|
Name |
Accession |
Description |
Interval |
E-value |
| PRK15406 |
PRK15406 |
oligopeptide ABC transporter permease OppC; Provisional |
1-302 |
0e+00 |
|
oligopeptide ABC transporter permease OppC; Provisional
Pssm-ID: 185304 [Multi-domain] Cd Length: 302 Bit Score: 562.15 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129206 1 MMLSKKNSETLENFSEKLEVEGRSLWQDARRRFMHNRAAVASLIVLVLIALFVILAPMLSQFAYDDTDWAMMSSAPDMES 80
Cdd:PRK15406 1 MMLSKKNSEALENFSEKLEVEGRSLWQDARRRFMHNRAAVASLIVLVLIALFVILAPMLSQFAYDDTDWGMMSSAPDMES 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129206 81 GHYFGTDSSGRDLLVRVAIGGRISLMVGVAAALVAVVVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFF 160
Cdd:PRK15406 81 GHYFGTDSSGRDLLVRVAIGGRISLMVGVAAALVAVVVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129206 161 GQNILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTSGIVIRHIVPNVLGVVVVYASLLVPSMILFESFL 240
Cdd:PRK15406 161 GQNILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTRGIVLRHIVPNVLGVVVVYASLLVPSMILFESFL 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16129206 241 SFLGLGTQEPLSSWGALLSDGANSMEVSPWLLLFPAGFLVVTLFCFNFIGDGLRDALDPKDR 302
Cdd:PRK15406 241 SFLGLGTQEPLSSWGALLSDGANSMEVSPWLLLFPAGFLVVTLFCFNFIGDGLRDALDPKDR 302
|
|
| DppC |
COG1173 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
22-298 |
1.77e-100 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440786 [Multi-domain] Cd Length: 275 Bit Score: 295.87 E-value: 1.77e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129206 22 GRSLWQDARRRFMHNRAAVASLIVLVLIALFVILAPMLSQFAYDDTDWAMMSSAPDMEsgHYFGTDSSGRDLLVRVAIGG 101
Cdd:COG1173 1 PRSRWRRAWRRLRRNPLAVIGLVILLLLVLLALFAPLLAPYDPTAQDLAARLQPPSAA--HWLGTDQLGRDVLSRLLYGA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129206 102 RISLMVGVAAALVAVVVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMAR 181
Cdd:COG1173 79 RISLLVGLLAVLIALVIGVLLGLLAGYFGGWVDAVLMRLVDVLLAFPSLLLAIALVAVLGPGLLNVILALGLTGWPGYAR 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129206 182 IVRGQTLSLKRKEFIEAAQVGGVSTSGIVIRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDG 261
Cdd:COG1173 159 LVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIASAILAEAGLSFLGLGVQPPTPSWGTMLSEG 238
|
250 260 270
....*....|....*....|....*....|....*..
gi 16129206 262 ANSMEVSPWLLLFPAGFLVVTLFCFNFIGDGLRDALD 298
Cdd:COG1173 239 RNYLLTAPWLALFPGLAIVLTVLAFNLLGDGLRDALD 275
|
|
| OppC_N |
pfam12911 |
N-terminal TM domain of oligopeptide transport permease C; Oligopeptide permeases (Opp) have ... |
24-76 |
3.33e-15 |
|
N-terminal TM domain of oligopeptide transport permease C; Oligopeptide permeases (Opp) have been identified in numerous gram-negative and -positive bacteria. These transport systems belong to the superfamily of highly conserved ATP-binding cassette transporters. Typically, Opp importers comprise a complex of five proteins. The oligopeptide-binding protein OppA is responsible for the capture of peptides from the external medium. Two integral highly hydrophobic membrane spanning proteins, OppB and OppC, form a channel through the membrane used for peptide translocation. This N-terminal domain appears to be the first TM domain of the molecule.
Pssm-ID: 463747 [Multi-domain] Cd Length: 53 Bit Score: 68.59 E-value: 3.33e-15
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 16129206 24 SLWQDARRRFMHNRAAVASLIVLVLIALFVILAPMLSQFAYDDTDWAMMSSAP 76
Cdd:pfam12911 1 SPWQDAWRRFRRNKLAMVGLVILLLLVLLAIFAPLLAPYDPDQQDLSADLLPP 53
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
120-283 |
2.30e-09 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 55.75 E-value: 2.30e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129206 120 TLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQN--------ILLIFVAIGMVSWLDMARIVRGQTLSLK 191
Cdd:cd06261 20 LLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLlgwgilpgLGLPALILALLLIAPFARLIRRAALESI 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129206 192 RKEFIEAAQVGGVSTSGIVIRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLsSWGALLSDGANSMEVSPWL 271
Cdd:cd06261 100 PKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGP-GTGLLLIFAILFPGDLGVA 178
|
170
....*....|..
gi 16129206 272 LLFPAGFLVVTL 283
Cdd:cd06261 179 AAVALILLLLSL 190
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK15406 |
PRK15406 |
oligopeptide ABC transporter permease OppC; Provisional |
1-302 |
0e+00 |
|
oligopeptide ABC transporter permease OppC; Provisional
Pssm-ID: 185304 [Multi-domain] Cd Length: 302 Bit Score: 562.15 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129206 1 MMLSKKNSETLENFSEKLEVEGRSLWQDARRRFMHNRAAVASLIVLVLIALFVILAPMLSQFAYDDTDWAMMSSAPDMES 80
Cdd:PRK15406 1 MMLSKKNSEALENFSEKLEVEGRSLWQDARRRFMHNRAAVASLIVLVLIALFVILAPMLSQFAYDDTDWGMMSSAPDMES 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129206 81 GHYFGTDSSGRDLLVRVAIGGRISLMVGVAAALVAVVVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFF 160
Cdd:PRK15406 81 GHYFGTDSSGRDLLVRVAIGGRISLMVGVAAALVAVVVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129206 161 GQNILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTSGIVIRHIVPNVLGVVVVYASLLVPSMILFESFL 240
Cdd:PRK15406 161 GQNILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTRGIVLRHIVPNVLGVVVVYASLLVPSMILFESFL 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16129206 241 SFLGLGTQEPLSSWGALLSDGANSMEVSPWLLLFPAGFLVVTLFCFNFIGDGLRDALDPKDR 302
Cdd:PRK15406 241 SFLGLGTQEPLSSWGALLSDGANSMEVSPWLLLFPAGFLVVTLFCFNFIGDGLRDALDPKDR 302
|
|
| DppC |
COG1173 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
22-298 |
1.77e-100 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440786 [Multi-domain] Cd Length: 275 Bit Score: 295.87 E-value: 1.77e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129206 22 GRSLWQDARRRFMHNRAAVASLIVLVLIALFVILAPMLSQFAYDDTDWAMMSSAPDMEsgHYFGTDSSGRDLLVRVAIGG 101
Cdd:COG1173 1 PRSRWRRAWRRLRRNPLAVIGLVILLLLVLLALFAPLLAPYDPTAQDLAARLQPPSAA--HWLGTDQLGRDVLSRLLYGA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129206 102 RISLMVGVAAALVAVVVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMAR 181
Cdd:COG1173 79 RISLLVGLLAVLIALVIGVLLGLLAGYFGGWVDAVLMRLVDVLLAFPSLLLAIALVAVLGPGLLNVILALGLTGWPGYAR 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129206 182 IVRGQTLSLKRKEFIEAAQVGGVSTSGIVIRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDG 261
Cdd:COG1173 159 LVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIASAILAEAGLSFLGLGVQPPTPSWGTMLSEG 238
|
250 260 270
....*....|....*....|....*....|....*..
gi 16129206 262 ANSMEVSPWLLLFPAGFLVVTLFCFNFIGDGLRDALD 298
Cdd:COG1173 239 RNYLLTAPWLALFPGLAIVLTVLAFNLLGDGLRDALD 275
|
|
| PRK15082 |
PRK15082 |
glutathione ABC transporter permease GsiD; Provisional |
23-300 |
1.99e-54 |
|
glutathione ABC transporter permease GsiD; Provisional
Pssm-ID: 185040 [Multi-domain] Cd Length: 301 Bit Score: 179.15 E-value: 1.99e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129206 23 RSLWQDARRRFMHNRAAVASLIVLVLIALFVILAPMLSQF-AYDDTDWAMMSSAPDMEsgHYFGTDSSGRDLLVRVAIGG 101
Cdd:PRK15082 22 RTPWHEFWRRFRRQHVALVAGLFVLLLIVVAIFAPWIAPYdAENYFDYDALNAGPSLQ--HWFGVDSLGRDIFSRILVGA 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129206 102 RISLMVGVAAALVAVVVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMAR 181
Cdd:PRK15082 100 RISLAAGFFSVAIGAAIGTVLGLLAGYYEGWWDRIIMRICDVLFAFPGILLAIAVVAILGSGMANVIIAVAIFSIPAFAR 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129206 182 IVRGQTLSLKRKEFIEAAQVGGVSTSGIVIRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDG 261
Cdd:PRK15082 180 LVRGNTLVLKQQTYIESARSIGASDWTILLRHILPGTVSSIVVYFTMRIGTSIITAASLSFLGLGAQPPTPEWGAMLNEA 259
|
250 260 270
....*....|....*....|....*....|....*....
gi 16129206 262 ANSMEVSPWLLLFPAGFLVVTLFCFNFIGDGLRDALDPK 300
Cdd:PRK15082 260 RADMVIAPHVALFPSLAIFLTVLAFNLLGDGLRDALDPK 298
|
|
| PRK09881 |
PRK09881 |
D,D-dipeptide ABC transporter permease; |
40-300 |
4.57e-46 |
|
D,D-dipeptide ABC transporter permease;
Pssm-ID: 182131 [Multi-domain] Cd Length: 296 Bit Score: 157.29 E-value: 4.57e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129206 40 VASLIVLVLIALFVILAPMLSQFAYDDTDWAMMSSAPDMEsgHYFGTDSSGRDLLVRVAIGGRISLMVGVAAALVAVVVG 119
Cdd:PRK09881 34 VTGAVIIVLMLLMMIFSPWLATHDPNAIDLTARLLPPSAA--HWFGTDEVGRDLFSRVLVGSQQSILAGLVVVAIAGMIG 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129206 120 TLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAA 199
Cdd:PRK09881 112 SLLGCLSGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFNAMLAIAIVRIPFYVRLARGQALVVRQYTYVQAA 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129206 200 QVGGVSTSGIVIRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDGANSMEVSPWLLLFPAGFL 279
Cdd:PRK09881 192 KTFGASRWHLISWHILRNSLPPLIVQASLDIGSAILMAATLGFIGLGAQQPSAEWGAMVANGRNYVLDQWWYCAFPGAAI 271
|
250 260
....*....|....*....|.
gi 16129206 280 VVTLFCFNFIGDGLRDALDPK 300
Cdd:PRK09881 272 LLTAVGFNLFGDGIRDLLDPK 292
|
|
| nikC |
PRK10417 |
nickel transporter permease NikC; Provisional |
41-299 |
5.46e-46 |
|
nickel transporter permease NikC; Provisional
Pssm-ID: 236687 [Multi-domain] Cd Length: 272 Bit Score: 156.37 E-value: 5.46e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129206 41 ASLIVLVLIALFVILAPMLSQFAYDDTDWAMMSSAPDMEsgHYFGTDSSGRDLLVRVAIGGRISLMVGVAAALVAVVVGT 120
Cdd:PRK10417 8 LALIIIALLALIALTSQWWLPYDPQAIDLPSRLLSPDAQ--HWLGTDHLGRDIFSRLMAGTRVSLGSVMACLLLVLALGL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129206 121 LYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQ 200
Cdd:PRK10417 86 VIGGSAGLLGGRVDQATMRVADMFMTFPTSILAFFMVGVLGTGLTNVIIAIALSHWAWYARMVRSLVISLRQREFVLAAR 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129206 201 VGGVSTSGIVIRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDGANSMEVSPWLLLFPAGFLV 280
Cdd:PRK10417 166 LSGAGHVRVFIDHLLPAVIPQLLVLATLDIGHMMLHVAGLSFLGLGVTAPTAEWGVMINDARQYIWTQPLLMFWPGLALF 245
|
250
....*....|....*....
gi 16129206 281 VTLFCFNFIGDGLRDALDP 299
Cdd:PRK10417 246 ISVMAFNLLGDALRDHLDP 264
|
|
| YejE |
COG4239 |
ABC-type microcin C transport system, permease component YejE [Secondary metabolites ... |
74-300 |
7.88e-39 |
|
ABC-type microcin C transport system, permease component YejE [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443381 [Multi-domain] Cd Length: 342 Bit Score: 139.52 E-value: 7.88e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129206 74 SAPDMEsgHYFGTDSSGRDLLVRVAIGGRISLMVGVAAALVAVVVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFV 153
Cdd:COG4239 115 SPPSAE--NWLGTDDQGRDVLARLIYGFRISVLFGLALTVISSVIGVAAGAVQGYFGGRVDLLFQRFIEIWSSMPELYLL 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129206 154 ILLVTFFGQNILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTSGIVIRHIVPNVLGVVVVYASLLVPSM 233
Cdd:COG4239 193 IILSSIFQPSFWLLLGILLLFGWMGLVGVVRAEFLRARNLEYVRAARALGVSDRRIMFRHILPNAMVATLTFLPFILSGA 272
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16129206 234 ILFESFLSFLGLGTQEPLSSWGALLSDGANSMEvSPWLLLFPAGFLVVTLFCFNFIGDGLRDALDPK 300
Cdd:COG4239 273 ITTLTSLDFLGFGLPPGSPSLGELLAQGKNNLQ-APWLGLSAFVVLALMLSLLVFIGEAVRDAFDPR 338
|
|
| PRK10913 |
PRK10913 |
dipeptide ABC transporter permease DppC; |
33-300 |
1.87e-37 |
|
dipeptide ABC transporter permease DppC;
Pssm-ID: 182833 [Multi-domain] Cd Length: 300 Bit Score: 134.91 E-value: 1.87e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129206 33 FMHNRAAVASLIVLVLIALFVILAPMLSQFAYDDTDWAMMSSAPDMESG----HYFGTDSSGRDLLVRVAIGGRISLMVG 108
Cdd:PRK10913 26 FKRNKGAVVGLVYVVIMLFIAIFANWIAPHNPAEQFRDALLAPPVWQEGgswaHILGTDDVGRDVLSRLMYGARLSLLVG 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129206 109 VAAALVAVVVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMARIVRGQTL 188
Cdd:PRK10913 106 CLVVVLSLVMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPSIVNAALALTFVALPHYVRLTRAAVL 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129206 189 SLKRKEFIEAAQVGGVSTSGIVIRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDGANSMEVS 268
Cdd:PRK10913 186 VEVNRDYVTASRVAGAGAMRQMFINILPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQSA 265
|
250 260 270
....*....|....*....|....*....|..
gi 16129206 269 PWLLLFPAGFLVVTLFCFNFIGDGLRDALDPK 300
Cdd:PRK10913 266 WWVVTFPGLAILLTVLAFNLMGDGLRDALDPK 297
|
|
| PRK15021 |
PRK15021 |
microcin C ABC transporter permease; Provisional |
52-299 |
4.99e-31 |
|
microcin C ABC transporter permease; Provisional
Pssm-ID: 184982 [Multi-domain] Cd Length: 341 Bit Score: 118.93 E-value: 4.99e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129206 52 FVILAPMlsQFAYDDTDWAMMSSAPDMESG-HYFGTDSSGRDLLVRVAIGGRISLMVGVAAALVAVVVGTLYGSLSGYLG 130
Cdd:PRK15021 92 WVLWAPI--RFGATSINFATDKPFPSPPSRqNWLGTDANGGDVLARILYGTRISVLFGLMLTLCSSVMGVLAGALQGYYG 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129206 131 GKVDSVMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTSGIV 210
Cdd:PRK15021 170 GKVDLWGQRFIEVWSGMPTLFLIILLSSVVQPNFWWLLAITVLFGWMSLVGVVRAEFLRTRNFDYIRAAQALGVSDRSII 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129206 211 IRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDGANSMEvSPWLLLfpAGFLVVT--LFCFNF 288
Cdd:PRK15021 250 LRHMLPNAMVATLTFLPFILCSSITTLTSLDFLGFGLPLGSPSLGELLLQGKNNLQ-APWLGI--TAFLSVAilLSLLIF 326
|
250
....*....|.
gi 16129206 289 IGDGLRDALDP 299
Cdd:PRK15021 327 IGEAVRDAFDP 337
|
|
| SapC |
COG4171 |
ABC-type antimicrobial peptide export system, permease component SapC [Defense mechanisms]; |
31-298 |
4.52e-26 |
|
ABC-type antimicrobial peptide export system, permease component SapC [Defense mechanisms];
Pssm-ID: 443331 [Multi-domain] Cd Length: 296 Bit Score: 104.51 E-value: 4.52e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129206 31 RRFMHNRAAVASLIVLVLIALFVILAPMLSQFAYDDTDWAMMSSAPDMESG----HYFGTDSSGRDLLVRVAIGGRISLM 106
Cdd:COG4171 21 QSFRKNPLAMIGLYGFLFLILLALFGPLLAPYSPDQQFIGALLLPPSWDDNgdvsFFLGTDDLGRDILSRLLYGARYTFG 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129206 107 VGVAAALVAVVVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMARIVRGQ 186
Cdd:COG4171 101 SALLVVLAAAIIGGIIGILAGMSRGLKSSILNHLLDTLLSIPSLLLAIIIVALLGPGLENAMLAITLALLPQFIHAIYQA 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129206 187 TLSLKRKEFIEAAQVGGVSTSGIVIRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDGANSME 266
Cdd:COG4171 181 VHQELKKEYVLAARLDGASNWQLLRYSILPNILEVLVTELTRALSIAILDISALGFLGLGAQLPSPEWGAMLGDSLELIY 260
|
250 260 270
....*....|....*....|....*....|..
gi 16129206 267 VSPWLLLFPAGFLVVTLFCFNFIGDGLRDALD 298
Cdd:COG4171 261 LAPWTVILPGLAIMFSVLIVNLVGDGLRRALN 292
|
|
| PRK15111 |
PRK15111 |
peptide ABC transporter permease SapC; |
24-298 |
1.31e-16 |
|
peptide ABC transporter permease SapC;
Pssm-ID: 185066 [Multi-domain] Cd Length: 296 Bit Score: 78.20 E-value: 1.31e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129206 24 SLWQDARRRFMHNRAAVASLIVLVLIALFVILAPMLSQFAYDDTDWAMMSSAPDM----ESGHYFGTDSSGRDLLVRVAI 99
Cdd:PRK15111 14 GTLRTAWRKFYSDALAMVGLYGCAGLALLCLFGGWLAPYGIDQQFLGYQLLPPSWsrygEVSFFLGTDDLGRDVLSRLLS 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129206 100 GGRISLMVGVAAALVAVVVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDM 179
Cdd:PRK15111 94 GAAPTVGGAFVVTLAATLCGLVLGVFAGATHGLRSAVLNHILDTLLSIPSLLLAIIVVAFAGPSLSHAMFAVWLALLPRM 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129206 180 ARIVRGQTLSLKRKEFIEAAQVGGVSTSGIVIRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLS 259
Cdd:PRK15111 174 VRSIYSAVHDELEKEYVIAARLDGASTLNILWYAVLPNITAGLVTEITRALSMAILDIAALGFLDLGAQLPSPEWGAMLG 253
|
250 260 270
....*....|....*....|....*....|....*....
gi 16129206 260 DGANSMEVSPWLLLFPAGFLVVTLFCFNFIGDGLRDALD 298
Cdd:PRK15111 254 DSLELIYVAPWTVMLPGAAIMLSVLLVNLLGDGIRRAII 292
|
|
| OppC_N |
pfam12911 |
N-terminal TM domain of oligopeptide transport permease C; Oligopeptide permeases (Opp) have ... |
24-76 |
3.33e-15 |
|
N-terminal TM domain of oligopeptide transport permease C; Oligopeptide permeases (Opp) have been identified in numerous gram-negative and -positive bacteria. These transport systems belong to the superfamily of highly conserved ATP-binding cassette transporters. Typically, Opp importers comprise a complex of five proteins. The oligopeptide-binding protein OppA is responsible for the capture of peptides from the external medium. Two integral highly hydrophobic membrane spanning proteins, OppB and OppC, form a channel through the membrane used for peptide translocation. This N-terminal domain appears to be the first TM domain of the molecule.
Pssm-ID: 463747 [Multi-domain] Cd Length: 53 Bit Score: 68.59 E-value: 3.33e-15
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 16129206 24 SLWQDARRRFMHNRAAVASLIVLVLIALFVILAPMLSQFAYDDTDWAMMSSAP 76
Cdd:pfam12911 1 SPWQDAWRRFRRNKLAMVGLVILLLLVLLAIFAPLLAPYDPDQQDLSADLLPP 53
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
128-300 |
4.38e-10 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 57.69 E-value: 4.38e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129206 128 YLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQNIL----LIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGG 203
Cdd:pfam00528 11 RRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILghgiLPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129206 204 VSTSGIVIRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEplsswGALLSDGANSMEVSpwLLLFPAGFLVVTL 283
Cdd:pfam00528 91 ASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGL-----GLLLIEAILGYDYP--EIQGPVLAAALIL 163
|
170
....*....|....*..
gi 16129206 284 FCFNFIGDGLRDALDPK 300
Cdd:pfam00528 164 LLLNLLVDILQRLLDPR 180
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
120-283 |
2.30e-09 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 55.75 E-value: 2.30e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129206 120 TLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQN--------ILLIFVAIGMVSWLDMARIVRGQTLSLK 191
Cdd:cd06261 20 LLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLlgwgilpgLGLPALILALLLIAPFARLIRRAALESI 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129206 192 RKEFIEAAQVGGVSTSGIVIRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLsSWGALLSDGANSMEVSPWL 271
Cdd:cd06261 100 PKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGP-GTGLLLIFAILFPGDLGVA 178
|
170
....*....|..
gi 16129206 272 LLFPAGFLVVTL 283
Cdd:cd06261 179 AAVALILLLLSL 190
|
|
| |
