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Conserved domains on  [gi|16129402|ref|NP_415960|]
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putative ABC transporter membrane subunit YdcV [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

ABC transporter permease( domain architecture ID 11439530)

ABC transporter permease is the transmembrane subunit found in a periplasmic binding protein (PBP)-dependent ABC transport system, which may be involved in the transport of one or more from a variety of substrates including sugars, ions, amino acids, and peptides, among others

Gene Ontology:  GO:0140359|GO:0042626|GO:0016020
PubMed:  18535149|17723295|25750732|24638992
TCDB:  3.A.1

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 5-261 4.50e-67

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


:

Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 208.81  E-value: 4.50e-67
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402   5 RAPFFLKLAAWGGVVFLHFPILIIAAYAFNTEDAaFSFPPQGLTLRWFSVAAQRSDILDAVTLSLKVAALATLIALVLGT 84
Cdd:COG1177   4 LGRLLLRLFLALVLLFLYLPILVLVLYSFNDSWF-LTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGT 82

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402  85 LAAAALWRRDFFGKNAISLLLLLPIALPGIVTGLALLTAFKTINLEPGFFTIVVGHATFCVVVVFNNVIARFRRTSWSLV 164
Cdd:COG1177  83 PAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSLE 162

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402 165 EASMDLGANGWQTFRYVVLPNLSSALLAGGMLAFALSFDEIIVTTFTAGHE-RTLPLWLLNQLgRPRDVPVTNVVALLVM 243
Cdd:COG1177 163 EAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGvTTLPVYIYSMI-RRGISPEINALSTLLI 241

                       250
                ....*....|....*...
gi 16129402 244 LVTTLPILGAWWLTREGD 261
Cdd:COG1177 242 LLSLLLLLLAERLRRRGE 259
 
Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 5-261 4.50e-67

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 208.81  E-value: 4.50e-67
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402   5 RAPFFLKLAAWGGVVFLHFPILIIAAYAFNTEDAaFSFPPQGLTLRWFSVAAQRSDILDAVTLSLKVAALATLIALVLGT 84
Cdd:COG1177   4 LGRLLLRLFLALVLLFLYLPILVLVLYSFNDSWF-LTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGT 82

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402  85 LAAAALWRRDFFGKNAISLLLLLPIALPGIVTGLALLTAFKTINLEPGFFTIVVGHATFCVVVVFNNVIARFRRTSWSLV 164
Cdd:COG1177  83 PAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSLE 162

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402 165 EASMDLGANGWQTFRYVVLPNLSSALLAGGMLAFALSFDEIIVTTFTAGHE-RTLPLWLLNQLgRPRDVPVTNVVALLVM 243
Cdd:COG1177 163 EAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGvTTLPVYIYSMI-RRGISPEINALSTLLI 241

                       250
                ....*....|....*...
gi 16129402 244 LVTTLPILGAWWLTREGD 261
Cdd:COG1177 242 LLSLLLLLLAERLRRRGE 259
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 19-259 6.20e-32

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 118.16  E-value: 6.20e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402   19 VFLHFPILIIAAYAFNteDAAFSFPPQGLTLRWFSVAAQRSDILDAVTLSLKVAALATLIALVLGTLAAAALWRRDFFGK 98
Cdd:PRK09500  15 AYLYIPIIILIVNSFN--SSRFGINWKGFTTKWYELLFNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGK 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402   99 NAISLLLLLPIALPGIVTGLALLTAFKTINLEPGFFTIVVGHATFCVVVVFNNVIARFRRTSWSLVEASMDLGANGWQTF 178
Cdd:PRK09500  93 KFVSGMLFVVMMSPDIVMAISLLVLFMLLGIQLGFWSLLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTIL 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402  179 RYVVLPNLSSALLAGGMLAFALSFDEIIVTTFTAGHE-RTLPL--WLLNQLGRPRDVpvtNVVALLVMLVTTLPILGAWW 255
Cdd:PRK09500 173 RKIILPLALPAVAAGWLLSFTLSLDDVVVSSFVTGPSyEILPLkiYSMVKVGVSPEV---NALATILLVLSLVLVILSQL 249


                 ....
gi 16129402  256 LTRE 259
Cdd:PRK09500 250 LARD 253
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 68-251 2.68e-11

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 61.14  E-value: 2.68e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402  68 SLKVAALATLIALVLGTLAAAALWRRDFFGKNAISLLLLLPIALPGIVTGLALLTAFKTINLEPG----FFTIVVGHATF 143
Cdd:cd06261   4 TLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGIlpglGLPALILALLL 83

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402 144 CVVVVFNNVIARFRRTSWSLVEASMDLGANGWQTFRYVVLPNLSSALLAGGMLAFALSFDEIIVTTFTAGHERTLPLWLL 223
Cdd:cd06261  84 IAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTGL 163

                       170       180
                ....*....|....*....|....*...
gi 16129402 224 NQLGRpRDVPVTNVVALLVMLVTTLPIL 251
Cdd:cd06261 164 LLIFA-ILFPGDLGVAAAVALILLLLSL 190
permease_CysW TIGR02140
sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two ...
 18-220 8.11e-07

sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysT (TIGR02139). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 162725  Cd Length: 261  Bit Score: 48.92  E-value: 8.11e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402    18 VVFLHFPILIIAAYAFNTEDAAFsfppqgltLRWFSvaaqRSDILDAVTLSLKVAALATLIALVLGTLAAAALWRRDFFG 97
Cdd:TIGR02140  14 FLLLLLPLALIFQEAFEKGFGVF--------FAAIS----DPDALSAIKLTLLVALIVVPLNTVFGVCAAWVLTRFQFPG 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402    98 KNAISLLLLLPIALPGIVTGLALLTAFKTINLEPGFFT------------IVVGHATFCVVVVFNNVIARFRRTSWSLVE 165
Cdd:TIGR02140  82 KRLLLTIIDLPFSVSPVVAGLIFVLLYGSQGWLGPWLEdldikiifslpgIVLATMFVTCPFVARELIPVMEEQGTEQEE 161

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 16129402   166 ASMDLGANGWQTFRYVVLPNLSSALLAGGMLAFALSFDEIIVTTFTAGHER----TLPL 220
Cdd:TIGR02140 162 AALTLGASWWQTFWRVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSGHIRgktnTLPL 220
 
Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 5-261 4.50e-67

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 208.81  E-value: 4.50e-67
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402   5 RAPFFLKLAAWGGVVFLHFPILIIAAYAFNTEDAaFSFPPQGLTLRWFSVAAQRSDILDAVTLSLKVAALATLIALVLGT 84
Cdd:COG1177   4 LGRLLLRLFLALVLLFLYLPILVLVLYSFNDSWF-LTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGT 82

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402  85 LAAAALWRRDFFGKNAISLLLLLPIALPGIVTGLALLTAFKTINLEPGFFTIVVGHATFCVVVVFNNVIARFRRTSWSLV 164
Cdd:COG1177  83 PAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSLE 162

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402 165 EASMDLGANGWQTFRYVVLPNLSSALLAGGMLAFALSFDEIIVTTFTAGHE-RTLPLWLLNQLgRPRDVPVTNVVALLVM 243
Cdd:COG1177 163 EAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGvTTLPVYIYSMI-RRGISPEINALSTLLI 241

                       250
                ....*....|....*...
gi 16129402 244 LVTTLPILGAWWLTREGD 261
Cdd:COG1177 242 LLSLLLLLLAERLRRRGE 259
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 19-259 6.20e-32

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 118.16  E-value: 6.20e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402   19 VFLHFPILIIAAYAFNteDAAFSFPPQGLTLRWFSVAAQRSDILDAVTLSLKVAALATLIALVLGTLAAAALWRRDFFGK 98
Cdd:PRK09500  15 AYLYIPIIILIVNSFN--SSRFGINWKGFTTKWYELLFNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGK 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402   99 NAISLLLLLPIALPGIVTGLALLTAFKTINLEPGFFTIVVGHATFCVVVVFNNVIARFRRTSWSLVEASMDLGANGWQTF 178
Cdd:PRK09500  93 KFVSGMLFVVMMSPDIVMAISLLVLFMLLGIQLGFWSLLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTIL 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402  179 RYVVLPNLSSALLAGGMLAFALSFDEIIVTTFTAGHE-RTLPL--WLLNQLGRPRDVpvtNVVALLVMLVTTLPILGAWW 255
Cdd:PRK09500 173 RKIILPLALPAVAAGWLLSFTLSLDDVVVSSFVTGPSyEILPLkiYSMVKVGVSPEV---NALATILLVLSLVLVILSQL 249


                 ....
gi 16129402  256 LTRE 259
Cdd:PRK09500 250 LARD 253
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 17-256 4.42e-27

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 105.70  E-value: 4.42e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402   17 GVVFLHFPILIIAAYAFNTEDAAFSFppQGLTLRWFSVAAQRSDILDAVTLSLKVAALATLIALVLGTLAAAALWR-RDF 95
Cdd:PRK10592  19 GFTFLYAPMLMLVIYSFNSSKLVTVW--AGWSTRWYGELFRDDAMMSAVGLSLTIAACAATAAAILGTIAAVVMVRfGRF 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402   96 FGKNAISLLLLLPIALPGIVTGLALLTAFKTIN------LEPGFFTIVVGHATFCVVVVFNNVIARFRRTSWSLVEASMD 169
Cdd:PRK10592  97 RGSNGFAFMITAPLVMPDVITGLSLLLLFVALAhaigwpADRGMLTIWLAHVTFCTAYVAVVISSRLRELDRSIEEAAMD 176

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402  170 LGANGWQTFRYVVLPNLSSALLAGGMLAFALSFDEIIVTTFTAG-HERTLPLWLLNQLGRPRDvPVTNVVALLVMLVTTL 248
Cdd:PRK10592 177 LGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIASFVSGpGATTLPMLVFSSVRMGVN-PEINALATLILGVVGI 255


                 ....*...
gi 16129402  249 PILGAWWL 256
Cdd:PRK10592 256 VGFIAWYL 263
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
5-258 3.68e-21

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 92.15  E-value: 3.68e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402   5 RAPFFLKLAAWGGVVFLhFPILIIAAYAFNTedaafsFPPQGLTLRWFSVAAQRSDILDAVTLSLKVAALATLIALVLGT 84
Cdd:COG1178 287 RWLALALCLLLVLLGLL-LPLLALLLWSLTK------ALDDNLTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLAL 359

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402  85 LAAAALWRRDFFGKNAISLLLLLPIALPGIVTGLALLTAF---KTINLEPGFFTIVVGHATFCVVVVFNNVIARFRRTSW 161
Cdd:COG1178 360 LLAYLVRRRRGRLARLLDRLAMLPYAVPGIVLGLGLLLLFnrpLPLLLYGTLAILVLAYVVRFLPFALRSLEAALAQIDP 439

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402 162 SLVEASMDLGANGWQTFRYVVLPNLSSALLAGGMLAFALSFDEIIVTTFTAGHE-RTLPLWLLNQLGRPRdVPVTNVVAL 240
Cdd:COG1178 440 SLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPGfETLAVLIYQLASSGR-YGEAAALAL 518

                       250
                ....*....|....*...
gi 16129402 241 LVMLVTTLPILGAWWLTR 258
Cdd:COG1178 519 LLVLVSLLPVLLLERLLG 536
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 18-261 1.03e-15

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 74.80  E-value: 1.03e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402  18 VVFLHFPILIIAAYAFNTEDAAFSFPPqGLTLRWFSVAAQRSDILDAVTLSLKVAALATLIALVLGTLAAAALWRRDFFG 97
Cdd:COG1176  23 LLFFVLPLLLLLVYSFTTRDPYGGVVP-GFTLENYARLFTDPLYLKVLLRTLWIALLTTLICLLLGYPIAYFLARAPPRW 101

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402  98 KNAISLLLLLPIALPGIVTGLALLTAFKT-----------------INLEPGFFTIVVGHATFCVVVVFNNVIARFRRTS 160
Cdd:COG1176 102 RNLLLLLVILPFWTSFLVRTYAWIVLLGRngllnslllalglidepLRLLYTEFAVVIGLVYVYLPFMVLPLYAALEKID 181

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402 161 WSLVEASMDLGANGWQTFRYVVLPNLSSALLAGGMLAFALSFDEIIVTTFTAG-HERTLPLWLLNQLGRPRDVPVTNVVA 239
Cdd:COG1176 182 PSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGgKVLMIGNLIYQQFLSALNWPLAAALA 261

                       250       260
                ....*....|....*....|..
gi 16129402 240 LLVMLVTTLPILGAWWLTREGD 261
Cdd:COG1176 262 VVLLLIVLLVLLLYLRLLRRRR 283
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 12-251 1.75e-14

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 71.28  E-value: 1.75e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402  12 LAAWGGVVFLHFPILIIAAYAFNTEDAAFSFP----PQGLTLRWFSVAAQRSDILDAVTLSLKVAALATLIALVLGTLAA 87
Cdd:COG0395  19 LLLILLALLFLFPLYWMVVTSFKPPAEIFSGPpsllPSEFTLENYRAAFTDGPFGRYLLNSLIVAVVSTVLSLLLSSLAA 98

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402  88 AALWRRDFFGKNAISLLLLLPIALPGIVTGLALLTAFKTINLEPGFFTIVVGHATFCVVVVFNNVIARFRRTSWSLVEAS 167
Cdd:COG0395  99 YALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAFGLPFGIFLLRQFFRSIPRELEEAA 178

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402 168 MDLGANGWQTFRYVVLPNLSSALLAGGMLAFALSFDE-IIVTTFTAGHE-RTLPLWLLNQLGrPRDVPVTNVVAllVMLV 245
Cdd:COG0395 179 RIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDfLWPLILLTSPDlRTLPVGLASFQG-QYGTDWGLLMA--AAVI 255


                ....*.
gi 16129402 246 TTLPIL 251
Cdd:COG0395 256 ATLPVL 261
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
5-258 2.02e-14

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 72.50  E-value: 2.02e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402   5 RAPFFLKLAAWGGVVFLHFPILIIAAYAFNTEDAAFSFppqgltlrwfsvAAQRSDILDAVTLSLKVAALATLIALVLGT 84
Cdd:COG1178   8 RPRLLLLLLALLLALLVLLPLLALLLRAFTDGLANFWA------------LLSDPYLWRALGNTLLLALLVTLLSLLLGV 75

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402  85 LAAAALWRRDFFGKNAISLLLLLPIALPGIVTGLALLTAF-----------KTINLEP----GFFTIVVGHATFCVVVVF 149
Cdd:COG1178  76 PLAWLLARTDFPGRRLLRWLLLLPLALPPYVVALAWIALFgpngllntllrALFGLEPpdiyGLGGIILVLVLFNYPYVY 155

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402 150 NNVIARFRRTSWSLVEASMDLGANGWQTFRYVVLPNLSSALLAGGMLAFALSFDEIIVTTFTAGHERTLPLWLLNQLGRP 229
Cdd:COG1178 156 LLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLGGGYTTLTTAIYQAWLGD 235

                       250       260
                ....*....|....*....|....*....
gi 16129402 230 RDVPVTNVVALLVMLVTTLPILGAWWLTR 258
Cdd:COG1178 236 FDLGAAAALALVLLLLVLLLLLLERRLRR 264
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 1-213 2.46e-11

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 62.07  E-value: 2.46e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402   1 MHSERAPFFLKLAAWGGVVFLHFPILIIAAYAFNTEDAAFSFppqgltlrwFSVAAQRSDILDAVTLSLKVAALATLIAL 80
Cdd:COG0555   1 MSRRVLPGFGLTLGLTLLYLSLIVLLPLAALVLKAAGLGWAE---------FWAVLTSPRVLAALKLSLGTALIAALINL 71

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402  81 VLGTLAAAALWRRDFFGKNAISLLLLLPIALPGIVTGLALLTAFKTINLEPGFFT------------IVVGHATFCVVVV 148
Cdd:COG0555  72 VFGLPLAWVLVRYRFPGKRLVDALVDLPFALPTAVAGIALLLLFGPNGWLGQLLAplgikvaftplgIVLAQTFVSLPFV 151

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16129402 149 FNNVIARFRRTSWSLVEASMDLGANGWQTFRYVVLPNLSSALLAGGMLAFALSFDEIIVTTFTAG 213
Cdd:COG0555 152 VRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAVIFIAG 216
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 68-251 2.68e-11

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 61.14  E-value: 2.68e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402  68 SLKVAALATLIALVLGTLAAAALWRRDFFGKNAISLLLLLPIALPGIVTGLALLTAFKTINLEPG----FFTIVVGHATF 143
Cdd:cd06261   4 TLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGIlpglGLPALILALLL 83

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402 144 CVVVVFNNVIARFRRTSWSLVEASMDLGANGWQTFRYVVLPNLSSALLAGGMLAFALSFDEIIVTTFTAGHERTLPLWLL 223
Cdd:cd06261  84 IAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTGL 163

                       170       180
                ....*....|....*....|....*...
gi 16129402 224 NQLGRpRDVPVTNVVALLVMLVTTLPIL 251
Cdd:cd06261 164 LLIFA-ILFPGDLGVAAAVALILLLLSL 190
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 59-220 5.57e-11

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 60.45  E-value: 5.57e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402  59 SDILDAVTLSLKVAALATLIALVLGTLAAAALWRRDFFGKNAISLLLLLPIALPGIVTGLALLTAF-----------KTI 127
Cdd:COG4149   3 PEDWSALWLSLKVALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTLPLVLPPTVLGFYLLLLFgrngplgqlleELF 82

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402 128 NLEPGF-FT-IVVGHATFCVVVVFNNVIARFRRTSWSLVEASMDLGANGWQTFRYVVLPNLSSALLAGGMLAFALSFDEI 205
Cdd:COG4149  83 GISLVFtWTgAVLASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFARALGEF 162

                       170
                ....*....|....*....
gi 16129402 206 IVT-TF---TAGHERTLPL 220
Cdd:COG4149 163 GATlMFagnIPGKTQTLPL 181
modB PRK09421
molybdate ABC transporter permease subunit;
62-220 5.97e-08

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 51.85  E-value: 5.97e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402   62 LDAVTLSLKVAALATLIALVLGTLAAAALWRRDFFGKNAISLLLLLPIALPGIVTGLALLTAFKTINLEPGF----FTIV 137
Cdd:PRK09421   8 WQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWlyewFGIS 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402  138 VGH----ATFCVVVVFNNVIARFRRTSWSLV-----EASMDLGANGWQTFRYVVLPNLSSALLAGGMLAFALSFDEIIVT 208
Cdd:PRK09421  88 FAFswrgAALAAAVMAFPLMVRAIRLSLEAVdrkleQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGEFGAT 167

                        170
                 ....*....|....*.
gi 16129402  209 -TFTA---GHERTLPL 220
Cdd:PRK09421 168 iTFVSnipGETQTIPS 183
cysT CHL00187
sulfate transport protein; Provisional
 61-204 2.26e-07

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 50.40  E-value: 2.26e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402   61 ILDAVTLSLKVAALATLIALVLGTLAAAALWRRDFFGKNAISLLLLLPIALPGIVTGLALLTA----------FKTINLE 130
Cdd:CHL00187  53 ALSAYSLTLSMALIAALINGFFGLLIAWVLVRYNFPGKRLLDAAVDLPFALPTSVAGLTLATVygdngwighlLSHLGIQ 132

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16129402  131 PGFFTIVVGHATFCVVV--VFNNVIARFRRTSWSLVEASMDLGANGWQTFRYVVLPNLSSALLAGGMLAFALSFDE 204
Cdd:CHL00187 133 IVFTKLGVLLAMIFVSFpfVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGE 208
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
165-213 2.39e-07

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 50.52  E-value: 2.39e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 16129402  165 EASMDLGANGWQTFRYVVLPNLSSALLAGGMLAFALSFDEIIVTTFTAG 213
Cdd:PRK10971 172 EAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAVIFIAG 220
PRK10683 PRK10683
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 158-251 4.43e-07

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182646  Cd Length: 317  Bit Score: 50.09  E-value: 4.43e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402  158 RTSWSLVEASMDLGANGWQTFRYVVLPNLSSALLAGGMLAFALSFDEIIVTTFTAGHERTL---PLWllNQLGRPRDVPV 234
Cdd:PRK10683 209 RIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSMLVFIPAVGEFVIPELLGGPDSIMigrVLW--QEFFNNRDWPV 286

                         90
                 ....*....|....*..
gi 16129402  235 TNVVALLVMLVTTLPIL 251
Cdd:PRK10683 287 ASAVAIIMLLLLIVPIM 303
permease_CysW TIGR02140
sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two ...
 18-220 8.11e-07

sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysT (TIGR02139). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 162725  Cd Length: 261  Bit Score: 48.92  E-value: 8.11e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402    18 VVFLHFPILIIAAYAFNTEDAAFsfppqgltLRWFSvaaqRSDILDAVTLSLKVAALATLIALVLGTLAAAALWRRDFFG 97
Cdd:TIGR02140  14 FLLLLLPLALIFQEAFEKGFGVF--------FAAIS----DPDALSAIKLTLLVALIVVPLNTVFGVCAAWVLTRFQFPG 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402    98 KNAISLLLLLPIALPGIVTGLALLTAFKTINLEPGFFT------------IVVGHATFCVVVVFNNVIARFRRTSWSLVE 165
Cdd:TIGR02140  82 KRLLLTIIDLPFSVSPVVAGLIFVLLYGSQGWLGPWLEdldikiifslpgIVLATMFVTCPFVARELIPVMEEQGTEQEE 161

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 16129402   166 ASMDLGANGWQTFRYVVLPNLSSALLAGGMLAFALSFDEIIVTTFTAGHER----TLPL 220
Cdd:TIGR02140 162 AALTLGASWWQTFWRVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSGHIRgktnTLPL 220
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 5-202 1.51e-04

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 42.75  E-value: 1.51e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402     5 RAPFFLKLAAWggVVFLHFPILIIAAYAFNTEDAAFsfppqgLTLRWFSVAAQRSDILDAVTLSLKVAALATLIALVLGT 84
Cdd:TIGR03262   4 RLLLAGMILAL--LLFLLLPLLALLTKSVYDSDGDF------IGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAF 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402    85 LAAAALWRRDFFGKNAISLLLLLPIALPGIVTGLALLTAFKTINLEPGFFT---------IVVGHATFCVVVVFNNVIAR 155
Cdd:TIGR03262  76 AFAYALTRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLLKGLLGgfsiygfwgIVIGEVFYTFPHALMILVTA 155

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 16129402   156 FRRTSWSLVEASMDLGANGWQTFRYVVLPNLSSALLAGGMLAFALSF 202
Cdd:TIGR03262 156 LSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVI 202
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 153-248 1.89e-04

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 41.91  E-value: 1.89e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402  153 IARFRRTSWSLVEASMDLGANGWQTFRYVVLPNLSSALLAGGMLAFALSFDEIIVTTFT-AGHERTLPLWLLNQLGRPRD 231
Cdd:PRK15050 181 LAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEFGIVLFTgAKDVVTLPVLIYSKAIVDFD 260

                         90
                 ....*....|....*..
gi 16129402  232 VPVTNVVAlLVMLVTTL 248
Cdd:PRK15050 261 YPTACAIA-VVNLALSL 276
PstA COG0581
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 156-258 3.63e-04

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440346 [Multi-domain]  Cd Length: 259  Bit Score: 40.79  E-value: 3.63e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402 156 FRRTSWSLVEASMDLGANGWQTFRYVVLPNLSSALLAGGMLAFALSFDE---IIVTTFTA--------GHERTLPLWLLN 224
Cdd:COG0581 137 LRLVPNSLREASYALGATKWQTIRKVVLPAALPGILTGVILAIARAAGEtapLLFTAGVSpflplslfDPFATLPVHIYN 216

                        90       100       110
                ....*....|....*....|....*....|....*.
gi 16129402 225 QLGRPRDVPVTNV--VALLVMLVTTLPILGAWWLTR 258
Cdd:COG0581 217 LASSPYPAAQELAwaAALVLLLLVLLLNLLARLLRR 252
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
166-261 6.72e-04

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 40.12  E-value: 6.72e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402 166 ASMDlGANGWQTFRYVVLPNLSSALLAGGMLAFALS---FDEIIVTT--FTAGHERTLPLWLLNQLGRPRDVPVTNVVAL 240
Cdd:COG1175 199 ARID-GASPWQRFRRITLPLLRPTILFVLVLSTIGAlqvFDLVYVLTggGPGNSTTTLVLYIYQTAFQQFDFGYASAIAV 277

                        90       100
                ....*....|....*....|.
gi 16129402 241 LVMLVTTLPILGAWWLTREGD 261
Cdd:COG1175 278 VLFLIILVLTLLQLRLLRRRE 298
PstC COG0573
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 156-223 6.83e-04

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440338 [Multi-domain]  Cd Length: 303  Bit Score: 40.46  E-value: 6.83e-04
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16129402 156 FRRTSWSLVEASMDLGANGWQTFRYVVLPNLSSALLAGGMLAFALSFDEIIVTTFTAGHERTLPLWLL 223
Cdd:COG0573 179 LRAVPRSLREAALALGATRWETIRKVVLPAARSGIIAAVILGLGRALGETMAVLMVAGNAPQIPFSLF 246
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
165-220 2.35e-03

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 38.58  E-value: 2.35e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129402  165 EASMDLGANGWQTFRYVVLPNLSSALLAGGMLAFALSFDEI----IVTTFTAGHERTLPL 220
Cdd:PRK11602 178 EAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEFgavsVVSGSIRGETLSLPL 237
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
 156-214 4.55e-03

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 37.63  E-value: 4.55e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 16129402   156 FRRTSWSLVEASMDLGANGWQTFRYVVLPNLSSALLAGGMLAFALSFDEIIVTTFTAGH 214
Cdd:TIGR02138 174 LRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGLGRALGETMAVTMVIGN 232
3a0107s02c TIGR00974
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of ...
 157-225 5.39e-03

phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273373  Cd Length: 271  Bit Score: 37.60  E-value: 5.39e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16129402   157 RRTSWSLVEASMDLGANGWQTFRYVVLPNLSSALLAGGMLAFALSFDEIIVTTFTAGHERTLPLWLLNQ 225
Cdd:TIGR00974 152 KAVPKDLREASLALGATKWQTIFKVVLPAALPGILTGIILSIARAAGETAPLLFTAGGSAFTPPNLFDP 220
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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