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Conserved domains on  [gi|90111238|ref|NP_415775|]
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stress-induced bacterial acidophilic repeat motifs-containing protein YciG [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

general stress protein( domain architecture ID 10007922)

general stress protein similar to Bacillus subtilis glucose starvation-inducible protein B (GsiB) that is involved in an adaptive response to nutrient deprivation other than sporulation

Gene Ontology:  GO:0006950
PubMed:  21421783

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GsiB COG3729
General stress protein YciG, contains tandem KGG domains [General function prediction only];
3-58 2.54e-08

General stress protein YciG, contains tandem KGG domains [General function prediction only];


:

Pssm-ID: 442943 [Multi-domain]  Cd Length: 64  Bit Score: 44.68  E-value: 2.54e-08
                       10        20        30        40        50        60
               ....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111238  3 EHRGGSG----NFAEDREKASDAGRKGGQHSGGNFKNDPQRASEAGKKGGQQSGGNKSGK 58
Cdd:COG3729  5 AKRGGSGvekgNFAKDRERASEAGRKGGQHSGGNFANDPERASEAGRKGGQHSHGGKRSS 64
 
Name Accession Description Interval E-value
GsiB COG3729
General stress protein YciG, contains tandem KGG domains [General function prediction only];
3-58 2.54e-08

General stress protein YciG, contains tandem KGG domains [General function prediction only];


Pssm-ID: 442943 [Multi-domain]  Cd Length: 64  Bit Score: 44.68  E-value: 2.54e-08
                       10        20        30        40        50        60
               ....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111238  3 EHRGGSG----NFAEDREKASDAGRKGGQHSGGNFKNDPQRASEAGKKGGQQSGGNKSGK 58
Cdd:COG3729  5 AKRGGSGvekgNFAKDRERASEAGRKGGQHSGGNFANDPERASEAGRKGGQHSHGGKRSS 64
 
Name Accession Description Interval E-value
GsiB COG3729
General stress protein YciG, contains tandem KGG domains [General function prediction only];
3-58 2.54e-08

General stress protein YciG, contains tandem KGG domains [General function prediction only];


Pssm-ID: 442943 [Multi-domain]  Cd Length: 64  Bit Score: 44.68  E-value: 2.54e-08
                       10        20        30        40        50        60
               ....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111238  3 EHRGGSG----NFAEDREKASDAGRKGGQHSGGNFKNDPQRASEAGKKGGQQSGGNKSGK 58
Cdd:COG3729  5 AKRGGSGvekgNFAKDRERASEAGRKGGQHSGGNFANDPERASEAGRKGGQHSHGGKRSS 64
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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