAVEYSLCCHPYVSGEKVAPDPEHLMRSRYCAFVMQDADYLIKTWHPSCGAAALRAELMAGFAHTEWLGLTV 80
Cdd:PRK01617   1 MSQLCPCGSALEYSLCCQPYLSGEKVAPDPEHLMRSRYCAFVMKDADYLIKTWHPDCHAAAWRAEIIAGFANTEWLGLTV 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16129194   81 FEHCWQDADNIGFVSFVARFTEGGKTG--AIIERSRFLKENGQWYYIDGTRPQFGRNDPCPCGSGKKFKKCCGQ 152
Cdd:PRK01617  81 FEHTWGDADNEGFVEFVARFTEGGKTGrtAIIERSRFLKENGQWYYIDGTRPQFGRNDPCPCGSGKKFKKCCGQ 154
YchJ COG3012
Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function ...
 3-148 6.44e-77

Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function unknown];


Pssm-ID: 442249  Cd Length: 144  Bit Score: 225.11  E-value: 6.44e-77
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129194   3 QLCPCGSAVEYSLCCHPYVSGEKVAPDPEHLMRSRYCAFVMQDADYLIKTWHPSCGAAALRAELMAGFAHTEWLGLTVFE 82
Cdd:COG3012   4 SPCPCGSGKPYADCCGPYHAGAAPAPTAEALMRSRYSAFVLGDADYLLATWHPSTRPALLRLEIEAWAPGTQWLGLEILA 83

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16129194  83 HCWQDADNIGFVSFVARFTEGGKTGAIIERSRFLKENGQWYYIDGT-RPQFGRndpcpcGSGKKFKK 148
Cdd:COG3012  84 TEAGPDDDEGTVEFVARYREGGRAGRLHERSRFVREDGRWYYVDGEvAPKPGR------GSGKKFKK 144
UPF0225 pfam17775
UPF0225 domain; This entry represents an NTF2-like domain found in bacterial proteins.
 29-127 3.68e-51

UPF0225 domain; This entry represents an NTF2-like domain found in bacterial proteins.


Pssm-ID: 465498  Cd Length: 99  Bit Score: 158.11  E-value: 3.68e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129194    29 DPEHLMRSRYCAFVMQDADYLIKTWHPSCGAAALRAELMAGFAHTEWLGLTVFEHCWQDADNIGFVSFVARFTEGGKTGA 108
Cdd:pfam17775   1 TAEALMRSRYSAYVLGDIDYLLATTHPDTRPALDRAELEEWAQSTKWLGLEILSTEAGPDDDEGFVEFKARYREGGQLQT 80

                          90
                  ....*....|....*....
gi 16129194   109 IIERSRFLKENGQWYYIDG 127
Cdd:pfam17775  81 LHERSRFVREDGRWYYVDG 99
SWIM_PBPRA1643 TIGR04102
SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have ...
 133-151 1.33e-11

SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have a SWIM, or SEC-C, domain (see pfam02810), a 21-amino acid putative Zn-binding domain that is shared with SecA, plant MuDR transposases, etc. This small protein family of unknown function occurs primarily in marine bacteria.


Pssm-ID: 200353 [Multi-domain]  Cd Length: 108  Bit Score: 57.70  E-value: 1.33e-11
                          10
                  ....*....|....*....
gi 16129194   133 GRNDPCPCGSGKKFKKCCG 151
Cdd:TIGR04102  90 NRNDPCPCGSGKKYKKCCG 108
 
Name Accession Description Interval E-value
PRK01617 PRK01617
hypothetical protein; Provisional
 1-152 4.64e-112

hypothetical protein; Provisional


Pssm-ID: 234966  Cd Length: 154  Bit Score: 314.28  E-value: 4.64e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129194    1 MSQLCPCGSAVEYSLCCHPYVSGEKVAPDPEHLMRSRYCAFVMQDADYLIKTWHPSCGAAALRAELMAGFAHTEWLGLTV 80
Cdd:PRK01617   1 MSQLCPCGSALEYSLCCQPYLSGEKVAPDPEHLMRSRYCAFVMKDADYLIKTWHPDCHAAAWRAEIIAGFANTEWLGLTV 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16129194   81 FEHCWQDADNIGFVSFVARFTEGGKTG--AIIERSRFLKENGQWYYIDGTRPQFGRNDPCPCGSGKKFKKCCGQ 152
Cdd:PRK01617  81 FEHTWGDADNEGFVEFVARFTEGGKTGrtAIIERSRFLKENGQWYYIDGTRPQFGRNDPCPCGSGKKFKKCCGQ 154
YchJ COG3012
Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function ...
 3-148 6.44e-77

Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function unknown];


Pssm-ID: 442249  Cd Length: 144  Bit Score: 225.11  E-value: 6.44e-77
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129194   3 QLCPCGSAVEYSLCCHPYVSGEKVAPDPEHLMRSRYCAFVMQDADYLIKTWHPSCGAAALRAELMAGFAHTEWLGLTVFE 82
Cdd:COG3012   4 SPCPCGSGKPYADCCGPYHAGAAPAPTAEALMRSRYSAFVLGDADYLLATWHPSTRPALLRLEIEAWAPGTQWLGLEILA 83

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16129194  83 HCWQDADNIGFVSFVARFTEGGKTGAIIERSRFLKENGQWYYIDGT-RPQFGRndpcpcGSGKKFKK 148
Cdd:COG3012  84 TEAGPDDDEGTVEFVARYREGGRAGRLHERSRFVREDGRWYYVDGEvAPKPGR------GSGKKFKK 144
PRK02250 PRK02250
hypothetical protein; Provisional
 4-151 6.43e-52

hypothetical protein; Provisional


Pssm-ID: 179393 [Multi-domain]  Cd Length: 166  Bit Score: 162.35  E-value: 6.43e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129194    4 LCPCGSAVEYSLCCHPYVSGEKVAPDPEHLMRSRYCAFVMQDADYLIKTWHPSCGAAALRaELMAGFAHTEWLGLTVFEH 83
Cdd:PRK02250   3 SCPCGSTQTYSQCCEPIHLNHASAQTPEQLMRSRYSAHVLGLVDYVVETYHPSCNAEEQR-EGIAESIHSDWLKLEVIKT 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129194   84 CWQDADNIGFVSFVARFTEGGKTGAIIERSRFLKENGQWYYIDGTRPQ-----------------FGRNDPCPCGSGKKF 146
Cdd:PRK02250  82 EAGSTPNEGFVEFKAYFDEEGKRYCLEERSRFLKENGLWYYIDGTFPEeepeqdprlnqsvsslkQGRNDPCICGSGKKF 161


                 ....*
gi 16129194  147 KKCCG 151
Cdd:PRK02250 162 KKCCG 166
UPF0225 pfam17775
UPF0225 domain; This entry represents an NTF2-like domain found in bacterial proteins.
 29-127 3.68e-51

UPF0225 domain; This entry represents an NTF2-like domain found in bacterial proteins.


Pssm-ID: 465498  Cd Length: 99  Bit Score: 158.11  E-value: 3.68e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129194    29 DPEHLMRSRYCAFVMQDADYLIKTWHPSCGAAALRAELMAGFAHTEWLGLTVFEHCWQDADNIGFVSFVARFTEGGKTGA 108
Cdd:pfam17775   1 TAEALMRSRYSAYVLGDIDYLLATTHPDTRPALDRAELEEWAQSTKWLGLEILSTEAGPDDDEGFVEFKARYREGGQLQT 80

                          90
                  ....*....|....*....
gi 16129194   109 IIERSRFLKENGQWYYIDG 127
Cdd:pfam17775  81 LHERSRFVREDGRWYYVDG 99
PRK00183 PRK00183
hypothetical protein; Provisional
 5-151 2.70e-38

hypothetical protein; Provisional


Pssm-ID: 166842  Cd Length: 157  Bit Score: 127.61  E-value: 2.70e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129194    5 CPCGSAVEYSLCCHPYVSGEKvAPDPEHLMRSRYCAFVMQDADYLIKTWHPSCGAAALRAELMAGFAHTEWLGLTVFEH- 83
Cdd:PRK00183   6 CPCGSGDLLDACCGRYHAGHP-APCAEALMRSRYSAYVLGLVDYLVATTLPAQQAGLDRAAIAAWSAQSTWLGLEVESSe 84

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16129194   84 CWQDADNIGFVSFVARFTEGGKTGAIIERSRFLKENGQWYYIDGTRP-QFGRNDPCPCGSGKKFKKCCG 151
Cdd:PRK00183  85 VLGGQPEHAFVTFTARWHDADGEHSHRERSAFVQHQGRWYFIDPTVPlKAGRNDPCPCGSGQKFKKCCA 153
PRK01752 PRK01752
YchJ family protein;
1-151 6.59e-37

YchJ family protein;


Pssm-ID: 179332  Cd Length: 156  Bit Score: 124.13  E-value: 6.59e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129194    1 MSQLCPCGSAVEYSLCCHPYVSGEKVAPDPEHLMRSRYCAFVMQDADYLIKTWHPSCGAAALRAELMAGFAHTEWLGLTV 80
Cdd:PRK01752   4 LLEACPCQSGKHYADCCGPFHLRQAFPETAEQLMRSRYAAYVLKNIDYIVETTVPSQQTLLDPAALQTWAENTTWLGLEI 83

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16129194   81 FEHcwqdaDNIG----FVSFVARFTEGGKTGAIIERSRFLKENGQWYYIDGTRPQFGRNDPCPCGSGKKFKKCCG 151
Cdd:PRK01752  84 LAH-----ESLTkihsAVEFKAIFQGEEGEQAHHERSLFVKIDNRWYFVDPTVPLPTMKQPCVCGSGKKFKHCCG 153
PRK01842 PRK01842
hypothetical protein; Provisional
 5-127 7.48e-35

hypothetical protein; Provisional


Pssm-ID: 234985  Cd Length: 149  Bit Score: 118.37  E-value: 7.48e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129194    5 CPCGSAV----------EYSLCCHPYVSGEKVAPDPEHLMRSRYCAFVMQDADYLIKTWHPSCGAAALRAELMAGFAhTE 74
Cdd:PRK01842  14 CPCGGAApgaaanarapRYAACCGRFIDGGAAAPTALELMRSRYSAYVLGATDYLRATWDPSTCPADLDADPAAADA-PR 92

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 16129194   75 WLGLTVFEHCWQDADNiGFVSFVARFTEGGKTGAIIERSRFLK-ENGQWYYIDG 127
Cdd:PRK01842  93 WLGLAIKRHAQLDATH-AEVEFVARYKVGGRAHRLHETSRFVRdEQGRWRYVDG 145
PRK04233 PRK04233
hypothetical protein; Provisional
 5-126 2.66e-33

hypothetical protein; Provisional


Pssm-ID: 235261  Cd Length: 129  Bit Score: 113.87  E-value: 2.66e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129194    5 CPCGSAVEYSLCCHPYVSGEkVAPDPEHLMRSRYCAFVMQDADYLIKTWHPSCGAAALRaelMAGFAHTEWLGLTVFEHC 84
Cdd:PRK04233  10 CPCGRPADYARCCGPYHAGA-AAPDAETLMRARYSAYVRRDADYLLASWHPSTRPAELS---LDEGGRTTWLGLTVQRTL 85

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 16129194   85 WQDADNiGFVSFVARFTEGGKTGA-IIERSRFLKENGQWYYID 126
Cdd:PRK04233  86 ETGADT-AEVVFLARYRIGGGSAVrMTEHSRFVREDGRWYYLD 127
PRK05590 PRK05590
hypothetical protein; Provisional
 133-151 2.35e-12

hypothetical protein; Provisional


Pssm-ID: 235521  Cd Length: 166  Bit Score: 60.75  E-value: 2.35e-12
                         10
                 ....*....|....*....
gi 16129194  133 GRNDPCPCGSGKKFKKCCG 151
Cdd:PRK05590 146 GRNDPCPCGSGKKYKKCCG 164
SecA COG0653
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, ...
 130-152 9.15e-12

Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440418 [Multi-domain]  Cd Length: 876  Bit Score: 61.59  E-value: 9.15e-12
                        10        20
                ....*....|....*....|...
gi 16129194 130 PQFGRNDPCPCGSGKKFKKCCGQ 152
Cdd:COG0653 852 PKVGRNDPCPCGSGKKYKHCHGK 874
SWIM_PBPRA1643 TIGR04102
SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have ...
 133-151 1.33e-11

SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have a SWIM, or SEC-C, domain (see pfam02810), a 21-amino acid putative Zn-binding domain that is shared with SecA, plant MuDR transposases, etc. This small protein family of unknown function occurs primarily in marine bacteria.


Pssm-ID: 200353 [Multi-domain]  Cd Length: 108  Bit Score: 57.70  E-value: 1.33e-11
                          10
                  ....*....|....*....
gi 16129194   133 GRNDPCPCGSGKKFKKCCG 151
Cdd:TIGR04102  90 NRNDPCPCGSGKKYKKCCG 108
YecA COG3318
Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C ...
 133-152 3.40e-10

Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C motif [Function unknown];


Pssm-ID: 442547 [Multi-domain]  Cd Length: 45  Bit Score: 52.21  E-value: 3.40e-10
                        10        20
                ....*....|....*....|
gi 16129194 133 GRNDPCPCGSGKKFKKCCGQ 152
Cdd:COG3318  25 GRNDPCPCGSGKKYKKCCGA 44
PRK10396 PRK10396
hypothetical protein; Provisional
 131-150 1.13e-08

hypothetical protein; Provisional


Pssm-ID: 236680 [Multi-domain]  Cd Length: 221  Bit Score: 51.67  E-value: 1.13e-08
                         10        20
                 ....*....|....*....|
gi 16129194  131 QFGRNDPCPCGSGKKFKKCC 150
Cdd:PRK10396 200 KVGRNDPCPCGSGKKFKQCC 219
SEC-C pfam02810
SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of ...
 134-151 5.29e-08

SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of some SWI2 ATPases and also solo in several proteins. The motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain.


Pssm-ID: 460704 [Multi-domain]  Cd Length: 19  Bit Score: 46.32  E-value: 5.29e-08
                          10
                  ....*....|....*...
gi 16129194   134 RNDPCPCGSGKKFKKCCG 151
Cdd:pfam02810   1 RNDPCPCGSGKKYKKCCG 18
PRK12904 PRK12904
preprotein translocase subunit SecA; Reviewed
 136-152 9.63e-08

preprotein translocase subunit SecA; Reviewed


Pssm-ID: 237259 [Multi-domain]  Cd Length: 830  Bit Score: 50.08  E-value: 9.63e-08
                         10
                 ....*....|....*..
gi 16129194  136 DPCPCGSGKKFKKCCGQ 152
Cdd:PRK12904 812 DPCPCGSGKKYKHCHGR 828
YchJ COG3012
Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function ...
 133-151 3.02e-05

Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function unknown];


Pssm-ID: 442249  Cd Length: 144  Bit Score: 41.37  E-value: 3.02e-05
                        10
                ....*....|....*....
gi 16129194 133 GRNDPCPCGSGKKFKKCCG 151
Cdd:COG3012   1 PSNSPCPCGSGKPYADCCG 19
secA PRK12901
preprotein translocase subunit SecA; Reviewed
 128-152 2.06e-04

preprotein translocase subunit SecA; Reviewed


Pssm-ID: 237256 [Multi-domain]  Cd Length: 1112  Bit Score: 40.39  E-value: 2.06e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 16129194   128 TRPQFGRNDPCPC-----GSGKKFKKCCGQ 152
Cdd:PRK12901 1071 VEKKIGRNDPVPCqnvdgGSGKKYKFKHAE 1100
PRK12318 PRK12318
methionyl aminopeptidase;
133-149 2.62e-04

methionyl aminopeptidase;


Pssm-ID: 183434 [Multi-domain]  Cd Length: 291  Bit Score: 39.80  E-value: 2.62e-04
                         10
                 ....*....|....*..
gi 16129194  133 GRNDPCPCGSGKKFKKC 149
Cdd:PRK12318   2 KRNDPCWCGSGKKWKHC 18
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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