|
Name |
Accession |
Description |
Interval |
E-value |
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
1-307 |
9.09e-144 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 407.97 E-value: 9.09e-144
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 1 MSDTLLTLRDVHINFPARKNWLGKTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYI------ 74
Cdd:COG4608 3 MAEPLLEVRDLKKHFPVRGGLFGRTVGVVKAVDGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILfdgqdi 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 75 --RSGSQ-----RIMQMVFQDPLSSLNPRLPVWRIITEPLWIAKRSSEQQRRALAEELAVQVGIRPEYLDRLPHAFSGGQ 147
Cdd:COG4608 83 tgLSGRElrplrRRMQMVFQDPYASLNPRMTVGDIIAEPLRIHGLASKAERRERVAELLELVGLRPEHADRYPHEFSGGQ 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 148 RQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDA 227
Cdd:COG4608 163 RQRIGIARALALNPKLIVCDEPVSALDVSIQAQVLNLLEDLQDELGLTYLFISHDLSVVRHISDRVAVMYLGKIVEIAPR 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 228 QQVLTAPAHPYTRLLLDSLPAIDKPLEEEWALRKTDLPGNRTLPQGCFFYERCPLATHGC-EVRQSLAIREDGRELRCWR 306
Cdd:COG4608 243 DELYARPLHPYTQALLSAVPVPDPERRRERIVLEGDVPSPLNPPSGCRFHTRCPYAQDRCaTEEPPLREVGPGHQVACHL 322
|
.
gi 16129442 307 A 307
Cdd:COG4608 323 A 323
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
5-307 |
3.15e-140 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 398.66 E-value: 3.15e-140
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 5 LLTLRDVHINFPARKNWlgkttehVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPS---------HGQYIR 75
Cdd:COG0444 1 LLEVRNLKVYFPTRRGV-------VKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPPgitsgeilfDGEDLL 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 76 SGSQRIM--------QMVFQDPLSSLNPRLPVWRIITEPLWIAKRSSEQQRRALAEELAVQVGIRP--EYLDRLPHAFSG 145
Cdd:COG0444 74 KLSEKELrkirgreiQMIFQDPMTSLNPVMTVGDQIAEPLRIHGGLSKAEARERAIELLERVGLPDpeRRLDRYPHELSG 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 146 GQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELG 225
Cdd:COG0444 154 GMRQRVMIARALALEPKLLIADEPTTALDVTIQAQILNLLKDLQRELGLAILFITHDLGVVAEIADRVAVMYAGRIVEEG 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 226 DAQQVLTAPAHPYTRLLLDSLPAIDKPLEEEWALrKTDLPGNRTLPQGCFFYERCPLATHGC-EVRQSLAIREDGRELRC 304
Cdd:COG0444 234 PVEELFENPRHPYTRALLSSIPRLDPDGRRLIPI-PGEPPSLLNPPSGCRFHPRCPYAMDRCrEEEPPLREVGPGHRVAC 312
|
...
gi 16129442 305 WRA 307
Cdd:COG0444 313 HLY 315
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-250 |
7.27e-123 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 361.53 E-value: 7.27e-123
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 1 MSDTLLTLRDVHINFPARKnwlgktTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYI------ 74
Cdd:COG1123 256 AAEPLLEVRNLSKRYPVRG------KGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILfdgkdl 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 75 --RSGSQ-----RIMQMVFQDPLSSLNPRLPVWRIITEPLWIAKRSSEQQRRALAEELAVQVGIRPEYLDRLPHAFSGGQ 147
Cdd:COG1123 330 tkLSRRSlrelrRRVQMVFQDPYSSLNPRMTVGDIIAEPLRLHGLLSRAERRERVAELLERVGLPPDLADRYPHELSGGQ 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 148 RQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDA 227
Cdd:COG1123 410 RQRVAIARALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEDGPT 489
|
250 260
....*....|....*....|...
gi 16129442 228 QQVLTAPAHPYTRLLLDSLPAID 250
Cdd:COG1123 490 EEVFANPQHPYTRALLAAVPSLD 512
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
3-250 |
1.18e-122 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 361.69 E-value: 1.18e-122
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 3 DTLLTLRDVHINFPARKNWLGKTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGmLQPSHGQyIRSGSQRI- 81
Cdd:COG4172 273 PPLLEARDLKVWFPIKRGLFRRTVGHVKAVDGVSLTLRRGETLGLVGESGSGKSTLGLALLR-LIPSEGE-IRFDGQDLd 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 82 -------------MQMVFQDPLSSLNPRLPVWRIITEPLWI-AKRSSEQQRRALAEELAVQVGIRPEYLDRLPHAFSGGQ 147
Cdd:COG4172 351 glsrralrplrrrMQVVFQDPFGSLSPRMTVGQIIAEGLRVhGPGLSAAERRARVAEALEEVGLDPAARHRYPHEFSGGQ 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 148 RQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDA 227
Cdd:COG4172 431 RQRIAIARALILEPKLLVLDEPTSALDVSVQAQILDLLRDLQREHGLAYLFISHDLAVVRALAHRVMVMKDGKVVEQGPT 510
|
250 260
....*....|....*....|...
gi 16129442 228 QQVLTAPAHPYTRLLLDSLPAID 250
Cdd:COG4172 511 EQVFDAPQHPYTRALLAAAPLLE 533
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
1-307 |
3.89e-113 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 330.00 E-value: 3.89e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 1 MSDTLLTLRDVHINFPARKNwLGKTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGS-- 78
Cdd:PRK11308 1 SQQPLLQAIDLKKHYPVKRG-LFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQdl 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 79 -----------QRIMQMVFQDPLSSLNPRLPVWRIITEPLWIAKRSSEQQRRALAEELAVQVGIRPEYLDRLPHAFSGGQ 147
Cdd:PRK11308 80 lkadpeaqkllRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQ 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 148 RQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDA 227
Cdd:PRK11308 160 RQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTK 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 228 QQVLTAPAHPYTRLLLDSLPAIDKPLEEEWALRKTDLPGNRTLPQGCFFYERCPLATHGCEVRQSLAIREDGRELRCWRA 307
Cdd:PRK11308 240 EQIFNNPRHPYTQALLSATPRLNPDDRRERIKLTGELPSPLNPPPGCAFNARCPRAFGRCRQEQPQLRDYDGRLVACFAV 319
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
5-225 |
1.85e-107 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 311.75 E-value: 1.85e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 5 LLTLRDVHINFPARKNWlgkttehVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSG------S 78
Cdd:cd03257 1 LLEVKNLSVSFPTGGGS-------VKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGkdllklS 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 79 QRI-------MQMVFQDPLSSLNPRLPVWRIITEPLWIAKR-SSEQQRRALAEELAVQVGIRPEYLDRLPHAFSGGQRQR 150
Cdd:cd03257 74 RRLrkirrkeIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKlSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQR 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16129442 151 IAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELG 225
Cdd:cd03257 154 VAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
5-252 |
2.07e-104 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 304.80 E-value: 2.07e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 5 LLTLRDVHINFPARKnwlgkttEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQ---------YIR 75
Cdd:COG1124 1 MLEVRNLSVSYGQGG-------RRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEvtfdgrpvtRRR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 76 SGSQ-RIMQMVFQDPLSSLNPRLPVWRIITEPLWIAKRSSEQQRralAEELAVQVGIRPEYLDRLPHAFSGGQRQRIAIA 154
Cdd:COG1124 74 RKAFrRRVQMVFQDPYASLHPRHTVDRILAEPLRIHGLPDREER---IAELLEQVGLPPSFLDRYPHQLSGGQRQRVAIA 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 155 RALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTAP 234
Cdd:COG1124 151 RALILEPELLLLDEPTSALDVSVQAEILNLLKDLREERGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVADLLAGP 230
|
250
....*....|....*...
gi 16129442 235 AHPYTRLLLDSLPAIDKP 252
Cdd:COG1124 231 KHPYTRELLAASLAFERA 248
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
5-287 |
1.41e-96 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 288.14 E-value: 1.41e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 5 LLTLRD--VHINFPARKNWLGKTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHG------QYIRS 76
Cdd:PRK15079 8 LLEVADlkVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGevawlgKDLLG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 77 GSQRIM-------QMVFQDPLSSLNPRLPVWRIITEPLWIAK-RSSEQQRRALAEELAVQVGIRPEYLDRLPHAFSGGQR 148
Cdd:PRK15079 88 MKDDEWravrsdiQMIFQDPLASLNPRMTIGEIIAEPLRTYHpKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQC 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 149 QRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQ 228
Cdd:PRK15079 168 QRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYD 247
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16129442 229 QVLTAPAHPYTRLLLDSLPAIDKPLE--EEWALRKTDLPGNRTLPQGCFFYERCPLATHGC 287
Cdd:PRK15079 248 EVYHNPLHPYTKALMSAVPIPDPDLErnKTIQLLEGELPSPINPPSGCVFRTRCPIAGPEC 308
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
1-252 |
2.07e-86 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 268.48 E-value: 2.07e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 1 MSDTLLTLRDVHINFparknwlGKTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPS----------H 70
Cdd:COG4172 2 MSMPLLSVEDLSVAF-------GQGGGTVEAVKGVSFDIAAGETLALVGESGSGKSVTALSILRLLPDPaahpsgsilfD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 71 GQYIRSGSQRIMQ--------MVFQDPLSSLNPRLPVWRIITEPLWIAKRSSEQQRRALAEELAVQVGIR-PEY-LDRLP 140
Cdd:COG4172 75 GQDLLGLSERELRrirgnriaMIFQEPMTSLNPLHTIGKQIAEVLRLHRGLSGAAARARALELLERVGIPdPERrLDAYP 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 141 HAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQ 220
Cdd:COG4172 155 HQLSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKDLQRELGMALLLITHDLGVVRRFADRVAVMRQGE 234
|
250 260 270
....*....|....*....|....*....|..
gi 16129442 221 IVELGDAQQVLTAPAHPYTRLLLDSLPAIDKP 252
Cdd:COG4172 235 IVEQGPTAELFAAPQHPYTRKLLAAEPRGDPR 266
|
|
| SapF |
COG4167 |
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms]; |
4-245 |
2.43e-86 |
|
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms];
Pssm-ID: 443328 [Multi-domain] Cd Length: 265 Bit Score: 259.77 E-value: 2.43e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 4 TLLTLRDVHINFPARKNWLGKttEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSG------ 77
Cdd:COG4167 3 ALLEVRNLSKTFKYRTGLFRR--QQFEAVKPVSFTLEAGQTLAIIGENGSGKSTLAKMLAGIIEPTSGEILINGhkleyg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 78 -----SQRImQMVFQDPLSSLNPRLPVWRIITEPLWIAKRSSEQQRRALAEELAVQVGIRPEYLDRLPHAFSGGQRQRIA 152
Cdd:COG4167 81 dykyrCKHI-RMIFQDPNTSLNPRLNIGQILEEPLRLNTDLTAEEREERIFATLRLVGLLPEHANFYPHMLSSGQKQRVA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 153 IARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLT 232
Cdd:COG4167 160 LARALILQPKIIIADEALAALDMSVRSQIINLMLELQEKLGISYIYVSQHLGIVKHISDKVLVMHQGEVVEYGKTAEVFA 239
|
250
....*....|...
gi 16129442 233 APAHPYTRLLLDS 245
Cdd:COG4167 240 NPQHEVTKRLIES 252
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
1-307 |
3.31e-74 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 231.15 E-value: 3.31e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 1 MSDTLLTLRDVHINFparknwlgKTTE-HVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQpSHGqyIRSGSQ 79
Cdd:PRK09473 8 QADALLDVKDLRVTF--------STPDgDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA-ANG--RIGGSA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 80 RI--------------------MQMVFQDPLSSLNPRLPVWRIITEPLWIAKRSSEQQrrALAEEL----AVQVgirPEY 135
Cdd:PRK09473 77 TFngreilnlpekelnklraeqISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAE--AFEESVrmldAVKM---PEA 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 136 LDRL---PHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDR 212
Cdd:PRK09473 152 RKRMkmyPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDK 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 213 VAVMYLGQIVELGDAQQVLTAPAHPYTRLLLDSLPAIDkplEEEWALrkTDLPGNR----TLPQGCFFYERCPLATHGCE 288
Cdd:PRK09473 232 VLVMYAGRTMEYGNARDVFYQPSHPYSIGLLNAVPRLD---AEGESL--LTIPGNPpnllRLPKGCPFQPRCPHAMEICS 306
|
330
....*....|....*....
gi 16129442 289 VRQSLAIREDGRELRCWRA 307
Cdd:PRK09473 307 SAPPLEEFGPGRLRACFKP 325
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
4-243 |
5.27e-73 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 233.83 E-value: 5.27e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 4 TLLTLRDVHINFPARKNWLGKTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLqPSHGQYIRSGS----- 78
Cdd:PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQplhnl 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 79 --------QRIMQMVFQDPLSSLNPRLPVWRIITEPLWIAKRS-SEQQRRALAEELAVQVGIRPEYLDRLPHAFSGGQRQ 149
Cdd:PRK15134 353 nrrqllpvRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTlSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQ 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 150 RIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQ 229
Cdd:PRK15134 433 RIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCER 512
|
250
....*....|....
gi 16129442 230 VLTAPAHPYTRLLL 243
Cdd:PRK15134 513 VFAAPQQEYTRQLL 526
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
3-265 |
2.28e-70 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 226.71 E-value: 2.28e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 3 DTLLTLRDVHINFPARKnwlgkttehVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPS---------HGQY 73
Cdd:COG1123 2 TPLLEVRDLSVRYPGGD---------VPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGgrisgevllDGRD 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 74 IRSGSQRIMQ----MVFQDPLSSLNPrLPVWRIITEPLWIAKRSSEQqRRALAEELAVQVGIrPEYLDRLPHAFSGGQRQ 149
Cdd:COG1123 73 LLELSEALRGrrigMVFQDPMTQLNP-VTVGDQIAEALENLGLSRAE-ARARVLELLEAVGL-ERRLDRYPHQLSGGQRQ 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 150 RIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQ 229
Cdd:COG1123 150 RVAIAMALALDPDLLIADEPTTALDVTTQAEILDLLRELQRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEE 229
|
250 260 270
....*....|....*....|....*....|....*.
gi 16129442 230 VLTAPAhpytrlLLDSLPAIDKPLEEEWALRKTDLP 265
Cdd:COG1123 230 ILAAPQ------ALAAVPRLGAARGRAAPAAAAAEP 259
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
2-267 |
2.44e-68 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 223.96 E-value: 2.44e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 2 SDTLLTLRDVHINFPARKNWLGKTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGsQRI 81
Cdd:PRK10261 310 GEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNG-QRI 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 82 --------------MQMVFQDPLSSLNPRLPVWRIITEPLWIAKRSSEQQRRALAEELAVQVGIRPEYLDRLPHAFSGGQ 147
Cdd:PRK10261 389 dtlspgklqalrrdIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQ 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 148 RQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDA 227
Cdd:PRK10261 469 RQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPR 548
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 16129442 228 QQVLTAPAHPYTRLLLDSLPAIDKPLEE-EWALRKTDLPGN 267
Cdd:PRK10261 549 RAVFENPQHPYTRKLMAAVPVADPSRQRpQRVLLSDDLPSN 589
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
4-248 |
5.79e-63 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 200.03 E-value: 5.79e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 4 TLLTLRDVHINFpaRKNWLGKTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGS----- 78
Cdd:TIGR02769 1 SLLEVRDVTHTY--RTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQdlyql 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 79 --------QRIMQMVFQDPLSSLNPRLPVWRIITEPLWIAKRSSEQQRRALAEELAVQVGIRPEYLDRLPHAFSGGQRQR 150
Cdd:TIGR02769 79 drkqrrafRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQR 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 151 IAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQV 230
Cdd:TIGR02769 159 INIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQL 238
|
250
....*....|....*....
gi 16129442 231 LTApAHPYTRLLLDS-LPA 248
Cdd:TIGR02769 239 LSF-KHPAGRNLQSAvLPE 256
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
3-245 |
7.16e-63 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 200.02 E-value: 7.16e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 3 DTLLTLRDVHINFPARKNWLGKttEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSG----- 77
Cdd:PRK15112 2 ETLLEVRNLSKTFRYRTGWFRR--QTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDhplhf 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 78 ------SQRImQMVFQDPLSSLNPRLPVWRIITEPLWIAKRSSEQQRRALAEELAVQVGIRPEYLDRLPHAFSGGQRQRI 151
Cdd:PRK15112 80 gdysyrSQRI-RMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 152 AIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVL 231
Cdd:PRK15112 159 GLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVL 238
|
250
....*....|....
gi 16129442 232 TAPAHPYTRLLLDS 245
Cdd:PRK15112 239 ASPLHELTKRLIAG 252
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
32-248 |
5.78e-62 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 197.60 E-value: 5.78e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 32 INGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGS-------------QRIMQMVFQDPLSSLNPRLP 98
Cdd:PRK10419 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEplaklnraqrkafRRDIQMVFQDSISAVNPRKT 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 99 VWRIITEPLWIAKRSSEQQRRALAEELAVQVGIRPEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQ 178
Cdd:PRK10419 108 VREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQ 187
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16129442 179 AQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVE---LGDAQQVltapAHPYTRLLLDS-LPA 248
Cdd:PRK10419 188 AGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVEtqpVGDKLTF----SSPAGRVLQNAvLPA 257
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
31-304 |
1.45e-60 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 195.73 E-value: 1.45e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 31 AINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQ-PS---------HGQYIRSGSQRIMQ--------MVFQDPLSS 92
Cdd:PRK11022 22 AVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDyPGrvmaeklefNGQDLQRISEKERRnlvgaevaMIFQDPMTS 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 93 LNPRLPVWRIITEPLWIAKRSSEQQRRALAEELAVQVGI-RPEY-LDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPT 170
Cdd:PRK11022 102 LNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIpDPASrLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPT 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 171 SALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTAPAHPYTRLLLDSLPaid 250
Cdd:PRK11022 182 TALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPRHPYTQALLRALP--- 258
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16129442 251 kpleeEWALRKTDL-------PGNRTLPQGCFFYERCPLATHGCEVRQSLAIREDGRELRC 304
Cdd:PRK11022 259 -----EFAQDKARLaslpgvvPGKYDRPNGCLLNPRCPYATDRCRAEEPALNMLAGRQSKC 314
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
29-304 |
4.62e-59 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 192.04 E-value: 4.62e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 29 VHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPS----------HGQYI--RSGSQR--IM----QMVFQDPL 90
Cdd:COG4170 20 VKAVDRVSLTLNEGEIRGLVGESGSGKSLIAKAICGITKDNwhvtadrfrwNGIDLlkLSPRERrkIIgreiAMIFQEPS 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 91 SSLNPRLPVWRIITE--PLWIAKRS---SEQQRRALAEELAVQVGIR--PEYLDRLPHAFSGGQRQRIAIARALSSQPDV 163
Cdd:COG4170 100 SCLDPSAKIGDQLIEaiPSWTFKGKwwqRFKWRKKRAIELLHRVGIKdhKDIMNSYPHELTEGECQKVMIAMAIANQPRL 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 164 IVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTAPAHPYTRLLL 243
Cdd:COG4170 180 LIADEPTNAMESTTQAQIFRLLARLNQLQGTSILLISHDLESISQWADTITVLYCGQTVESGPTEQILKSPHHPYTKALL 259
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16129442 244 DSLPAIDKPLEEEWALrkTDLPGN----RTLPQGCFFYERCPLATHGCeVRQSLAIREDGRELRC 304
Cdd:COG4170 260 RSMPDFRQPLPHKSRL--NTLPGSipplQHLPIGCRLGPRCPYAQKKC-VETPRLRKIKGHEFAC 321
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
6-266 |
1.89e-56 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 185.67 E-value: 1.89e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 6 LTLRDVHINFPARKNwlgktteHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQRIMQ-- 83
Cdd:COG1135 2 IELENLSKTFPTKGG-------PVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGS-VLVDGVDLTAls 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 84 ------------MVFQDP--LSSLNprlpVWRIITEPLWIAKRSSEQqRRALAEELAVQVGIRpEYLDRLPHAFSGGQRQ 149
Cdd:COG1135 74 erelraarrkigMIFQHFnlLSSRT----VAENVALPLEIAGVPKAE-IRKRVAELLELVGLS-DKADAYPSQLSGGQKQ 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 150 RIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQ 229
Cdd:COG1135 148 RVGIARALANNPKVLLCDEATSALDPETTRSILDLLKDINRELGLTIVLITHEMDVVRRICDRVAVLENGRIVEQGPVLD 227
|
250 260 270
....*....|....*....|....*....|....*..
gi 16129442 230 VLTAPAHPYTRLLLDSLPAIDKPLEEEWALRKTDLPG 266
Cdd:COG1135 228 VFANPQSELTRRFLPTVLNDELPEELLARLREAAGGG 264
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
1-240 |
1.05e-54 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 177.86 E-value: 1.05e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 1 MSDTLLTLRDVHINFPARknwlgktteHVHaiNGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIR----- 75
Cdd:COG1127 1 MSEPMIEVRNLTKSFGDR---------VVL--DGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGE-ILvdgqd 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 76 ----SGSQRI-----MQMVFQDP--LSSLNprlpVWRIITEPLWIAKRSSEQQRRALAEELAVQVGIrPEYLDRLPHAFS 144
Cdd:COG1127 69 itglSEKELYelrrrIGMLFQGGalFDSLT----VFENVAFPLREHTDLSEAEIRELVLEKLELVGL-PGAADKMPSELS 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 145 GGQRQRIAIARALSSQPDVIVLDEPTSALD-ISVqAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVE 223
Cdd:COG1127 144 GGMRKRVALARALALDPEILLYDEPTAGLDpITS-AVIDELIRELRDELGLTSVVVTHDLDSAFAIADRVAVLADGKIIA 222
|
250
....*....|....*..
gi 16129442 224 LGDAQQVLTAPaHPYTR 240
Cdd:COG1127 223 EGTPEELLASD-DPWVR 238
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
1-256 |
3.76e-53 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 181.83 E-value: 3.76e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 1 MSDTLLTLRDVHINFpaRKnwlGKTTEHVhaINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLqPS----------- 69
Cdd:PRK15134 1 MTQPLLAIENLSVAF--RQ---QQTVRTV--VNDVSLQIEAGETLALVGESGSGKSVTALSILRLL-PSppvvypsgdir 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 70 -HGQYIRSGSQRI--------MQMVFQDPLSSLNPRLPVWRIITEPLWIAKRSSEQQRRALAEELAVQVGIR--PEYLDR 138
Cdd:PRK15134 73 fHGESLLHASEQTlrgvrgnkIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRqaAKRLTD 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 139 LPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYL 218
Cdd:PRK15134 153 YPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQN 232
|
250 260 270
....*....|....*....|....*....|....*....
gi 16129442 219 GQIVELGDAQQVLTAPAHPYTRLLLDSLPAIDK-PLEEE 256
Cdd:PRK15134 233 GRCVEQNRAATLFSAPTHPYTQKLLNSEPSGDPvPLPEP 271
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
5-234 |
5.05e-53 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 173.54 E-value: 5.05e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 5 LLTLRDVHINFPARKNwlgktteHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGS------ 78
Cdd:cd03258 1 MIELKNVSKVFGDTGG-------KVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTdltlls 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 79 -------QRIMQMVFQ--DPLSSLNprlpVWRIITEPLWIAKrSSEQQRRALAEELAVQVGIRpEYLDRLPHAFSGGQRQ 149
Cdd:cd03258 74 gkelrkaRRRIGMIFQhfNLLSSRT----VFENVALPLEIAG-VPKAEIEERVLELLELVGLE-DKADAYPAQLSGGQKQ 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 150 RIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQ 229
Cdd:cd03258 148 RVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEE 227
|
....*
gi 16129442 230 VLTAP 234
Cdd:cd03258 228 VFANP 232
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
3-223 |
7.07e-53 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 172.92 E-value: 7.07e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 3 DTLLTLRDVHINFPARKNwlgktteHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGsQRIM 82
Cdd:COG1136 2 SPLLELRNLTKSYGTGEG-------EVTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDG-QDIS 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 83 QM---------------VFQDPlsSLNPRLPVWRIITEPLWIAKRSSEQqRRALAEELAVQVGIrPEYLDRLPHAFSGGQ 147
Cdd:COG1136 74 SLserelarlrrrhigfVFQFF--NLLPELTALENVALPLLLAGVSRKE-RRERARELLERVGL-GDRLDHRPSQLSGGQ 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16129442 148 RQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMsDRVAVMYLGQIVE 223
Cdd:COG1136 150 QQRVAIARALVNRPKLILADEPTGNLDSKTGEEVLELLRELNRELGTTIVMVTHDPELAARA-DRVIRLRDGRIVS 224
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1-238 |
7.56e-53 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 176.44 E-value: 7.56e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 1 MSDTLLTLRDVHINFparknwlGKTTehvhAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQR 80
Cdd:COG3842 1 MAMPALELENVSKRY-------GDVT----ALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGR-ILLDGRD 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 81 I---------MQMVFQDPlsSLNPRLPVWRIITEPLWIAKRSSEQQRRALAEELAvQVGIrPEYLDRLPHAFSGGQRQRI 151
Cdd:COG3842 69 VtglppekrnVGMVFQDY--ALFPHLTVAENVAFGLRMRGVPKAEIRARVAELLE-LVGL-EGLADRYPHQLSGGQQQRV 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 152 AIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHN----VSvirhMSDRVAVMYLGQIVELGDA 227
Cdd:COG3842 145 ALARALAPEPRVLLLDEPLSALDAKLREEMREELRRLQRELGITFIYVTHDqeeaLA----LADRIAVMNDGRIEQVGTP 220
|
250
....*....|.
gi 16129442 228 QQVLTAPAHPY 238
Cdd:COG3842 221 EEIYERPATRF 231
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
22-225 |
9.57e-53 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 171.93 E-value: 9.57e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 22 LGKTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQRIMQ---------MVFQDPlsS 92
Cdd:cd03259 6 LSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGE-ILIDGRDVTGvpperrnigMVFQDY--A 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 93 LNPRLPVWRIITEPLWIAKRSSEQQRRAlAEELAVQVGIRpEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSA 172
Cdd:cd03259 83 LFPHLTVAENIAFGLKLRGVPKAEIRAR-VRELLELVGLE-GLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSA 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 16129442 173 LDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELG 225
Cdd:cd03259 161 LDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
29-265 |
4.36e-52 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 180.82 E-value: 4.36e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 29 VHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQ------YIRSGSQRI------------------MQM 84
Cdd:PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLvqcdkmLLRRRSRQVielseqsaaqmrhvrgadMAM 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 85 VFQDPLSSLNPRLPVWRIITEPLWIAKRSSEQQRRALAEELAVQVGIrPE---YLDRLPHAFSGGQRQRIAIARALSSQP 161
Cdd:PRK10261 109 IFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRI-PEaqtILSRYPHQLSGGMRQRVMIAMALSCRP 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 162 DVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTAPAHPYTRL 241
Cdd:PRK10261 188 AVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFHAPQHPYTRA 267
|
250 260
....*....|....*....|....
gi 16129442 242 LLDSLPAIDkpleeewALRKTDLP 265
Cdd:PRK10261 268 LLAAVPQLG-------AMKGLDYP 284
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
5-246 |
1.08e-51 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 170.17 E-value: 1.08e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 5 LLTLRDVHINFparknwlgkttEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPS------HGQYIRSGS 78
Cdd:COG1126 1 MIEIENLHKSF-----------GDLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDsgtitvDGEDLTDSK 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 79 QRIMQ------MVFQdplsSLN--PRLPVWRIITEPLWIAKRSSEQQRRALAEELAVQVGIrPEYLDRLPHAFSGGQRQR 150
Cdd:COG1126 70 KDINKlrrkvgMVFQ----QFNlfPHLTVLENVTLAPIKVKKMSKAEAEERAMELLERVGL-ADKADAYPAQLSGGQQQR 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 151 IAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENhGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQV 230
Cdd:COG1126 145 VAIARALAMEPKVMLFDEPTSALDPELVGEVLDVMRDLAKE-GMTMVVVTHEMGFAREVADRVVFMDGGRIVEEGPPEEF 223
|
250
....*....|....*.
gi 16129442 231 LTAPAHPYTRLLLDSL 246
Cdd:COG1126 224 FENPQHERTRAFLSKV 239
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
6-234 |
2.77e-51 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 168.66 E-value: 2.77e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 6 LTLRDVHINFParknwlgkttEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQY-----------I 74
Cdd:COG1122 1 IELENLSFSYP----------GGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVlvdgkditkknL 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 75 RSGSQRImQMVFQDP--------------LSSLNPRLPvwriiteplwiakrssEQQRRALAEELAVQVGIRpEYLDRLP 140
Cdd:COG1122 71 RELRRKV-GLVFQNPddqlfaptveedvaFGPENLGLP----------------REEIRERVEEALELVGLE-HLADRPP 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 141 HAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENhGLTYVLISHNVSVIRHMSDRVAVMYLGQ 220
Cdd:COG1122 133 HELSGGQKQRVAIAGVLAMEPEVLVLDEPTAGLDPRGRRELLELLKRLNKE-GKTVIIVTHDLDLVAELADRVIVLDDGR 211
|
250
....*....|....
gi 16129442 221 IVELGDAQQVLTAP 234
Cdd:COG1122 212 IVADGTPREVFSDY 225
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1-216 |
3.20e-51 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 169.50 E-value: 3.20e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 1 MSDTLLTLRDVHINFPARKNwlgktteHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPS------HGQYI 74
Cdd:COG1116 3 AAAPALELRGVSKRFPTGGG-------GVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTsgevlvDGKPV 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 75 RSGSQRIMqMVFQDPlsSLNPRLPVWRIITEPLWIAKRSSEQqRRALAEELAVQVGIRpEYLDRLPHAFSGGQRQRIAIA 154
Cdd:COG1116 76 TGPGPDRG-VVFQEP--ALLPWLTVLDNVALGLELRGVPKAE-RRERARELLELVGLA-GFEDAYPHQLSGGMRQRVAIA 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16129442 155 RALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVS-VIRhMSDRVAVM 216
Cdd:COG1116 151 RALANDPEVLLMDEPFGALDALTRERLQDELLRLWQETGKTVLFVTHDVDeAVF-LADRVVVL 212
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
8-240 |
9.29e-50 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 164.98 E-value: 9.29e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 8 LRDVHINFPARknwlgktteHVHaiNGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPS------HGQYIRSGSQ-- 79
Cdd:cd03261 3 LRGLTKSFGGR---------TVL--KGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDsgevliDGEDISGLSEae 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 80 -----RIMQMVFQDP--LSSLNprlpVWRIITEPLWIAKRSSEQQRRALAEELAVQVGIRPeYLDRLPHAFSGGQRQRIA 152
Cdd:cd03261 72 lyrlrRRMGMLFQSGalFDSLT----VFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRG-AEDLYPAELSGGMKKRVA 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 153 IARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLT 232
Cdd:cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226
|
....*...
gi 16129442 233 APaHPYTR 240
Cdd:cd03261 227 SD-DPLVR 233
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
6-216 |
2.02e-49 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 163.80 E-value: 2.02e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 6 LTLRDVHINFPARKNWlgkttehVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGsQRIMQ-- 83
Cdd:cd03293 1 LEVRNVSKTYGGGGGA-------VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDG-EPVTGpg 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 84 ----MVFQDPlsSLNPRLPVWRIITEPLWIaKRSSEQQRRALAEELAVQVGIRpEYLDRLPHAFSGGQRQRIAIARALSS 159
Cdd:cd03293 73 pdrgYVFQQD--ALLPWLTVLDNVALGLEL-QGVPKAEARERAEELLELVGLS-GFENAYPHQLSGGMRQRVALARALAV 148
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 16129442 160 QPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVM 216
Cdd:cd03293 149 DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVL 205
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
1-248 |
4.39e-49 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 163.94 E-value: 4.39e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 1 MSDTLLTLRDvhinfparknwLGKTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQ-------- 72
Cdd:PRK11701 2 MDQPLLSVRG-----------LTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEvhyrmrdg 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 73 -----YIRSGSQRIMQM------VFQDPLSSLNPRLPVWRIITEPLWIAKRSSEQQRRALAEELAVQVGIRPEYLDRLPH 141
Cdd:PRK11701 71 qlrdlYALSEAERRRLLrtewgfVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPT 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 142 AFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQI 221
Cdd:PRK11701 151 TFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRV 230
|
250 260
....*....|....*....|....*...
gi 16129442 222 VELGDAQQVLTAPAHPYTRLLLDS-LPA 248
Cdd:PRK11701 231 VESGLTDQVLDDPQHPYTQLLVSSvLQV 258
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
7-270 |
1.27e-48 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 165.36 E-value: 1.27e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 7 TLRDVHINFPARKNWlgkttehVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSG--------- 77
Cdd:PRK11153 3 ELKNISKVFPQGGRT-------IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGqdltalsek 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 78 ----SQRIMQMVFQ--DPLSSLNprlpVWRIITEPLWIAKRSSEQQRRALAEELAVqVGIRpEYLDRLPHAFSGGQRQRI 151
Cdd:PRK11153 76 elrkARRQIGMIFQhfNLLSSRT----VFDNVALPLELAGTPKAEIKARVTELLEL-VGLS-DKADRYPAQLSGGQKQRV 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 152 AIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVL 231
Cdd:PRK11153 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVF 229
|
250 260 270
....*....|....*....|....*....|....*....
gi 16129442 232 TAPAHPYTRLLLDSLPAIDKPLEEEWALRKTDLPGNRTL 270
Cdd:PRK11153 230 SHPKHPLTREFIQSTLHLDLPEDYLARLQAEPTTGSGPL 268
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
18-221 |
4.02e-48 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 160.35 E-value: 4.02e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 18 RKNWlGKTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQRIMQM------------- 84
Cdd:cd03255 7 SKTY-GGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE-VRVDGTDISKLsekelaafrrrhi 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 85 --VFQDPlsSLNPRLPVWRIITEPLWIAKRSSEQqRRALAEELAVQVGIrPEYLDRLPHAFSGGQRQRIAIARALSSQPD 162
Cdd:cd03255 85 gfVFQSF--NLLPDLTALENVELPLLLAGVPKKE-RRERAEELLERVGL-GDRLNHYPSELSGGQQQRVAIARALANDPK 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 16129442 163 VIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHmSDRVAVMYLGQI 221
Cdd:cd03255 161 IILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEY-ADRIIELRDGKI 218
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
22-231 |
6.72e-47 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 157.53 E-value: 6.72e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 22 LGKTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQY------IRSGSQRIMQM---VFQDPlsS 92
Cdd:COG1131 6 LTKRYGDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVrvlgedVARDPAEVRRRigyVPQEP--A 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 93 LNPRLPVWRIITeplWIAK--RSSEQQRRALAEELAVQVGIrPEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPT 170
Cdd:COG1131 84 LYPDLTVRENLR---FFARlyGLPRKEARERIDELLELFGL-TDAADRKVGTLSGGMKQRLGLALALLHDPELLILDEPT 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16129442 171 SALDISVQAQILNLLVTLQEnHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVL 231
Cdd:COG1131 160 SGLDPEARRELWELLRELAA-EGKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELK 219
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
24-235 |
2.31e-46 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 156.24 E-value: 2.31e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 24 KTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGS--------QRIMQMVFQDplSSLNP 95
Cdd:cd03300 8 KFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKditnlpphKRPVNTVFQN--YALFP 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 96 RLPVWRIITEPLWIAKRSSEQQRRALAEELA-VQVGirpEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALD 174
Cdd:cd03300 86 HLTVFENIAFGLRLKKLPKAEIKERVAEALDlVQLE---GYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALD 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16129442 175 ISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTAPA 235
Cdd:cd03300 163 LKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEPA 223
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
31-220 |
8.15e-46 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 154.16 E-value: 8.15e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 31 AINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSG----SQRIMQ------MVFQDPLSSL-NPRlpv 99
Cdd:cd03225 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGkdltKLSLKElrrkvgLVFQNPDDQFfGPT--- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 100 wriITEPLWIAKRS---SEQQRRALAEELAVQVGIRpEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDIS 176
Cdd:cd03225 93 ---VEEEVAFGLENlglPEEEIEERVEEALELVGLE-GLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPA 168
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 16129442 177 VQAQILNLLVTLQENhGLTYVLISHNVSVIRHMSDRVAVMYLGQ 220
Cdd:cd03225 169 GRRELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
5-287 |
6.36e-45 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 155.35 E-value: 6.36e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 5 LLTLRDVHINFPARKNWlgkttehVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMG-------------------M 65
Cdd:PRK15093 3 LLDIRNLTIEFKTSDGW-------VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGvtkdnwrvtadrmrfddidL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 66 LQPSHGQYiRSGSQRIMQMVFQDPLSSLNPRLPVWRIITE--PLWIAK-----RSSEQQRRALaeELAVQVGIRPEY--L 136
Cdd:PRK15093 76 LRLSPRER-RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQniPGWTYKgrwwqRFGWRKRRAI--ELLHRVGIKDHKdaM 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 137 DRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVM 216
Cdd:PRK15093 153 RSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVL 232
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16129442 217 YLGQIVELGDAQQVLTAPAHPYTRLLLDSLPAIDKPLEEEwaLRKTDLPGN----RTLPQGCFFYERCPLATHGC 287
Cdd:PRK15093 233 YCGQTVETAPSKELVTTPHHPYTQALIRAIPDFGSAMPHK--SRLNTLPGAipllEHLPIGCRLGPRCPYAQREC 305
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
24-220 |
6.70e-45 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 150.42 E-value: 6.70e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 24 KTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQ------------YIRSGSQRIMQMVFQDPls 91
Cdd:cd03229 8 KRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSilidgedltdleDELPPLRRRIGMVFQDF-- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 92 SLNPRLPVWRIITEPLwiakrsseqqrralaeelavqvgirpeyldrlphafSGGQRQRIAIARALSSQPDVIVLDEPTS 171
Cdd:cd03229 86 ALFPHLTVLENIALGL------------------------------------SGGQQQRVALARALAMDPDVLLLDEPTS 129
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 16129442 172 ALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQ 220
Cdd:cd03229 130 ALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
30-230 |
9.77e-45 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 151.95 E-value: 9.77e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 30 HAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGML-----QPSHGQYIRSGS------------QRIMQMVFQDPlss 92
Cdd:cd03260 14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNdlipgAPDEGEVLLDGKdiydldvdvlelRRRVGMVFQKP--- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 93 lNP-RLPVWRIITEPLWIAKRSSEQQRRALAEELAVQVGIRPEYLDRL-PHAFSGGQRQRIAIARALSSQPDVIVLDEPT 170
Cdd:cd03260 91 -NPfPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLhALGLSGGQQQRLCLARALANEPEVLLLDEPT 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 171 SALDISVQAQILNLLVTLQENHglTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQV 230
Cdd:cd03260 170 SALDPISTAKIEELIAELKKEY--TIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
17-240 |
1.96e-44 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 152.41 E-value: 1.96e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 17 ARKNWLGKTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQ-YI-------------RSGSQRIM 82
Cdd:cd03294 25 KSKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKvLIdgqdiaamsrkelRELRRKKI 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 83 QMVFQDplSSLNPRLPVWRIITEPLWIAKRSsEQQRRALAEELAVQVGIRPeYLDRLPHAFSGGQRQRIAIARALSSQPD 162
Cdd:cd03294 105 SMVFQS--FALLPHRTVLENVAFGLEVQGVP-RAEREERAAEALELVGLEG-WEHKYPDELSGGMQQRVGLARALAVDPD 180
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16129442 163 VIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTAPAHPYTR 240
Cdd:cd03294 181 ILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDYVR 258
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-235 |
1.13e-43 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 149.47 E-value: 1.13e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 1 MSDTLLTLRDVHINFparknwlgkttEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHG------QYI 74
Cdd:COG1121 2 MMMPAIELENLTVSY-----------GGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGtvrlfgKPP 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 75 RSGSQRI---MQMvfqdplSSLNPRLP--VWRIITEPLW----IAKRSSEQQRRALAEELAvQVGIRpEYLDRLPHAFSG 145
Cdd:COG1121 71 RRARRRIgyvPQR------AEVDWDFPitVRDVVLMGRYgrrgLFRRPSRADREAVDEALE-RVGLE-DLADRPIGELSG 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 146 GQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQEnHGLTYVLISHNVSVIRHMSDRVAVMyLGQIVELG 225
Cdd:COG1121 143 GQQQRVLLARALAQDPDLLLLDEPFAGVDAATEEALYELLRELRR-EGKTILVVTHDLGAVREYFDRVLLL-NRGLVAHG 220
|
250
....*....|
gi 16129442 226 DAQQVLTAPA 235
Cdd:COG1121 221 PPEEVLTPEN 230
|
|
| ECF_ATPase_2 |
TIGR04521 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
24-232 |
1.67e-43 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 149.91 E-value: 1.67e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 24 KTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQRIMQ--------------MVFQDP 89
Cdd:TIGR04521 13 GTPFEKKALDDVSLTIEDGEFVAIIGHTGSGKSTLIQHLNGLLKPTSGT-VTIDGRDITAkkkkklkdlrkkvgLVFQFP 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 90 LSSL-----------NPR-LPVwriiteplwiakrsSEQQRRALAEELAVQVGIRPEYLDRLPHAFSGGQRQRIAIARAL 157
Cdd:TIGR04521 92 EHQLfeetvykdiafGPKnLGL--------------SEEEAEERVKEALELVGLDEEYLERSPFELSGGQMRRVAIAGVL 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16129442 158 SSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLT 232
Cdd:TIGR04521 158 AMEPEVLILDEPTAGLDPKGRKEILDLFKRLHKEKGLTVILVTHSMEDVAEYADRVIVMHKGKIVLDGTPREVFS 232
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
5-233 |
2.19e-42 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 146.34 E-value: 2.19e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 5 LLTLRDVHINFPARknwlgkttehvHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQRIMQM 84
Cdd:COG1120 1 MLEAENLSVGYGGR-----------PVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGE-VLLDGRDLASL 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 85 -----------VFQDPLSSLN------------PRLPVWRiiteplwiakRSSEQQRRALAEELAvQVGIRpEYLDRLPH 141
Cdd:COG1120 69 srrelarriayVPQEPPAPFGltvrelvalgryPHLGLFG----------RPSAEDREAVEEALE-RTGLE-HLADRPVD 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 142 AFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQI 221
Cdd:COG1120 137 ELSGGERQRVLIARALAQEPPLLLLDEPTSHLDLAHQLEVLELLRRLARERGRTVVMVLHDLNLAARYADRLVLLKDGRI 216
|
250
....*....|..
gi 16129442 222 VELGDAQQVLTA 233
Cdd:COG1120 217 VAQGPPEEVLTP 228
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
1-239 |
2.91e-42 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 148.76 E-value: 2.91e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 1 MSdtlLTLRDVHINFPARknwlgkttehvHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQ-------- 72
Cdd:COG1118 1 MS---IEVRNISKRFGSF-----------TLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRivlngrdl 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 73 YIRSGSQ-RIMQMVFQDPLssLNPRLPVWRIITEPLWIAKRsSEQQRRALAEELAVQVGIrPEYLDRLPHAFSGGQRQRI 151
Cdd:COG1118 67 FTNLPPReRRVGFVFQHYA--LFPHMTVAENIAFGLRVRPP-SKAEIRARVEELLELVQL-EGLADRYPSQLSGGQRQRV 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 152 AIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVL 231
Cdd:COG1118 143 ALARALAVEPEVLLLDEPFGALDAKVRKELRRWLRRLHDELGGTTVFVTHDQEEALELADRVVVMNQGRIEQVGTPDEVY 222
|
....*...
gi 16129442 232 TAPAHPYT 239
Cdd:COG1118 223 DRPATPFV 230
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
1-236 |
3.11e-42 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 148.68 E-value: 3.11e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 1 MSDtlLTLRDVHINFparknwlGKttehVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQR 80
Cdd:COG3839 1 MAS--LELENVSKSY-------GG----VEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGE-ILIGGRD 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 81 I---------MQMVFQDPlsSLNPRLPVWRIITEPLWIAKRSsEQQRRALAEELAVQVGIRPeYLDRLPHAFSGGQRQRI 151
Cdd:COG3839 67 VtdlppkdrnIAMVFQSY--ALYPHMTVYENIAFPLKLRKVP-KAEIDRRVREAAELLGLED-LLDRKPKQLSGGQRQRV 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 152 AIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHN----VSvirhMSDRVAVMYLGQIVELGDA 227
Cdd:COG3839 143 ALGRALVREPKVFLLDEPLSNLDAKLRVEMRAEIKRLHRRLGTTTIYVTHDqveaMT----LADRIAVMNDGRIQQVGTP 218
|
....*....
gi 16129442 228 QQVLTAPAH 236
Cdd:COG3839 219 EELYDRPAN 227
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
2-240 |
3.49e-42 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 145.95 E-value: 3.49e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 2 SDTLLTLRDVHInfparknWLGKTtehvHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGM--LQPS---------H 70
Cdd:COG1117 8 LEPKIEVRNLNV-------YYGDK----QALKDINLDIPENKVTALIGPSGCGKSTLLRCLNRMndLIPGarvegeillD 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 71 GQYIRSGS-------QRIMqMVFQDPlsslNPrLP--VWRIITEPLWIAKRSSEQQRRALAEELAVQVGIRPEYLDRL-- 139
Cdd:COG1117 77 GEDIYDPDvdvvelrRRVG-MVFQKP----NP-FPksIYDNVAYGLRLHGIKSKSELDEIVEESLRKAALWDEVKDRLkk 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 140 -PHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALD-ISVqAQILNLLVTLQENHglTYVLISHNVSVIRHMSDRVAVMY 217
Cdd:COG1117 151 sALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDpIST-AKIEELILELKKDY--TIVIVTHNMQQAARVSDYTAFFY 227
|
250 260
....*....|....*....|...
gi 16129442 218 LGQIVELGDAQQVLTAPAHPYTR 240
Cdd:COG1117 228 LGELVEFGPTEQIFTNPKDKRTE 250
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
30-221 |
5.25e-42 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 144.21 E-value: 5.25e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 30 HAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPS------HGQYIRSGSQRIMQ------MVFQDplSSLNPRL 97
Cdd:cd03262 14 HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDsgtiiiDGLKLTDDKKNINElrqkvgMVFQQ--FNLFPHL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 98 PVWRIITEPLWIAKRSSEQQRRALAEELAVQVGIrPEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISV 177
Cdd:cd03262 92 TVLENITLAPIKVKGMSKAEAEERALELLEKVGL-ADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPEL 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 16129442 178 QAQILNLLVTLQENhGLTYVLISHNVSVIRHMSDRVAVMYLGQI 221
Cdd:cd03262 171 VGEVLDVMKDLAEE-GMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
24-245 |
2.13e-41 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 143.60 E-value: 2.13e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 24 KTTEHVH-AINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQRIMQmvfQDPLS----------- 91
Cdd:cd03295 8 KRYGGGKkAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGE-IFIDGEDIRE---QDPVElrrkigyviqq 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 92 -SLNPRLPVWRIITEPLWIAKRSsEQQRRALAEELAVQVGIRP-EYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEP 169
Cdd:cd03295 84 iGLFPHMTVEENIALVPKLLKWP-KEKIRERADELLALVGLDPaEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEP 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16129442 170 TSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTAPAHPYTRLLLDS 245
Cdd:cd03295 163 FGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPANDFVAEFVGA 238
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
35-243 |
2.47e-41 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 142.97 E-value: 2.47e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 35 IDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSG--------SQRIMQMVFQDplSSLNPRLPVWRIITEP 106
Cdd:COG3840 18 FDLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGqdltalppAERPVSMLFQE--NNLFPHLTVAQNIGLG 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 107 LWIAKRSSEQQRRALAEELAvQVGIRpEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLV 186
Cdd:COG3840 96 LRPGLKLTAEQRAQVEQALE-RVGLA-GLLDRLPGQLSGGQRQRVALARCLVRKRPILLLDEPFSALDPALRQEMLDLVD 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 16129442 187 TLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTAPAHPYTRLLL 243
Cdd:COG3840 174 ELCRERGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAALLDGEPPPALAAYL 230
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
6-220 |
6.06e-41 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 140.21 E-value: 6.06e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 6 LTLRDVHINFPARKNWlgkttehvhAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQRIMQM- 84
Cdd:cd03228 1 IEFKNVSFSYPGRPKP---------VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGE-ILIDGVDLRDLd 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 85 ----------VFQDPlsslnprlpvwriiteplWIAKRSseqqrraLAEELavqvgirpeyldrlphaFSGGQRQRIAIA 154
Cdd:cd03228 71 leslrkniayVPQDP------------------FLFSGT-------IRENI-----------------LSGGQRQRIAIA 108
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16129442 155 RALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHglTYVLISHNVSVIRHMsDRVAVMYLGQ 220
Cdd:cd03228 109 RALLRDPPILILDEATSALDPETEALILEALRALAKGK--TVIVIAHRLSTIRDA-DRIIVLDDGR 171
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
6-241 |
1.16e-40 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 149.98 E-value: 1.16e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 6 LTLRDVHINFPARKNWlgkttehvhAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQRIMQ-- 83
Cdd:COG2274 474 IELENVSFRYPGDSPP---------VLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGR-ILIDGIDLRQid 543
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 84 ---------MVFQDPL---SSL--NprlpvwriITepLWIAKRSSEQQRRALAeelavQVGIRpEYLDRLPH-------- 141
Cdd:COG2274 544 paslrrqigVVLQDVFlfsGTIreN--------IT--LGDPDATDEEIIEAAR-----LAGLH-DFIEALPMgydtvvge 607
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 142 ---AFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLvtLQENHGLTYVLISHNVSVIRHmSDRVAVMYL 218
Cdd:COG2274 608 ggsNLSGGQRQRLAIARALLRNPRILILDEATSALDAETEAIILENL--RRLLKGRTVIIIAHRLSTIRL-ADRIIVLDK 684
|
250 260
....*....|....*....|...
gi 16129442 219 GQIVELGDAQQVLTAPAHpYTRL 241
Cdd:COG2274 685 GRIVEDGTHEELLARKGL-YAEL 706
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
6-221 |
1.29e-40 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 140.34 E-value: 1.29e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 6 LTLRDVHINFPARKNWlgkttehvhaiNGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIrsgsqrimqmv 85
Cdd:COG4619 1 LELEGLSFRVGGKPIL-----------SPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIY----------- 58
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 86 FQD-PLSSLNPrlPVWR-----IITEPLWIAKR-----------SSEQQRRALAEELAVQVGIRPEYLDRLPHAFSGGQR 148
Cdd:COG4619 59 LDGkPLSAMPP--PEWRrqvayVPQEPALWGGTvrdnlpfpfqlRERKFDRERALELLERLGLPPDILDKPVERLSGGER 136
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16129442 149 QRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQI 221
Cdd:COG4619 137 QRLALIRALLLQPDVLLLDEPTSALDPENTRRVEELLREYLAEEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
32-244 |
1.51e-40 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 141.81 E-value: 1.51e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 32 INGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQRI-------------------MQMVFQDplSS 92
Cdd:PRK11264 19 LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGT-IRVGDITIdtarslsqqkglirqlrqhVGFVFQN--FN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 93 LNPRLPVWRIITEPLWIAKRSSEQQRRALAEELAVQVGIRPEYlDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSA 172
Cdd:PRK11264 96 LFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKE-TSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSA 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16129442 173 LDISVQAQILNLLVTLQENHgLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTAPAHPYTRLLLD 244
Cdd:PRK11264 175 LDPELVGEVLNTIRQLAQEK-RTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQQPRTRQFLE 245
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
6-231 |
4.84e-40 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 146.83 E-value: 4.84e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 6 LTLRDVHINFPARKNwlgkttehvhAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGqyirsgsqRIMqmV 85
Cdd:COG4988 337 IELEDVSFSYPGGRP----------ALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSG--------SIL--I 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 86 FQDPLSSLNPRlPVWRIITeplWIAKR-------------------SSEQQRRALAeelavQVGIRpEYLDRLPH----- 141
Cdd:COG4988 397 NGVDLSDLDPA-SWRRQIA---WVPQNpylfagtirenlrlgrpdaSDEELEAALE-----AAGLD-EFVAALPDgldtp 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 142 ------AFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHglTYVLISHNVSVIRHMsDRVAV 215
Cdd:COG4988 467 lgeggrGLSGGQAQRLALARALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAKGR--TVILITHRLALLAQA-DRILV 543
|
250
....*....|....*.
gi 16129442 216 MYLGQIVELGDAQQVL 231
Cdd:COG4988 544 LDDGRIVEQGTHEELL 559
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
4-222 |
7.18e-40 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 139.81 E-value: 7.18e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 4 TLLTLRDVHINFPARKnwlgkttehvHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQRIMQ 83
Cdd:COG3638 1 PMLELRNLSKRYPGGT----------PALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGE-ILVDGQDVTA 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 84 --------------MVFQDPlsSLNPRLPV--------------WRIITePLWiakrSSEQQRRALaEELAvQVGIrPEY 135
Cdd:COG3638 70 lrgralrrlrrrigMIFQQF--NLVPRLSVltnvlagrlgrtstWRSLL-GLF----PPEDRERAL-EALE-RVGL-ADK 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 136 LDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAV 215
Cdd:COG3638 140 AYQRADQLSGGQQQRVAIARALVQEPKLILADEPVASLDPKTARQVMDLLRRIAREDGITVVVNLHQVDLARRYADRIIG 219
|
....*..
gi 16129442 216 MYLGQIV 222
Cdd:COG3638 220 LRDGRVV 226
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
24-225 |
1.56e-39 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 137.77 E-value: 1.56e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 24 KTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSG--------SQRIMQMVFQDplSSLNP 95
Cdd:cd03301 8 KRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGrdvtdlppKDRDIAMVFQN--YALYP 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 96 RLPVWRIITEPLWIAKRSSE---QQRRALAEELAVQvgirpEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSA 172
Cdd:cd03301 86 HMTVYDNIAFGLKLRKVPKDeidERVREVAELLQIE-----HLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSN 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 16129442 173 LDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELG 225
Cdd:cd03301 161 LDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
30-221 |
2.40e-39 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 135.99 E-value: 2.40e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 30 HAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPS------HGQYIRSGSQRIMQM---VFQDPlsSLNPRLPVW 100
Cdd:cd03230 14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDsgeikvLGKDIKKEPEEVKRRigyLPEEP--SLYENLTVR 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 101 riiteplwiakrsseqqrralaeelavqvgirpEYLDrlphaFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQ 180
Cdd:cd03230 92 ---------------------------------ENLK-----LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRRE 133
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 16129442 181 ILNLLVTLQENhGLTYVLISHNVSVIRHMSDRVAVMYLGQI 221
Cdd:cd03230 134 FWELLRELKKE-GKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
6-235 |
2.57e-39 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 137.95 E-value: 2.57e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 6 LTLRDVHINFparknwlGKttehVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQRIMQM- 84
Cdd:cd03219 1 LEVRGLTKRF-------GG----LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGS-VLFDGEDITGLp 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 85 -----------VFQDP--LSSL----NPRLPVWRIITEPLWIAK-RSSEQQRRALAEELAVQVGIRpEYLDRLPHAFSGG 146
Cdd:cd03219 69 pheiarlgigrTFQIPrlFPELtvleNVMVAAQARTGSGLLLARaRREEREARERAEELLERVGLA-DLADRPAGELSYG 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 147 QRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQEnHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGD 226
Cdd:cd03219 148 QQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226
|
....*....
gi 16129442 227 AQQVLTAPA 235
Cdd:cd03219 227 PDEVRNNPR 235
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
22-220 |
5.89e-39 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 134.68 E-value: 5.89e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 22 LGKTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQrimqmvfqdplsslnprlpvwr 101
Cdd:cd00267 5 LSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKD---------------------- 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 102 iiteplwIAKRSSEQQRRalaeelavQVGIRPEyldrlphaFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQI 181
Cdd:cd00267 63 -------IAKLPLEELRR--------RIGYVPQ--------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERL 119
|
170 180 190
....*....|....*....|....*....|....*....
gi 16129442 182 LNLLVTLQEnHGLTYVLISHNVSVIRHMSDRVAVMYLGQ 220
Cdd:cd00267 120 LELLRELAE-EGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
22-231 |
5.96e-39 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 137.30 E-value: 5.96e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 22 LGKTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQ------YIRSGSQRIMQ---MVFQDPlsS 92
Cdd:COG4555 7 LSKKYGKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSilidgeDVRKEPREARRqigVLPDER--G 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 93 LNPRLPVWRII--TEPLWiakRSSEQQRRALAEELAVQVGIRpEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPT 170
Cdd:COG4555 85 LYDRLTVRENIryFAELY---GLFDEELKKRIEELIELLGLE-EFLDRRVGELSTGMKKKVALARALVHDPKVLLLDEPT 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16129442 171 SALDISVQAQILNLLVTLQeNHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVL 231
Cdd:COG4555 161 NGLDVMARRLLREILRALK-KEGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELR 220
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
2-235 |
8.07e-39 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 137.09 E-value: 8.07e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 2 SDTLLTLRDVHINFparknwlGKttehVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQRI 81
Cdd:COG0411 1 SDPLLEVRGLTKRF-------GG----LVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGR-ILFDGRDI 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 82 MQM------------VFQDP-----LSSL-NPRLPVWRIITEPLWIAK------RSSEQQRRALAEELAVQVGIRpEYLD 137
Cdd:COG0411 69 TGLpphriarlgiarTFQNPrlfpeLTVLeNVLVAAHARLGRGLLAALlrlpraRREEREARERAEELLERVGLA-DRAD 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 138 RLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMY 217
Cdd:COG0411 148 EPAGNLSYGQQRRLEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDERGITILLIEHDMDLVMGLADRIVVLD 227
|
250
....*....|....*...
gi 16129442 218 LGQIVELGDAQQVLTAPA 235
Cdd:COG0411 228 FGRVIAEGTPAEVRADPR 245
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
36-232 |
1.10e-38 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 136.25 E-value: 1.10e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 36 DLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSG--------SQRIMQMVFQDplSSLNPRLPVWRIITEPL 107
Cdd:PRK10771 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGqdhtttppSRRPVSMLFQE--NNLFSHLTVAQNIGLGL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 108 WIAKRSSEQQRRALaEELAVQVGIRpEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVT 187
Cdd:PRK10771 97 NPGLKLNAAQREKL-HAIARQMGIE-DLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQ 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 16129442 188 LQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLT 232
Cdd:PRK10771 175 VCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
6-222 |
1.60e-38 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 133.71 E-value: 1.60e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 6 LTLRDVHINFPArknwlgkttehVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQrimqmv 85
Cdd:cd03216 1 LELRGITKRFGG-----------VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGE-ILVDGK------ 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 86 fqdPLSSLNPRLpvwriiteplwiakrsseqqrralaeelAVQVGIRpeyldrLPHAFSGGQRQRIAIARALSSQPDVIV 165
Cdd:cd03216 63 ---EVSFASPRD----------------------------ARRAGIA------MVYQLSVGERQMVEIARALARNARLLI 105
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 16129442 166 LDEPTSALDISVQAQILNLLVTLQENhGLTYVLISHNVSVIRHMSDRVAVMYLGQIV 222
Cdd:cd03216 106 LDEPTAALTPAEVERLFKVIRRLRAQ-GVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
29-223 |
1.82e-38 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 135.18 E-value: 1.82e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 29 VHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQ-----------------YIRsgsqRIMQMVFQDplS 91
Cdd:COG2884 15 REALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQvlvngqdlsrlkrreipYLR----RRIGVVFQD--F 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 92 SLNPRLPVWRIITEPLWIAKRSSEQQRRALAEELAvQVGIRpEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTS 171
Cdd:COG2884 89 RLLPDRTVYENVALPLRVTGKSRKEIRRRVREVLD-LVGLS-DKAKALPHELSGGEQQRVAIARALVNRPELLLADEPTG 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 16129442 172 ALDISVQAQILNLLVTLQENhGLTYVLISHNVSVIRHMSDRVAVMYLGQIVE 223
Cdd:COG2884 167 NLDPETSWEIMELLEEINRR-GTTVLIATHDLELVDRMPKRVLELEDGRLVR 217
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
6-242 |
5.01e-38 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 141.44 E-value: 5.01e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 6 LTLRDVHINFPARKNWlgkttehvhAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQY------IRSGSQ 79
Cdd:COG4987 334 LELEDVSFRYPGAGRP---------VLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSItlggvdLRDLDE 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 80 ----RIMQMVFQDP---LSSL--NPRLpvwriiteplwiAKR--SSEQQRRALAeelavQVGIRPeYLDRLPH------- 141
Cdd:COG4987 405 ddlrRRIAVVPQRPhlfDTTLreNLRL------------ARPdaTDEELWAALE-----RVGLGD-WLAALPDgldtwlg 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 142 ----AFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLtyVLISHNVSVIRHMsDRVAVMY 217
Cdd:COG4987 467 eggrRLSGGERRRLALARALLRDAPILLLDEPTEGLDAATEQALLADLLEALAGRTV--LLITHRLAGLERM-DRILVLE 543
|
250 260
....*....|....*....|....*
gi 16129442 218 LGQIVELGDAQQVLTAPAHpYTRLL 242
Cdd:COG4987 544 DGRIVEQGTHEELLAQNGR-YRQLY 567
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
1-239 |
6.67e-38 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 137.77 E-value: 6.67e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 1 MSDTLLTLRDVhinfpaRKNWLGKTtehvhAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSG--- 77
Cdd:PRK09452 10 SLSPLVELRGI------SKSFDGKE-----VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGqdi 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 78 -----SQRIMQMVFQDplSSLNPRLPVWRIITEPLWIAKRSSEQQRRALAEELA-VQVgirPEYLDRLPHAFSGGQRQRI 151
Cdd:PRK09452 79 thvpaENRHVNTVFQS--YALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRmVQL---EEFAQRKPHQLSGGQQQRV 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 152 AIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVL 231
Cdd:PRK09452 154 AIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIY 233
|
....*...
gi 16129442 232 TAPAHPYT 239
Cdd:PRK09452 234 EEPKNLFV 241
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
32-171 |
1.07e-37 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 131.23 E-value: 1.07e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 32 INGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQ----------YIRSGSQRIMQMVFQDPlsSLNPRLPVWR 101
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTilldgqdltdDERKSLRKEIGYVFQDP--QLFPRLTVRE 78
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16129442 102 IITEPLWI---AKRSSEQQRRALAEELAvQVGIRPEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTS 171
Cdd:pfam00005 79 NLRLGLLLkglSKREKDARAEEALEKLG-LGDLADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
34-234 |
1.26e-37 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 133.62 E-value: 1.26e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 34 GIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGS--------QRIMQMVFQDplSSLNPRLPVWRIITE 105
Cdd:cd03299 17 NVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKditnlppeKRDISYVPQN--YALFPHMTVYKNIAY 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 106 PLWIAKRS-SEQQRRALaeELAVQVGIRpEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNL 184
Cdd:cd03299 95 GLKKRKVDkKEIERKVL--EIAEMLGID-HLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREE 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 16129442 185 LVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTAP 234
Cdd:cd03299 172 LKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKP 221
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
32-245 |
1.44e-37 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 134.06 E-value: 1.44e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 32 INGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQP----SHGQYIRSGSQ--------RIMQMVFQDPLSSLNPRLPV 99
Cdd:PRK10418 19 VHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAgvrqTAGRVLLDGKPvapcalrgRKIATIMQNPRSAFNPLHTM 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 100 WRIITEPLWIAKRSSEQQRRALAEElAVQVGIRPEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQA 179
Cdd:PRK10418 99 HTHARETCLALGKPADDATLTAALE-AVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQA 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16129442 180 QILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTAPAHPYTRLLLDS 245
Cdd:PRK10418 178 RILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPKHAVTRSLVSA 243
|
|
| potA |
TIGR01187 |
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine ... |
47-238 |
1.45e-37 |
|
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 162242 [Multi-domain] Cd Length: 325 Bit Score: 136.08 E-value: 1.45e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 47 IVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQ--------RIMQMVFQDplSSLNPRLPVWRIITEPLWIAKRSSEQQR 118
Cdd:TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDvtnvpphlRHINMVFQS--YALFPHMTVEENVAFGLKMRKVPRAEIK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 119 RALAEELA-VQVGirpEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYV 197
Cdd:TIGR01187 79 PRVLEALRlVQLE---EFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFV 155
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 16129442 198 LISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTAPAHPY 238
Cdd:TIGR01187 156 FVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLF 196
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
32-225 |
1.66e-37 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 131.40 E-value: 1.66e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 32 INGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyirsgsqrIMqmVFQDPLSSLNPRlpvwriiteplWIAK 111
Cdd:cd03214 15 LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGE--------IL--LDGKDLASLSPK-----------ELAR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 112 RsseqqrRALAEELAVQVGIRpEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQEN 191
Cdd:cd03214 74 K------IAYVPQALELLGLA-HLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARE 146
|
170 180 190
....*....|....*....|....*....|....
gi 16129442 192 HGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELG 225
Cdd:cd03214 147 RGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
31-238 |
2.75e-37 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 132.85 E-value: 2.75e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 31 AINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSG--------SQRIMQMVFQDplSSLNPRLPVWRI 102
Cdd:cd03296 17 ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGedatdvpvQERNVGFVFQH--YALFRHMTVFDN 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 103 ITEPLWIAKRS---SEQQRRALAEELAVQVGIRpEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQA 179
Cdd:cd03296 95 VAFGLRVKPRSerpPEAEIRAKVHELLKLVQLD-WLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRK 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 16129442 180 QILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTAPAHPY 238
Cdd:cd03296 174 ELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPASPF 232
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
31-227 |
4.27e-37 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 132.44 E-value: 4.27e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 31 AINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQ----------------RIMQMVFQDplSSLN 94
Cdd:COG4161 17 ALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGHQfdfsqkpsekairllrQKVGMVFQQ--YNLW 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 95 PRLPVWRIITE-PLWIAKRSsEQQRRALAEELAVQVGIRpEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSAL 173
Cdd:COG4161 95 PHLTVMENLIEaPCKVLGLS-KEQAREKAMKLLARLRLT-DKADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAAL 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 16129442 174 DISVQAQILNLLVTLQENhGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDA 227
Cdd:COG4161 173 DPEITAQVVEIIRELSQT-GITQVIVTHEVEFARKVASQVVYMEKGRIIEQGDA 225
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
31-235 |
4.87e-37 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 133.61 E-value: 4.87e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 31 AINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQRI---------------MQMVFQDPLSSLNP 95
Cdd:PRK13634 22 ALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGT-VTIGERVItagkknkklkplrkkVGIVFQFPEHQLFE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 96 RLPVWRIITEPLWIAkrSSEQQRRALAEELAVQVGIRPEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDI 175
Cdd:PRK13634 101 ETVEKDICFGPMNFG--VSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDP 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 176 SVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTAPA 235
Cdd:PRK13634 179 KGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADPD 238
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
29-230 |
1.94e-36 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 130.88 E-value: 1.94e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 29 VHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSG-------------SQRIMQMVFQD-----PL 90
Cdd:TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGtditklrgkklrkLRRRIGMIFQHynlieRL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 91 SS----LNPRL---PVWRIITEPLwiakrSSEQQRRALaeELAVQVGIRPEYLDRLpHAFSGGQRQRIAIARALSSQPDV 163
Cdd:TIGR02315 95 TVlenvLHGRLgykPTWRSLLGRF-----SEEDKERAL--SALERVGLADKAYQRA-DQLSGGQQQRVAIARALAQQPDL 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16129442 164 IVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQV 230
Cdd:TIGR02315 167 ILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
22-241 |
2.33e-36 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 133.81 E-value: 2.33e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 22 LGKTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGS--------QRIMQMVFQDplSSL 93
Cdd:PRK11607 25 LTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVdlshvppyQRPINMMFQS--YAL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 94 NPRLPVWRIITEPLWIAKRSSEQQRRALAEELAVqVGIRpEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSAL 173
Cdd:PRK11607 103 FPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGL-VHMQ-EFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGAL 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16129442 174 DISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLtapAHPYTRL 241
Cdd:PRK11607 181 DKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIY---EHPTTRY 245
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
32-224 |
2.91e-36 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 129.89 E-value: 2.91e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 32 INGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQ-------RIMqmVFQDplSSLNPrlpvWRIIT 104
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQitepgpdRMV--VFQN--YSLLP----WLTVR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 105 EPLWIAKRS-----SEQQRRALAEELAVQVGIRpEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQA 179
Cdd:TIGR01184 73 ENIALAVDRvlpdlSKSERRAIVEEHIALVGLT-EAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRG 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 16129442 180 QILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVM------YLGQIVEL 224
Cdd:TIGR01184 152 NLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLtngpaaNIGQILEV 202
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
1-231 |
2.93e-36 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 131.51 E-value: 2.93e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 1 MSDTLLTLRDVHINFParknwlgkttEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSG--- 77
Cdd:PRK13636 1 MEDYILKVEELNYNYS----------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGkpi 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 78 ---SQRIMQ------MVFQDPLSSLNPRLPVWRIITEPLWIAKRSSEQQRRAlaEELAVQVGIRPeYLDRLPHAFSGGQR 148
Cdd:PRK13636 71 dysRKGLMKlresvgMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRV--DNALKRTGIEH-LKDKPTHCLSFGQK 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 149 QRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQ 228
Cdd:PRK13636 148 KRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPK 227
|
...
gi 16129442 229 QVL 231
Cdd:PRK13636 228 EVF 230
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
31-241 |
4.33e-36 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 136.06 E-value: 4.33e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 31 AINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQRIMQ-----------MVFQDPL---SSL--N 94
Cdd:COG1132 355 VLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGR-ILIDGVDIRDltleslrrqigVVPQDTFlfsGTIreN 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 95 prlpvwriITepLWIAKRSSEQQRRALAeelAVQVGirpEYLDRLPH-----------AFSGGQRQRIAIARALSSQPDV 163
Cdd:COG1132 434 --------IR--YGRPDATDEEVEEAAK---AAQAH---EFIEALPDgydtvvgergvNLSGGQRQRIAIARALLKDPPI 497
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16129442 164 IVLDEPTSALDISVQAQILNLLVTLQENHglTYVLISHNVSVIRHMsDRVAVMYLGQIVELGDAQQVLTAPAHpYTRL 241
Cdd:COG1132 498 LILDEATSALDTETEALIQEALERLMKGR--TTIVIAHRLSTIRNA-DRILVLDDGRIVEQGTHEELLARGGL-YARL 571
|
|
| LolD_lipo_ex |
TIGR02211 |
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ... |
32-223 |
5.06e-36 |
|
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 131266 [Multi-domain] Cd Length: 221 Bit Score: 129.01 E-value: 5.06e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 32 INGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPS------HGQYIRSGSQ--------RIMQMVFQdpLSSLNPRL 97
Cdd:TIGR02211 21 LKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTsgevlfNGQSLSKLSSneraklrnKKLGFIYQ--FHHLLPDF 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 98 PVWRIITEPLWIAKRS-SEQQRRALAEELAVQVGIRpeyLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDIS 176
Cdd:TIGR02211 99 TALENVAMPLLIGKKSvKEAKERAYEMLEKVGLEHR---INHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNN 175
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 16129442 177 VQAQILNLLVTLQENHGLTYVLISHNVSVIRHMsDRVAVMYLGQIVE 223
Cdd:TIGR02211 176 NAKIIFDLMLELNRELNTSFLVVTHDLELAKKL-DRVLEMKDGQLFN 221
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
1-228 |
7.86e-36 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 128.71 E-value: 7.86e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 1 MSDTLLTLRDVHINFPARknwlgktTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQR 80
Cdd:COG4181 4 SSAPIIELRGLTKTVGTG-------AGELTILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGT-VRLAGQD 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 81 IMQM---------------VFQDplSSLNPRLPVWRIITEPLWIAkrsSEQQRRALAEELAVQVGIRpEYLDRLPHAFSG 145
Cdd:COG4181 76 LFALdedararlrarhvgfVFQS--FQLLPTLTALENVMLPLELA---GRRDARARARALLERVGLG-HRLDHYPAQLSG 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 146 GQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHmSDRVAVMYLGQIVELG 225
Cdd:COG4181 150 GEQQRVALARAFATEPAILFADEPTGNLDAATGEQIIDLLFELNRERGTTLVLVTHDPALAAR-CDRVLRLRAGRLVEDT 228
|
...
gi 16129442 226 DAQ 228
Cdd:COG4181 229 AAT 231
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
4-223 |
1.99e-35 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 128.44 E-value: 1.99e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 4 TLLTLRDVHINFPARKnwlgkttEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQRIMQ 83
Cdd:COG4525 2 SMLTVRHVSVRYPGGG-------QPQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGE-ITLDGVPVTG 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 84 ------MVFQDplSSLNPRLPVWRIITEPLWIAKRSsEQQRRALAEELAVQVGIRpEYLDRLPHAFSGGQRQRIAIARAL 157
Cdd:COG4525 74 pgadrgVVFQK--DALLPWLNVLDNVAFGLRLRGVP-KAERRARAEELLALVGLA-DFARRRIWQLSGGMRQRVGIARAL 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16129442 158 SSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVM--YLGQIVE 223
Cdd:COG4525 150 AADPRFLLMDEPFGALDALTREQMQELLLDVWQRTGKGVFLITHSVEEALFLATRLVVMspGPGRIVE 217
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
36-225 |
3.63e-35 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 126.45 E-value: 3.63e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 36 DLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSG--------SQRIMQMVFQDplSSLNPRLPVWRIITEPL 107
Cdd:cd03298 18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGvdvtaappADRPVSMLFQE--NNLFAHLTVEQNVGLGL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 108 WIAKRSSEQQRRALAEELAvQVGIRpEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVT 187
Cdd:cd03298 96 SPGLKLTAEDRQAIEVALA-RVGLA-GLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLD 173
|
170 180 190
....*....|....*....|....*....|....*...
gi 16129442 188 LQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELG 225
Cdd:cd03298 174 LHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
35-225 |
4.19e-35 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 126.26 E-value: 4.19e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 35 IDLQIRrGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGS--------------QRIMQMVFQDplSSLNPRLPVW 100
Cdd:cd03297 17 IDFDLN-EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTvlfdsrkkinlppqQRKIGLVFQQ--YALFPHLNVR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 101 RIITeplWIAKRSSEQQRRALAEELAVQVGIRPeYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQ 180
Cdd:cd03297 94 ENLA---FGLKRKRNREDRISVDELLDLLGLDH-LLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQ 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 16129442 181 ILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELG 225
Cdd:cd03297 170 LLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
35-228 |
4.55e-35 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 127.05 E-value: 4.55e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 35 IDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQ----------------RIMQMVFQDplSSLNPRLP 98
Cdd:PRK11124 21 ITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHfdfsktpsdkairelrRNVGMVFQQ--YNLWPHLT 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 99 VWRIITE-PLWIAKRSsEQQRRALAEELAVQVGIRpEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISV 177
Cdd:PRK11124 99 VQQNLIEaPCRVLGLS-KDQALARAEKLLERLRLK-PYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEI 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 16129442 178 QAQILNLLVTLQENhGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQ 228
Cdd:PRK11124 177 TAQIVSIIRELAET-GITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
22-230 |
5.79e-35 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 126.91 E-value: 5.79e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 22 LGKTTEH-VHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQ-------------RIMQMVFQ 87
Cdd:cd03256 6 LSKTYPNgKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDinklkgkalrqlrRQIGMIFQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 88 DPlsSLNPRLPVW------RIITEPLW--IAKRSSEQQRRALAEELAvQVGIRPEYLDRLpHAFSGGQRQRIAIARALSS 159
Cdd:cd03256 86 QF--NLIERLSVLenvlsgRLGRRSTWrsLFGLFPKEEKQRALAALE-RVGLLDKAYQRA-DQLSGGQQQRVAIARALMQ 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16129442 160 QPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTyVLIS-HNVSVIRHMSDRVAVMYLGQIVELGDAQQV 230
Cdd:cd03256 162 QPKLILADEPVASLDPASSRQVMDLLKRINREEGIT-VIVSlHQVDLAREYADRIVGLKDGRIVFDGPPAEL 232
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
35-268 |
3.05e-34 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 127.91 E-value: 3.05e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 35 IDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGqYIRSGS---------------QRIMQMVFQDPlsSLNPRLPV 99
Cdd:COG4148 18 VDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSG-RIRLGGevlqdsargiflpphRRRIGYVFQEA--RLFPHLSV 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 100 WRIItepLWIAKRSSEQQRRALAEELAVQVGIRPeYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQA 179
Cdd:COG4148 95 RGNL---LYGRKRAPRAERRISFDEVVELLGIGH-LLDRRPATLSGGERQRVAIGRALLSSPRLLLMDEPLAALDLARKA 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 180 QILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTAPAHpyTRLLLDS-----LPAIDKPLE 254
Cdd:COG4148 171 EILPYLERLRDELDIPILYVSHSLDEVARLADHVVLLEQGRVVASGPLAEVLSRPDL--LPLAGGEeagsvLEATVAAHD 248
|
250
....*....|....
gi 16129442 255 EEWALRKTDLPGNR 268
Cdd:COG4148 249 PDYGLTRLALGGGR 262
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
28-216 |
7.56e-34 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 123.03 E-value: 7.56e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 28 HVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSG-----SQRIMQMVFQdpLSSLNPRLP--VW 100
Cdd:cd03235 11 GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGkplekERKRIGYVPQ--RRSIDRDFPisVR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 101 RIITEPLW----IAKRSSEQQRRALAEELAvQVGIRpEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDIS 176
Cdd:cd03235 89 DVVLMGLYghkgLFRRLSKADKAKVDEALE-RVGLS-ELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPK 166
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 16129442 177 VQAQILNLLVTLQEnHGLTYVLISHNVSVIRHMSDRVAVM 216
Cdd:cd03235 167 TQEDIYELLRELRR-EGMTILVVTHDLGLVLEYFDRVLLL 205
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
29-231 |
9.46e-34 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 129.15 E-value: 9.46e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 29 VHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQ-YIRSG----------------SQRIMQMVFQDplS 91
Cdd:TIGR03269 297 VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEvNVRVGdewvdmtkpgpdgrgrAKRYIGILHQE--Y 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 92 SLNPRLPVWRIITEPLWIAKRSSEQQRRALAeeLAVQVGIRPEY----LDRLPHAFSGGQRQRIAIARALSSQPDVIVLD 167
Cdd:TIGR03269 375 DLYPHRTVLDNLTEAIGLELPDELARMKAVI--TLKMVGFDEEKaeeiLDKYPDELSEGERHRVALAQVLIKEPRIVILD 452
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16129442 168 EPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVL 231
Cdd:TIGR03269 453 EPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIV 516
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
31-225 |
3.28e-33 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 121.71 E-value: 3.28e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 31 AINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGS---------QRIMQMVFQDPlsSLNPRLPVWr 101
Cdd:cd03265 15 AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHdvvreprevRRRIGIVFQDL--SVDDELTGW- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 102 iitEPLWIAKR---SSEQQRRALAEELAVQVGIRpEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQ 178
Cdd:cd03265 92 ---ENLYIHARlygVPGAERRERIDELLDFVGLL-EAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTR 167
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 16129442 179 AQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELG 225
Cdd:cd03265 168 AHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEG 214
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
35-238 |
3.79e-33 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 124.84 E-value: 3.79e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 35 IDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGS--------------QRIMQMVFQDplSSLNPRLPVW 100
Cdd:TIGR02142 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRtlfdsrkgiflppeKRRIGYVFQE--ARLFPHLSVR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 101 RIITEPLWiakRSSEQQRRALAEELAVQVGIRPeYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQ 180
Cdd:TIGR02142 94 GNLRYGMK---RARPSERRISFERVIELLGIGH-LLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYE 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 16129442 181 ILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTAPAHPY 238
Cdd:TIGR02142 170 ILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPW 227
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
2-230 |
6.45e-33 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 126.67 E-value: 6.45e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 2 SDTLLTLRDVHINFPArknwlgkttehVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSG---- 77
Cdd:COG1129 1 AEPLLEMRGISKSFGG-----------VKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGepvr 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 78 ------SQR--ImQMVFQDPlsSLNPRLPVW------RIITEPLWIAKRSSEQQRRALAEELavQVGIRPeylDRLPHAF 143
Cdd:COG1129 70 frsprdAQAagI-AIIHQEL--NLVPNLSVAeniflgREPRRGGLIDWRAMRRRARELLARL--GLDIDP---DTPVGDL 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 144 SGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQEnHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVE 223
Cdd:COG1129 142 SVAQQQLVEIARALSRDARVLILDEPTASLTEREVERLFRIIRRLKA-QGVAIIYISHRLDEVFEIADRVTVLRDGRLVG 220
|
....*..
gi 16129442 224 LGDAQQV 230
Cdd:COG1129 221 TGPVAEL 227
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
20-221 |
6.77e-33 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 121.71 E-value: 6.77e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 20 NWLGKTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGS------QRIMQMVFQDPlssl 93
Cdd:PRK11247 16 NAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGE-LLAGTaplaeaREDTRLMFQDA---- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 94 npRLPVWRIITEPLWIAKRSS--EQQRRALAEelavqVGIRPEYLDrLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTS 171
Cdd:PRK11247 91 --RLLPWKKVIDNVGLGLKGQwrDAALQALAA-----VGLADRANE-WPAALSGGQKQRVALARALIHRPGLLLLDEPLG 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 16129442 172 ALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQI 221
Cdd:PRK11247 163 ALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
23-230 |
8.08e-33 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 122.12 E-value: 8.08e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 23 GKTTEHVhAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQ--------RIMQ---MVFQDPLS 91
Cdd:PRK13633 18 EESTEKL-ALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDtsdeenlwDIRNkagMVFQNPDN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 92 SLnprlpVWRIITE------------PLWIAKRSSEQQRRalaeelavqVGIRpEYLDRLPHAFSGGQRQRIAIARALSS 159
Cdd:PRK13633 97 QI-----VATIVEEdvafgpenlgipPEEIRERVDESLKK---------VGMY-EYRRHAPHLLSGGQKQRVAIAGILAM 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16129442 160 QPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHnvsvirHM-----SDRVAVMYLGQIVELGDAQQV 230
Cdd:PRK13633 162 RPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITH------YMeeaveADRIIVMDSGKVVMEGTPKEI 231
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
7-231 |
1.04e-32 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 120.72 E-value: 1.04e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 7 TLRDVHINFPARKNwlgkttehVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGsqrimqmvf 86
Cdd:cd03249 2 EFKNVSFRYPSRPD--------VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDG--------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 87 qDPLSSLNPRLpvWR-----IITEPLWIA------------KRSSEQQRRAlaeelAVQVGIRpEYLDRLPHAF------ 143
Cdd:cd03249 65 -VDIRDLNLRW--LRsqiglVSQEPVLFDgtiaenirygkpDATDEEVEEA-----AKKANIH-DFIMSLPDGYdtlvge 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 144 -----SGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQEnhGLTYVLISHNVSVIRHmSDRVAVMYL 218
Cdd:cd03249 136 rgsqlSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMK--GRTTIVIAHRLSTIRN-ADLIAVLQN 212
|
250
....*....|...
gi 16129442 219 GQIVELGDAQQVL 231
Cdd:cd03249 213 GQVVEQGTHDELM 225
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
29-229 |
1.07e-32 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 120.30 E-value: 1.07e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 29 VHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQ------YIRSGSQRIMQMV---FQDplSSLNPRLPV 99
Cdd:cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTayingySIRTDRKAARQSLgycPQF--DALFDELTV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 100 WriitEPLWI---AKRSSEQQRRALAEELAVQVGIRPeYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDIS 176
Cdd:cd03263 93 R----EHLRFyarLKGLPKSEIKEEVELLLRVLGLTD-KANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPA 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 16129442 177 VQAQILNLLVTLQENHglTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQ 229
Cdd:cd03263 168 SRRAIWDLILEVRKGR--SIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQE 218
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
32-222 |
1.68e-32 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 119.28 E-value: 1.68e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 32 INGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGS-------QRIMQMVFQDPLSSLNpRLPVWRIIT 104
Cdd:cd03226 16 LDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKpikakerRKSIGYVMQDVDYQLF-TDSVREELL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 105 EPLWIAKRSSEQQRRALAE-ELAvqvgirpEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILN 183
Cdd:cd03226 95 LGLKELDAGNEQAETVLKDlDLY-------ALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGE 167
|
170 180 190
....*....|....*....|....*....|....*....
gi 16129442 184 LLVTLQeNHGLTYVLISHNVSVIRHMSDRVAVMYLGQIV 222
Cdd:cd03226 168 LIRELA-AQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
13-241 |
2.09e-32 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 120.20 E-value: 2.09e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 13 INFPARKNWLGKTTehvhAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYI---------RSGSQRIMQ 83
Cdd:PRK09493 2 IEFKNVSKHFGPTQ----VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIvdglkvndpKVDERLIRQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 84 ---MVFQDplSSLNPRLPVWR-IITEPLWIaKRSSEQQRRALAEELAVQVGIRpEYLDRLPHAFSGGQRQRIAIARALSS 159
Cdd:PRK09493 78 eagMVFQQ--FYLFPHLTALEnVMFGPLRV-RGASKEEAEKQARELLAKVGLA-ERAHHYPSELSGGQQQRVAIARALAV 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 160 QPDVIVLDEPTSALDISVQAQILNLLVTLQENhGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTAPahPYT 239
Cdd:PRK09493 154 KPKLMLFDEPTSALDPELRHEVLKVMQDLAEE-GMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNP--PSQ 230
|
..
gi 16129442 240 RL 241
Cdd:PRK09493 231 RL 232
|
|
| thiQ |
TIGR01277 |
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ... |
36-226 |
2.10e-32 |
|
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. [Transport and binding proteins, Other]
Pssm-ID: 130344 [Multi-domain] Cd Length: 213 Bit Score: 119.20 E-value: 2.10e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 36 DLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSG--------SQRIMQMVFQDplSSLNPRLPVWRIITEPL 107
Cdd:TIGR01277 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDqshtglapYQRPVSMLFQE--NNLFAHLTVRQNIGLGL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 108 WIA-KRSSEQQRRAlaEELAVQVGIrPEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLV 186
Cdd:TIGR01277 96 HPGlKLNAEQQEKV--VDAAQQVGI-ADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVK 172
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 16129442 187 TLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGD 226
Cdd:TIGR01277 173 QLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
27-231 |
1.13e-31 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 117.71 E-value: 1.13e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 27 EHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQRIMQMvfqdPLSSLNPRLPVwrIITEP 106
Cdd:cd03254 14 EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQ-ILIDGIDIRDI----SRKSLRSMIGV--VLQDT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 107 LWIA-------KRSSEQQRRALAEELAVQVGIRpEYLDRLPHA-----------FSGGQRQRIAIARALSSQPDVIVLDE 168
Cdd:cd03254 87 FLFSgtimeniRLGRPNATDEEVIEAAKEAGAH-DFIMKLPNGydtvlgenggnLSQGERQLLAIARAMLRDPKILILDE 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16129442 169 PTSALDISVQAQILNLLVTLQENHglTYVLISHNVSVIRHmSDRVAVMYLGQIVELGDAQQVL 231
Cdd:cd03254 166 ATSNIDTETEKLIQEALEKLMKGR--TSIIIAHRLSTIKN-ADKILVLDDGKIIEEGTHDELL 225
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
5-234 |
1.24e-31 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 119.03 E-value: 1.24e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 5 LLTLRDVHINFParknwlgKTTEhvhAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGS------ 78
Cdd:PRK13639 1 ILETRDLKYSYP-------DGTE---ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEpikydk 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 79 ------QRIMQMVFQDPLSSLNPRLPVWRIITEPLWIAKRSSEQQRRAlaEELAVQVGIRpEYLDRLPHAFSGGQRQRIA 152
Cdd:PRK13639 71 ksllevRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRV--KEALKAVGME-GFENKPPHHLSGGQKKRVA 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 153 IARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQEnHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLT 232
Cdd:PRK13639 148 IAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK-EGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226
|
..
gi 16129442 233 AP 234
Cdd:PRK13639 227 DI 228
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
23-223 |
2.40e-31 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 118.34 E-value: 2.40e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 23 GKTTEHVhAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHG---------------QYIRSGSQRImQMVFQ 87
Cdd:PRK13646 15 GTPYEHQ-AIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGtvtvdditithktkdKYIRPVRKRI-GMVFQ 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 88 DPLSSLNPRLPVWRIITEPLWIAKRSSEQQRRALaeELAVQVGIRPEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLD 167
Cdd:PRK13646 93 FPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAH--RLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLD 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 16129442 168 EPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVE 223
Cdd:PRK13646 171 EPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVS 226
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
25-232 |
2.56e-31 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 118.17 E-value: 2.56e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 25 TTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQ--------------YIRSGsqriMQMVFQDPL 90
Cdd:PRK13632 18 PNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEikidgitiskenlkEIRKK----IGIIFQNPD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 91 SSLnprlpvwrI-ITEPLWIA-----KRSSEQQRRALAEELAVQVGIRpEYLDRLPHAFSGGQRQRIAIARALSSQPDVI 164
Cdd:PRK13632 94 NQF--------IgATVEDDIAfglenKKVPPKKMKDIIDDLAKKVGME-DYLDKEPQNLSGGQKQRVAIASVLALNPEII 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16129442 165 VLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVS-VIrhMSDRVAVMYLGQIVELGDAQQVLT 232
Cdd:PRK13632 165 IFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDeAI--LADKVIVFSEGKLIAQGKPKEILN 231
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
31-230 |
4.24e-31 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 117.84 E-value: 4.24e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 31 AINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSG----SQRI--------MQMVFQDPLSSLNPRLP 98
Cdd:PRK13637 22 ALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGvditDKKVklsdirkkVGLVFQYPEYQLFEETI 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 99 VWRIITEPLWIAKRSSEQQRRAL-AEELavqVGIRPE-YLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDIS 176
Cdd:PRK13637 102 EKDIAFGPINLGLSEEEIENRVKrAMNI---VGLDYEdYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPK 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 16129442 177 VQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQV 230
Cdd:PRK13637 179 GRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
1-235 |
5.23e-31 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 119.05 E-value: 5.23e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 1 MSDTLLTLRDVHINFparknwlGKTTehvhAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQ-YI----- 74
Cdd:PRK11432 2 TQKNFVVLKNITKRF-------GSNT----VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQiFIdgedv 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 75 --RSGSQRIMQMVFQDplSSLNPRLPVWRIITEPLWIAKRSSEQQRRALAEELAV--QVGIRPEYLDRLphafSGGQRQR 150
Cdd:PRK11432 71 thRSIQQRDICMVFQS--YALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELvdLAGFEDRYVDQI----SGGQQQR 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 151 IAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQV 230
Cdd:PRK11432 145 VALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
....*
gi 16129442 231 LTAPA 235
Cdd:PRK11432 225 YRQPA 229
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
29-231 |
6.31e-31 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 115.61 E-value: 6.31e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 29 VHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSG-------SQRIMQM----VFQDPlsSLNPRL 97
Cdd:cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGrditglpPHERARAgigyVPEGR--RIFPEL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 98 PVwriiTEPLWIAkrSSEQQRRALAEELAVQVGIRP---EYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALD 174
Cdd:cd03224 91 TV----EENLLLG--AYARRRAKRKARLERVYELFPrlkERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLA 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 16129442 175 ISVQAQILNLLVTLQEnHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVL 231
Cdd:cd03224 165 PKIVEEIFEAIRELRD-EGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
6-221 |
7.97e-31 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 113.85 E-value: 7.97e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 6 LTLRDVHINFPARKNWLgkttehvhaINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQrimqmv 85
Cdd:cd03246 1 LEVENVSFRYPGAEPPV---------LRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGR-VRLDGA------ 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 86 fqdPLSSLNPrlpvwriiteplwiakrsseqqrralaEELAVQVGIRPEYLDRLP-----HAFSGGQRQRIAIARALSSQ 160
Cdd:cd03246 65 ---DISQWDP---------------------------NELGDHVGYLPQDDELFSgsiaeNILSGGQRQRLGLARALYGN 114
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16129442 161 PDVIVLDEPTSALDISVQAQILNLLVTLQENhGLTYVLISHNVSVIRhMSDRVAVMYLGQI 221
Cdd:cd03246 115 PRILVLDEPNSHLDVEGERALNQAIAALKAA-GATRIVIAHRPETLA-SADRILVLEDGRV 173
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
31-282 |
8.15e-31 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 117.01 E-value: 8.15e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 31 AINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGS-----------QRIMQMVFQDPLSSLnprlpV 99
Cdd:PRK13644 17 ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIdtgdfsklqgiRKLVGIVFQNPETQF-----V 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 100 WRIITE------------PLWIAKRSSeqqrRALAEelavqVGIRpEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLD 167
Cdd:PRK13644 92 GRTVEEdlafgpenlclpPIEIRKRVD----RALAE-----IGLE-KYRHRSPKTLSGGQGQCVALAGILTMEPECLIFD 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 168 EPTSALDISVQAQILNLLVTLQENhGLTYVLISHNVSVIrHMSDRVAVMYLGQIVELGDAQQVLTAPAHPYTRLLLDSLp 247
Cdd:PRK13644 162 EVTSMLDPDSGIAVLERIKKLHEK-GKTIVYITHNLEEL-HDADRIIVMDRGKIVLEGEPENVLSDVSLQTLGLTPPSL- 238
|
250 260 270
....*....|....*....|....*....|....*
gi 16129442 248 aIDkpLEEEWALRKTDLPGNRTLPQGCFFYERCPL 282
Cdd:PRK13644 239 -IE--LAENLKMHGVVIPWENTSSPSSFAEEICRL 270
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
6-225 |
1.01e-30 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 113.95 E-value: 1.01e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 6 LTLRDVHINFPARKNWlgkttehvhAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQrimQMV 85
Cdd:cd03247 1 LSINNVSFSYPEQEQQ---------VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVP---VSD 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 86 FQDPLSSLNPRLPvwriiteplwiakrsseQQRRALAEELAVQVGIRpeyldrlphaFSGGQRQRIAIARALSSQPDVIV 165
Cdd:cd03247 69 LEKALSSLISVLN-----------------QRPYLFDTTLRNNLGRR----------FSGGERQRLALARILLQDAPIVL 121
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 166 LDEPTSALDISVQAQILNLLVTLQENHglTYVLISHNVSVIRHMsDRVAVMYLGQIVELG 225
Cdd:cd03247 122 LDEPTVGLDPITERQLLSLIFEVLKDK--TLIWITHHLTGIEHM-DKILFLENGKIIMQG 178
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
1-239 |
5.62e-30 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 114.10 E-value: 5.62e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 1 MSDTLLTLRDVHINFPARKnwlgkttehvhAINGIDLQIRRGETLGIVGESGCGKSTLAQLL--MGMLQPS--------- 69
Cdd:PRK14239 1 MTEPILQVSDLSVYYNKKK-----------ALNSVSLDFYPNEITALIGPSGSGKSTLLRSInrMNDLNPEvtitgsivy 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 70 HGQYIRSGSQRIMQ------MVFQDPlsslNP-RLPVWRIITEPLWIAKRSSEQQRRALAEELAVQVGIRPEYLDRLpH- 141
Cdd:PRK14239 70 NGHNIYSPRTDTVDlrkeigMVFQQP----NPfPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRL-Hd 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 142 ---AFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHglTYVLISHNVSVIRHMSDRVAVMYL 218
Cdd:PRK14239 145 salGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDY--TMLLVTRSMQQASRISDRTGFFLD 222
|
250 260
....*....|....*....|.
gi 16129442 219 GQIVELGDAQQVLTAPAHPYT 239
Cdd:PRK14239 223 GDLIEYNDTKQMFMNPKHKET 243
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
37-240 |
1.24e-29 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 116.29 E-value: 1.24e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 37 LQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSG--------------SQRIMQMVFQDplSSLNPRLPVWRI 102
Cdd:PRK10070 49 LAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGvdiakisdaelrevRRKKIAMVFQS--FALMPHMTVLDN 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 103 ITEPLWIAKRSSEQQRRALAEELAvQVGIRpEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQIL 182
Cdd:PRK10070 127 TAFGMELAGINAEERREKALDALR-QVGLE-NYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQ 204
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 16129442 183 NLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTAPAHPYTR 240
Cdd:PRK10070 205 DELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVR 262
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
31-230 |
1.37e-29 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 113.57 E-value: 1.37e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 31 AINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQ-----------RIMQMVFQDPLSSL------ 93
Cdd:PRK13635 22 ALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGT-ITVGGMvlseetvwdvrRQVGMVFQNPDNQFvgatvq 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 94 --------NPRLPvwriiteplwiakrSSEQQRRAlaEELAVQVGIRpEYLDRLPHAFSGGQRQRIAIARALSSQPDVIV 165
Cdd:PRK13635 101 ddvafgleNIGVP--------------REEMVERV--DQALRQVGME-DFLNREPHRLSGGQKQRVAIAGVLALQPDIII 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16129442 166 LDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHmSDRVAVMYLGQIVELGDAQQV 230
Cdd:PRK13635 164 LDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEEI 227
|
|
| MsbA_rel |
TIGR02204 |
ABC transporter, permease/ATP-binding protein; This protein is related to a Proteobacterial ... |
6-241 |
1.55e-29 |
|
ABC transporter, permease/ATP-binding protein; This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Pssm-ID: 131259 [Multi-domain] Cd Length: 576 Bit Score: 117.88 E-value: 1.55e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 6 LTLRDVHINFPARKNWLgkttehvhAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGS------- 78
Cdd:TIGR02204 338 IEFEQVNFAYPARPDQP--------ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVdlrqldp 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 79 ---QRIMQMVFQDPL----SSL-NPRLPVWRIITEPLWIAKRSSEQQR--RALAEELAVQVGIRPEYLdrlphafSGGQR 148
Cdd:TIGR02204 410 aelRARMALVPQDPVlfaaSVMeNIRYGRPDATDEEVEAAARAAHAHEfiSALPEGYDTYLGERGVTL-------SGGQR 482
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 149 QRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQEnhGLTYVLISHNVSVIRHmSDRVAVMYLGQIVELGdAQ 228
Cdd:TIGR02204 483 QRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMK--GRTTLIIAHRLATVLK-ADRIVVMDQGRIVAQG-TH 558
|
250
....*....|...
gi 16129442 229 QVLTAPAHPYTRL 241
Cdd:TIGR02204 559 AELIAKGGLYARL 571
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
31-231 |
1.72e-29 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 112.32 E-value: 1.72e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 31 AINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGS----------QRIMQMVFQDP-LSSLNprlpv 99
Cdd:cd03251 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHdvrdytlaslRRQIGLVSQDVfLFNDT----- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 100 wriITEPLWIAKR--SSEQQRRALAEELAVqvgirpEYLDRLPHAF-----------SGGQRQRIAIARALSSQPDVIVL 166
Cdd:cd03251 92 ---VAENIAYGRPgaTREEVEEAARAANAH------EFIMELPEGYdtvigergvklSGGQRQRIAIARALLKDPPILIL 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16129442 167 DEPTSALDISVQAQILNLLVTLQENHglTYVLISHNVSVIRHmSDRVAVMYLGQIVELGDAQQVL 231
Cdd:cd03251 163 DEATSALDTESERLVQAALERLMKNR--TTFVIAHRLSTIEN-ADRIVVLEDGKIVERGTHEELL 224
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
32-233 |
1.86e-29 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 112.56 E-value: 1.86e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 32 INGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRsgsqrimqmVFQDPLSSLNPR--------LP----- 98
Cdd:PRK13548 18 LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGE-VR---------LNGRPLADWSPAelarrravLPqhssl 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 99 --------VWRIITEPLwiakRSSEQQRRALAEELAVQVGIRpEYLDRLPHAFSGGQRQRIAIARAL------SSQPDVI 164
Cdd:PRK13548 88 sfpftveeVVAMGRAPH----GLSRAEDDALVAAALAQVDLA-HLAGRDYPQLSGGEQQRVQLARVLaqlwepDGPPRWL 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16129442 165 VLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTA 233
Cdd:PRK13548 163 LLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLTP 231
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
29-256 |
2.13e-29 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 112.97 E-value: 2.13e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 29 VHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQ----------RIMQMVFQDPLSSLNPRLP 98
Cdd:PRK13652 17 KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPitkenirevrKFVGLVFQNPDDQIFSPTV 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 99 VWRIITEPLWIAKRSSEQQRRAlaEELAVQVGIRpEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQ 178
Cdd:PRK13652 97 EQDIAFGPINLGLDEETVAHRV--SSALHMLGLE-ELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGV 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16129442 179 AQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTAP-AHPYTRLLLDSLPAIDKPLEEE 256
Cdd:PRK13652 174 KELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPdLLARVHLDLPSLPKLIRSLQAQ 252
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
1-237 |
2.89e-29 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 112.37 E-value: 2.89e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 1 MSDTLLTLRDVHINFparknwlgktTEHvHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHG------QYI 74
Cdd:PRK10619 1 MSENKLNVIDLHKRY----------GEH-EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGsivvngQTI 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 75 RSGSQRIMQMVFQDP--LSSLNPRLP-------VWRIIT-------EPLWIAKRSsEQQRRALAEELAVQVGIRPEYLDR 138
Cdd:PRK10619 70 NLVRDKDGQLKVADKnqLRLLRTRLTmvfqhfnLWSHMTvlenvmeAPIQVLGLS-KQEARERAVKYLAKVGIDERAQGK 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 139 LPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQEnHGLTYVLISHNVSVIRHMSDRVAVMYL 218
Cdd:PRK10619 149 YPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEMGFARHVSSHVIFLHQ 227
|
250
....*....|....*....
gi 16129442 219 GQIVELGDAQQVLTAPAHP 237
Cdd:PRK10619 228 GKIEEEGAPEQLFGNPQSP 246
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
34-201 |
3.49e-29 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 110.65 E-value: 3.49e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 34 GIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQ-YIRSGSQRIM------QMVFQDPLSSLNPRLPVWRIITep 106
Cdd:COG4133 20 GLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEvLWNGEPIRDAredyrrRLAYLGHADGLKPELTVRENLR-- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 107 lWIAKRSSEQQRRALAEELAVQVGIRPeYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLV 186
Cdd:COG4133 98 -FWAALYGLRADREAIDEALEAVGLAG-LADLPVRQLSAGQKRRVALARLLLSPAPLWLLDEPFTALDAAGVALLAELIA 175
|
170
....*....|....*
gi 16129442 187 TLQENHGLTyVLISH 201
Cdd:COG4133 176 AHLARGGAV-LLTTH 189
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
6-229 |
9.43e-29 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 109.49 E-value: 9.43e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 6 LTLRDVHInfparknwlgkTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPS---------HGQYIRS 76
Cdd:COG4136 2 LSLENLTI-----------TLGGRPLLAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTLSPAfsasgevllNGRRLTA 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 77 GS--QRIMQMVFQDPLssLNPRLPVWRIItePLWIAKRSSEQQRRALAEELAVQVGIrPEYLDRLPHAFSGGQRQRIAIA 154
Cdd:COG4136 71 LPaeQRRIGILFQDDL--LFPHLSVGENL--AFALPPTIGRAQRRARVEQALEEAGL-AGFADRDPATLSGGQRARVALL 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16129442 155 RALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVsvirhmSDRVAVmylGQIVELGDAQQ 229
Cdd:COG4136 146 RALLAEPRALLLDEPFSKLDAALRAQFREFVFEQIRQRGIPALLVTHDE------EDAPAA---GRVLDLGNWQH 211
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
3-233 |
1.04e-28 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 110.56 E-value: 1.04e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 3 DTLLTLRDVHINFPARKnwlgkttehvhAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYI-----RSG 77
Cdd:COG1119 1 DPLLELRNVTVRRGGKT-----------ILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGNDVrlfgeRRG 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 78 S-------QRI------MQMVFQdplsslnPRLPVWRII------TEPLWiaKRSSEQQRRaLAEELAVQVGIRpEYLDR 138
Cdd:COG1119 70 GedvwelrKRIglvspaLQLRFP-------RDETVLDVVlsgffdSIGLY--REPTDEQRE-RARELLELLGLA-HLADR 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 139 LPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYL 218
Cdd:COG1119 139 PFGTLSQGEQRRVLIARALVKDPELLILDEPTAGLDLGARELLLALLDKLAAEGAPTLVLVTHHVEEIPPGITHVLLLKD 218
|
250
....*....|....*
gi 16129442 219 GQIVELGDAQQVLTA 233
Cdd:COG1119 219 GRVVAAGPKEEVLTS 233
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
29-221 |
1.09e-28 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 109.42 E-value: 1.09e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 29 VHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGS-------------QRIMQMVFQDplSSLNP 95
Cdd:cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQdvsdlrgraipylRRKIGVVFQD--FRLLP 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 96 RLPVWRIITEPLWIAKRSSEQQRRALAEELAvQVGIRPEYlDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDI 175
Cdd:cd03292 92 DRNVYENVAFALEVTGVPPREIRKRVPAALE-LVGLSHKH-RALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDP 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 16129442 176 SVQAQILNLLVTLQEnHGLTYVLISHNVSVIRHMSDRVAVMYLGQI 221
Cdd:cd03292 170 DTTWEIMNLLKKINK-AGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
6-222 |
1.33e-28 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 109.60 E-value: 1.33e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 6 LTLRDVHINFPARKNwlgkttehvHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQRIMQM- 84
Cdd:cd03245 3 IEFRNVSFSYPNQEI---------PALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS-VLLDGTDIRQLd 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 85 ----------VFQDPlsslnpRLpVWRIITEPLWIAKRSSEQQRRALAEELAvqvGIRpEYLDRLPHAF----------- 143
Cdd:cd03245 73 padlrrnigyVPQDV------TL-FYGTLRDNITLGAPLADDERILRAAELA---GVT-DFVNKHPNGLdlqigergrgl 141
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16129442 144 SGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQEnhGLTYVLISHNVSVIRhMSDRVAVMYLGQIV 222
Cdd:cd03245 142 SGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPSLLD-LVDRIIVMDSGRIV 217
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1-222 |
1.36e-28 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 114.35 E-value: 1.36e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 1 MSDTLLTLRDVHINFPArknwlgkttehVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQ-YIRSGSQ 79
Cdd:COG3845 1 MMPPALELRGITKRFGG-----------VVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEiLIDGKPV 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 80 RIMQ----------MVFQDPlsSLNPRLPVWR-II--TEPLW---IAKRSSEQQRRALAEELAVQVGirpeyLDRLPHAF 143
Cdd:COG3845 70 RIRSprdaialgigMVHQHF--MLVPNLTVAEnIVlgLEPTKggrLDRKAARARIRELSERYGLDVD-----PDAKVEDL 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 144 SGGQRQRIAIARALSSQPDVIVLDEPTSALdisVQAQILNLLVTLQE--NHGLTYVLISHNVSVIRHMSDRVAVMYLGQI 221
Cdd:COG3845 143 SVGEQQRVEILKALYRGARILILDEPTAVL---TPQEADELFEILRRlaAEGKSIIFITHKLREVMAIADRVTVLRRGKV 219
|
.
gi 16129442 222 V 222
Cdd:COG3845 220 V 220
|
|
| HisP |
COG4598 |
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; |
34-234 |
1.52e-28 |
|
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443652 [Multi-domain] Cd Length: 259 Bit Score: 110.28 E-value: 1.52e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 34 GIDLQIRRGETLGIVGESGCGKSTLAQLlMGML-QPSHGQYI-----------RSGS---------QRI---MQMVFQdp 89
Cdd:COG4598 26 GVSLTARKGDVISIIGSSGSGKSTFLRC-INLLeTPDSGEIRvggeeirlkpdRDGElvpadrrqlQRIrtrLGMVFQ-- 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 90 lsSLN--PRLPVWRIITE-PLWIAKRSsEQQRRALAEELAVQVGIrPEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVL 166
Cdd:COG4598 103 --SFNlwSHMTVLENVIEaPVHVLGRP-KAEAIERAEALLAKVGL-ADKRDAYPAHLSGGQQQRAAIARALAMEPEVMLF 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16129442 167 DEPTSALDISVQAQILNLLVTLQEnHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTAP 234
Cdd:COG4598 179 DEPTSALDPELVGEVLKVMRDLAE-EGRTMLVVTHEMGFARDVSSHVVFLHQGRIEEQGPPAEVFGNP 245
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
31-230 |
1.52e-28 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 110.61 E-value: 1.52e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 31 AINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQRIMQ-----------MVFQDPLSSLnprlpV 99
Cdd:PRK13648 24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGE-IFYNNQAITDdnfeklrkhigIVFQNPDNQF-----V 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 100 WRIITEPLWIAKR----SSEQQRRALAEELAvQVGIRpEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDI 175
Cdd:PRK13648 98 GSIVKYDVAFGLEnhavPYDEMHRRVSEALK-QVDML-ERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDP 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 16129442 176 SVQAQILNLLVTLQENHGLTYVLISHNVSVIRHmSDRVAVMYLGQIVELGDAQQV 230
Cdd:PRK13648 176 DARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEI 229
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
31-233 |
1.93e-28 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 109.50 E-value: 1.93e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 31 AINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGS----------QRIMQMVFQ----------DPL 90
Cdd:cd03252 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHdlaladpawlRRQVGVVLQenvlfnrsirDNI 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 91 SSLNPRLPVWRIIteplwiakrssEQQRRALAEELAVQVgirPEYLDRL----PHAFSGGQRQRIAIARALSSQPDVIVL 166
Cdd:cd03252 97 ALADPGMSMERVI-----------EAAKLAGAHDFISEL---PEGYDTIvgeqGAGLSGGQRQRIAIARALIHNPRILIF 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16129442 167 DEPTSALDISVQAQILNLLVTLQEnhGLTYVLISHNVSVIRHmSDRVAVMYLGQIVELGDAQQVLTA 233
Cdd:cd03252 163 DEATSALDYESEHAIMRNMHDICA--GRTVIIIAHRLSTVKN-ADRIIVMEKGRIVEQGSHDELLAE 226
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
22-223 |
1.98e-28 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 108.46 E-value: 1.98e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 22 LGKTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPShgqyirSGSQRIMQMVFQDPLSSLNpRLPVwr 101
Cdd:cd03268 6 LTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD------SGEITFDGKSYQKNIEALR-RIGA-- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 102 IITEPLWIAKRSSEQQRRALA----------EELAVQVGIRpEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTS 171
Cdd:cd03268 77 LIEAPGFYPNLTARENLRLLArllgirkkriDEVLDVVGLK-DSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTN 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 16129442 172 ALDISVQAQILNLLVTLQENhGLTYVLISHNVSVIRHMSDRVAVMYLGQIVE 223
Cdd:cd03268 156 GLDPDGIKELRELILSLRDQ-GITVLISSHLLSEIQKVADRIGIINKGKLIE 206
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
27-231 |
1.99e-28 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 109.24 E-value: 1.99e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 27 EHVH--------AINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQRIMQMVfqdpLSSLNPRLP 98
Cdd:cd03253 4 ENVTfaydpgrpVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGS-ILIDGQDIREVT----LDSLRRAIG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 99 VWRIITePLW-------IA----KRSSEQQRRA------------LAEELAVQVGIRPEYLdrlphafSGGQRQRIAIAR 155
Cdd:cd03253 79 VVPQDT-VLFndtigynIRygrpDATDEEVIEAakaaqihdkimrFPDGYDTIVGERGLKL-------SGGEKQRVAIAR 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16129442 156 ALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHglTYVLISHNVSVIRHmSDRVAVMYLGQIVELGDAQQVL 231
Cdd:cd03253 151 AILKNPPILLLDEATSALDTHTEREIQAALRDVSKGR--TTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEELL 223
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
3-235 |
3.45e-28 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 108.53 E-value: 3.45e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 3 DTLLTLRDVHINFPArknwlgkttehVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQRIM 82
Cdd:COG0410 1 MPMLEVENLHAGYGG-----------IHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGS-IRFDGEDIT 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 83 QM------------------VFqdplsslnPRLPVWriitEPLWIA---KRSSEQQRRALAE------ELAvqvgirpEY 135
Cdd:COG0410 69 GLpphriarlgigyvpegrrIF--------PSLTVE----ENLLLGayaRRDRAEVRADLERvyelfpRLK-------ER 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 136 LDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENhGLTYVLISHNVSVIRHMSDRVAV 215
Cdd:COG0410 130 RRQRAGTLSGGEQQMLAIGRALMSRPKLLLLDEPSLGLAPLIVEEIFEIIRRLNRE-GVTILLVEQNARFALEIADRAYV 208
|
250 260
....*....|....*....|
gi 16129442 216 MYLGQIVELGDAQQVLTAPA 235
Cdd:COG0410 209 LERGRIVLEGTAAELLADPE 228
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
31-230 |
4.53e-28 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 109.45 E-value: 4.53e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 31 AINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHG------QYIRSGSQR--IMQ------MVFQDPLSSLNPR 96
Cdd:PRK13649 22 ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGsvrvddTLITSTSKNkdIKQirkkvgLVFQFPESQLFEE 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 97 LPVWRIITEP--LWIAKRSSEQqrraLAEELAVQVGIRPEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALD 174
Cdd:PRK13649 102 TVLKDVAFGPqnFGVSQEEAEA----LAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLD 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 16129442 175 ISVQAQILNLLVTLQENhGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQV 230
Cdd:PRK13649 178 PKGRKELMTLFKKLHQS-GMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
32-239 |
5.04e-28 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 108.98 E-value: 5.04e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 32 INGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQ------PSHGQYIRSGS----------QRIMQMVFQDPlsSLNP 95
Cdd:PRK14246 26 LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEiydskiKVDGKVLYFGKdifqidaiklRKEVGMVFQQP--NPFP 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 96 RLPVWRIITEPLWIAKRSSEQQRRALAEELAVQVGIRPEYLDRL---PHAFSGGQRQRIAIARALSSQPDVIVLDEPTSA 172
Cdd:PRK14246 104 HLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLnspASQLSGGQQQRLTIARALALKPKVLLMDEPTSM 183
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16129442 173 LDIsVQAQILNLLVTLQENHgLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTAPAHPYT 239
Cdd:PRK14246 184 IDI-VNSQAIEKLITELKNE-IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELT 248
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
28-225 |
6.78e-28 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 107.45 E-value: 6.78e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 28 HVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQrimqmVFQDPLS------------SLNP 95
Cdd:cd03266 17 TVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFD-----VVKEPAEarrrlgfvsdstGLYD 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 96 RLPVWRIIT--EPLWIAKRSSEQQRralAEELAVQVGIRpEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSAL 173
Cdd:cd03266 92 RLTARENLEyfAGLYGLKGDELTAR---LEELADRLGME-ELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGL 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 16129442 174 DISVQAQILNLLVTLQEnHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELG 225
Cdd:cd03266 168 DVMATRALREFIRQLRA-LGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
24-235 |
9.52e-28 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 109.55 E-value: 9.52e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 24 KTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHG-----------------QYIRSGSQRI----- 81
Cdd:PRK13631 34 KQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGtiqvgdiyigdkknnheLITNPYSKKIknfke 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 82 ----MQMVFQDPLSSLNPRLPVWRIITEPlwIAKRSSEQQRRALAEELAVQVGIRPEYLDRLPHAFSGGQRQRIAIARAL 157
Cdd:PRK13631 114 lrrrVSMVFQFPEYQLFKDTIEKDIMFGP--VALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGIL 191
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16129442 158 SSQPDVIVLDEPTSALDISVQAQILNLLVTLQENhGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTAPA 235
Cdd:PRK13631 192 AIQPEILIFDEPTAGLDPKGEHEMMQLILDAKAN-NKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQH 268
|
|
| type_I_sec_HlyB |
TIGR01846 |
type I secretion system ABC transporter, HlyB family; Type I protein secretion is a system in ... |
32-241 |
1.07e-27 |
|
type I secretion system ABC transporter, HlyB family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273831 [Multi-domain] Cd Length: 694 Bit Score: 112.91 E-value: 1.07e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 32 INGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGS----------QRIMQMVFQDplsslnpRLPVWR 101
Cdd:TIGR01846 473 LSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVdlaiadpawlRRQMGVVLQE-------NVLFSR 545
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 102 IITEPLWIAKRSSEQQRRALAEELAVQVgirpEYLDRLPHAF-----------SGGQRQRIAIARALSSQPDVIVLDEPT 170
Cdd:TIGR01846 546 SIRDNIALCNPGAPFEHVIHAAKLAGAH----DFISELPQGYntevgekganlSGGQRQRIAIARALVGNPRILIFDEAT 621
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16129442 171 SALDISVQAQILNLLVTLQEnhGLTYVLISHNVSVIRHmSDRVAVMYLGQIVELGdAQQVLTAPAHPYTRL 241
Cdd:TIGR01846 622 SALDYESEALIMRNMREICR--GRTVIIIAHRLSTVRA-CDRIIVLEKGQIAESG-RHEELLALQGLYARL 688
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
30-239 |
1.13e-27 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 108.01 E-value: 1.13e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 30 HAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSH-----------GQYIRSGS------QRIMQMVFQDPlsS 92
Cdd:PRK14267 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEearvegevrlfGRNIYSPDvdpievRREVGMVFQYP--N 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 93 LNPRLPVWRIITEPLWIAKRSSEQQRRALAEELAVQ-VGIRPEYLDRL---PHAFSGGQRQRIAIARALSSQPDVIVLDE 168
Cdd:PRK14267 96 PFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKkAALWDEVKDRLndyPSNLSGGQRQRLVIARALAMKPKILLMDE 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16129442 169 PTSALDISVQAQILNLLVTLQENhgLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTAPAHPYT 239
Cdd:PRK14267 176 PTANIDPVGTAKIEELLFELKKE--YTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENPEHELT 244
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
31-231 |
1.55e-27 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 108.28 E-value: 1.55e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 31 AINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGS---------------QRIMQMVFQDPLSSLNP 95
Cdd:PRK13643 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGK-VTVGDivvsstskqkeikpvRKKVGVVFQFPESQLFE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 96 RLPVWRIITEP--LWIAKRSSEQqrraLAEELAVQVGIRPEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSAL 173
Cdd:PRK13643 100 ETVLKDVAFGPqnFGIPKEKAEK----IAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGL 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 16129442 174 DISVQAQILNLLVTLQENhGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVL 231
Cdd:PRK13643 176 DPKARIEMMQLFESIHQS-GQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVF 232
|
|
| type_I_sec_LssB |
TIGR03375 |
type I secretion system ATPase, LssB family; Type I protein secretion is a system in some ... |
8-233 |
1.84e-27 |
|
type I secretion system ATPase, LssB family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274550 [Multi-domain] Cd Length: 694 Bit Score: 112.27 E-value: 1.84e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 8 LRDVHINFPARKNwlgkttehvHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHG----------QYIRSG 77
Cdd:TIGR03375 466 FRNVSFAYPGQET---------PALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGsvlldgvdirQIDPAD 536
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 78 SQRIMQMVFQDPlsslnpRLpVWRIITEPLWIAKRSSEQQRRALAEELAvqvGIRpEYLDRLPHAF-----------SGG 146
Cdd:TIGR03375 537 LRRNIGYVPQDP------RL-FYGTLRDNIALGAPYADDEEILRAAELA---GVT-EFVRRHPDGLdmqigergrslSGG 605
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 147 QRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVtlQENHGLTYVLISHNVSVIRhMSDRVAVMYLGQIVELGD 226
Cdd:TIGR03375 606 QRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLK--RWLAGKTLVLVTHRTSLLD-LVDRIIVMDNGRIVADGP 682
|
....*..
gi 16129442 227 AQQVLTA 233
Cdd:TIGR03375 683 KDQVLEA 689
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
1-233 |
2.03e-27 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 107.09 E-value: 2.03e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 1 MSDtLLTLRDVHINFPAR-------KNWL----GKTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPS 69
Cdd:COG1134 1 MSS-MIEVENVSKSYRLYhepsrslKELLlrrrRTRREEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 70 HGQYIRSGsqRImqmvfqdplSSL-------NPRLPVW-------RIIteplwiaKRSSEQQRRALAE--ELAvQVGirp 133
Cdd:COG1134 80 SGRVEVNG--RV---------SALlelgagfHPELTGReniylngRLL-------GLSRKEIDEKFDEivEFA-ELG--- 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 134 EYLDrLP-HAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGlTYVLISHNVSVIRHMSDR 212
Cdd:COG1134 138 DFID-QPvKTYSSGMRARLAFAVATAVDPDILLVDEVLAVGDAAFQKKCLARIRELRESGR-TVIFVSHSMGAVRRLCDR 215
|
250 260
....*....|....*....|.
gi 16129442 213 VAVMYLGQIVELGDAQQVLTA 233
Cdd:COG1134 216 AIWLEKGRLVMDGDPEEVIAA 236
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
6-235 |
2.86e-27 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 108.78 E-value: 2.86e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 6 LTLRDVhinfpaRKNWLGKTtehvHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQRIMQ-- 83
Cdd:PRK11650 4 LKLQAV------RKSYDGKT----QVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGE-IWIGGRVVNEle 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 84 -------MVFQDplSSLNPRLPVWRIITEPLWIAKrSSEQQRRALAEELAVQVGIRPeYLDRLPHAFSGGQRQRIAIARA 156
Cdd:PRK11650 73 padrdiaMVFQN--YALYPHMSVRENMAYGLKIRG-MPKAEIEERVAEAARILELEP-LLDRKPRELSGGQRQRVAMGRA 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16129442 157 LSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTAPA 235
Cdd:PRK11650 149 IVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPA 227
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
8-224 |
3.95e-27 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 110.54 E-value: 3.95e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 8 LRDVHINFPARKnwLgkttehvhaINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQRI---MQM 84
Cdd:COG0488 1 LENLSKSFGGRP--L---------LDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIPKGLRIgylPQE 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 85 VFQDP--------LSSLNPRLPVWRII-------TEPLWIAKRSSEQQRR----------ALAEELAVQVGIRPEYLDRL 139
Cdd:COG0488 70 PPLDDdltvldtvLDGDAELRALEAELeeleaklAEPDEDLERLAELQEEfealggweaeARAEEILSGLGFPEEDLDRP 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 140 PHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDI-SVQ--AQILNllvtlqeNHGLTYVLISHNvsviRHMSDRVAvm 216
Cdd:COG0488 150 VSELSGGWRRRVALARALLSEPDLLLLDEPTNHLDLeSIEwlEEFLK-------NYPGTVLVVSHD----RYFLDRVA-- 216
|
....*...
gi 16129442 217 ylGQIVEL 224
Cdd:COG0488 217 --TRILEL 222
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
7-225 |
4.24e-27 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 108.58 E-value: 4.24e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 7 TLRDVhinfparknwlGKTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQ-YIrsGSQRI---- 81
Cdd:PRK11000 5 TLRNV-----------TKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDlFI--GEKRMndvp 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 82 -----MQMVFQDplSSLNPRLPVWRIITEPLWIAK-RSSEQQRR--ALAEELavQVGirpEYLDRLPHAFSGGQRQRIAI 153
Cdd:PRK11000 72 paergVGMVFQS--YALYPHLSVAENMSFGLKLAGaKKEEINQRvnQVAEVL--QLA---HLLDRKPKALSGGQRQRVAI 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16129442 154 ARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELG 225
Cdd:PRK11000 145 GRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
6-202 |
6.31e-27 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 110.14 E-value: 6.31e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 6 LTLRDVHINFPARKNwlgkttehvhAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSqrimqmv 85
Cdd:TIGR02868 335 LELRDLSAGYPGAPP----------VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGV------- 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 86 fqdPLSSLNPRLPVWRI-------------ITEPLWIAKR--SSEQQRRALAeelAVQVGirpEYLDRLPH--------- 141
Cdd:TIGR02868 398 ---PVSSLDQDEVRRRVsvcaqdahlfdttVRENLRLARPdaTDEELWAALE---RVGLA---DWLRALPDgldtvlgeg 468
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16129442 142 --AFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLvtLQENHGLTYVLISHN 202
Cdd:TIGR02868 469 gaRLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDL--LAALSGRTVVLITHH 529
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
22-225 |
8.35e-27 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 104.58 E-value: 8.35e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 22 LGKTTEHVHAINGIDLQIRRGeTLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSG-SQRIMQMVFQDPLSSL------N 94
Cdd:cd03264 6 LTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGqDVLKQPQKLRRRIGYLpqefgvY 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 95 PRLPVWRIITEPLWIAKRSSEQQRRALAEEL-AVQVGirpEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSAL 173
Cdd:cd03264 85 PNFTVREFLDYIAWLKGIPSKEVKARVDEVLeLVNLG---DRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGL 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 16129442 174 DISVQAQILNLLVTLQENHglTYVLISHNVSVIRHMSDRVAVMYLGQIVELG 225
Cdd:cd03264 162 DPEERIRFRNLLSELGEDR--IVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
32-234 |
1.14e-26 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 105.20 E-value: 1.14e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 32 INGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRsgsqrimqmVFQDPLSSLNPR--------------- 96
Cdd:COG4559 17 LDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGE-VR---------LNGRPLAAWSPWelarrravlpqhssl 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 97 ---LPVWRIITEPLwIAKRSSEQQRRALAEELAVQVGIRPeYLDRLPHAFSGGQRQRIAIARAL-------SSQPDVIVL 166
Cdd:COG4559 87 afpFTVEEVVALGR-APHGSSAAQDRQIVREALALVGLAH-LAGRSYQTLSGGEQQRVQLARVLaqlwepvDGGPRWLFL 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16129442 167 DEPTSALDISVQAQILNLLVTLQEnHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTAP 234
Cdd:COG4559 165 DEPTSALDLAHQHAVLRLARQLAR-RGGGVVAVLHDLNLAAQYADRILLLHQGRLVAQGTPEEVLTDE 231
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
29-239 |
1.28e-26 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 104.99 E-value: 1.28e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 29 VHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGM--LQPS---HGQYIRSGS----------QRIMQMVFQDPlsSL 93
Cdd:PRK14247 16 VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLieLYPEarvSGEVYLDGQdifkmdvielRRRVQMVFQIP--NP 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 94 NPRLPVWRIITEPL---WIAKRSSE-QQRRALAEELAvqvGIRPEYLDRL--PHA-FSGGQRQRIAIARALSSQPDVIVL 166
Cdd:PRK14247 94 IPNLSIFENVALGLklnRLVKSKKElQERVRWALEKA---QLWDEVKDRLdaPAGkLSGGQQQRLCIARALAFQPEVLLA 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16129442 167 DEPTSALDISVQAQILNLLVTLQENhgLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTAPAHPYT 239
Cdd:PRK14247 171 DEPTANLDPENTAKIESLFLELKKD--MTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNPRHELT 241
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
31-231 |
2.33e-26 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 109.06 E-value: 2.33e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 31 AINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQRIMQMVFQDPLSSLN--PRLPVW---RIITE 105
Cdd:TIGR01193 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGE-ILLNGFSLKDIDRHTLRQFINylPQEPYIfsgSILEN 567
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 106 PLWIAKRSSEQQRRALAEELAvqvGIRPEyLDRLPHAF-----------SGGQRQRIAIARALSSQPDVIVLDEPTSALD 174
Cdd:TIGR01193 568 LLLGAKENVSQDEIWAACEIA---EIKDD-IENMPLGYqtelseegssiSGGQKQRIALARALLTDSKVLILDESTSNLD 643
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 16129442 175 ISVQAQILNLLVTLQENhglTYVLISHNVSVIRhMSDRVAVMYLGQIVELGDAQQVL 231
Cdd:TIGR01193 644 TITEKKIVNNLLNLQDK---TIIFVAHRLSVAK-QSDKIIVLDHGKIIEQGSHDELL 696
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
5-241 |
3.11e-26 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 108.27 E-value: 3.11e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 5 LLTLRDVHINFPARKnwlgkttehVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSG------- 77
Cdd:TIGR02203 330 DVEFRNVTFRYPGRD---------RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGhdladyt 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 78 -----------SQRIMqmVFQDPLSSlNprlpvwriiteplwIAKRSSEQQRRALAEElAVQVGIRPEYLDRLPHAF--- 143
Cdd:TIGR02203 401 laslrrqvalvSQDVV--LFNDTIAN-N--------------IAYGRTEQADRAEIER-ALAAAYAQDFVDKLPLGLdtp 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 144 --------SGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHglTYVLISHNVSVIRHmSDRVAV 215
Cdd:TIGR02203 463 igengvllSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGR--TTLVIAHRLSTIEK-ADRIVV 539
|
250 260
....*....|....*....|....*.
gi 16129442 216 MYLGQIVELGDAQQVLTAPAHpYTRL 241
Cdd:TIGR02203 540 MDDGRIVERGTHNELLARNGL-YAQL 564
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
32-227 |
3.30e-26 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 103.61 E-value: 3.30e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 32 INGIDLQIRRGETLGIVGESGCGKSTLAQLLMGmlqpsHGQY-IRSGS-----QRIMQM------------VFQDPlssl 93
Cdd:COG0396 16 LKGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMG-----HPKYeVTSGSilldgEDILELspderaragiflAFQYP---- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 94 nPRLP------VWRIITEplwiAKRSSEQQRRA---LAEELAVQVGIRPEYLDR-LPHAFSGGQRQRIAIARALSSQPDV 163
Cdd:COG0396 87 -VEIPgvsvsnFLRTALN----ARRGEELSAREflkLLKEKMKELGLDEDFLDRyVNEGFSGGEKKRNEILQMLLLEPKL 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16129442 164 IVLDEPTSALDI-SVQ--AQILNLLvtLQENHGLtyVLISHNVSVIRHMS-DRVAVMYLGQIVELGDA 227
Cdd:COG0396 162 AILDETDSGLDIdALRivAEGVNKL--RSPDRGI--LIITHYQRILDYIKpDFVHVLVDGRIVKSGGK 225
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
31-221 |
4.30e-26 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 101.74 E-value: 4.30e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 31 AINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSqrimqmvfqdPLSSLNPRLpvwriiteplWIA 110
Cdd:cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGK----------PVTRRSPRD----------AIR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 111 KR----SSEQQRRALAEELAVQVGIRpeyldrLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLV 186
Cdd:cd03215 75 AGiayvPEDRKREGLVLDLSVAENIA------LSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIR 148
|
170 180 190
....*....|....*....|....*....|....*
gi 16129442 187 TLQENhGLTYVLISHNVSVIRHMSDRVAVMYLGQI 221
Cdd:cd03215 149 ELADA-GKAVLLISSELDELLGLCDRILVMYEGRI 182
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
32-261 |
5.95e-26 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 104.04 E-value: 5.95e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 32 INGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQ----------RIMQMVFQDPLSSLnprlpVWR 101
Cdd:PRK13650 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLlteenvwdirHKIGMVFQNPDNQF-----VGA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 102 IITEPLWIA---KRSSEQQRRALAEELAVQVGIRpEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQ 178
Cdd:PRK13650 98 TVEDDVAFGlenKGIPHEEMKERVNEALELVGMQ-DFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGR 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 179 AQILNLLVTLQENHGLTYVLISHNVSVIRhMSDRVAVMYLGQIVELGDAQQVLTAPAH--------PYTRLLLDSLPAID 250
Cdd:PRK13650 177 LELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVESTSTPRELFSRGNDllqlgldiPFTTSLVQSLRQNG 255
|
250
....*....|.
gi 16129442 251 KPLEEEWALRK 261
Cdd:PRK13650 256 YDLPEGYLTEK 266
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
24-231 |
6.05e-26 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 104.40 E-value: 6.05e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 24 KTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQ---YIRSGSQRIMQMVFQDPLSSLNPRLPVW 100
Cdd:PRK13651 15 KLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTiewIFKDEKNKKKTKEKEKVLEKLVIQKTRF 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 101 RIITEPLWIAKRS------SEQQ-------------------RRALAEELAVQ----VGIRPEYLDRLPHAFSGGQRQRI 151
Cdd:PRK13651 95 KKIKKIKEIRRRVgvvfqfAEYQlfeqtiekdiifgpvsmgvSKEEAKKRAAKyielVGLDESYLQRSPFELSGGQKRRV 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 152 AIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENhGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVL 231
Cdd:PRK13651 175 ALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQ-GKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDIL 253
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
9-222 |
8.87e-26 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 106.64 E-value: 8.87e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 9 RDVHINFPARKNWLGKT---TEHV---HAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQ--------YI 74
Cdd:COG1129 239 RELEDLFPKRAAAPGEVvleVEGLsvgGVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEirldgkpvRI 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 75 RSGSQRIMQ-MVFqdpLS------SLNPRLPVWRIITEPlWIAKRS-----SEQQRRALAEELAVQVGIRPEYLDRLPHA 142
Cdd:COG1129 319 RSPRDAIRAgIAY---VPedrkgeGLVLDLSIRENITLA-SLDRLSrggllDRRRERALAEEYIKRLRIKTPSPEQPVGN 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 143 FSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENhGLTYVLISHNVSVIRHMSDRVAVMYLGQIV 222
Cdd:COG1129 395 LSGGNQQKVVLAKWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE-GKAVIVISSELPELLGLSDRILVMREGRIV 473
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
3-230 |
1.61e-25 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 105.88 E-value: 1.61e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 3 DTLLTLRDVHInfparknwlgKTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQ-------YIR 75
Cdd:COG3845 255 EVVLEVENLSV----------RDDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSirldgedITG 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 76 SGSQRIMQM----VFQDPLSS-LNPRLPVW------RIITEPL----WIAKRsseqQRRALAEELAVQVGIRPEYLDRLP 140
Cdd:COG3845 325 LSPRERRRLgvayIPEDRLGRgLVPDMSVAenlilgRYRRPPFsrggFLDRK----AIRAFAEELIEEFDVRTPGPDTPA 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 141 HAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENhGLTYVLISHNVSVIRHMSDRVAVMYLGQ 220
Cdd:COG3845 401 RSLSGGNQQKVILARELSRDPKLLIAAQPTRGLDVGAIEFIHQRLLELRDA-GAAVLLISEDLDEILALSDRIAVMYEGR 479
|
250
....*....|
gi 16129442 221 IVELGDAQQV 230
Cdd:COG3845 480 IVGEVPAAEA 489
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
27-203 |
2.00e-25 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 101.39 E-value: 2.00e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 27 EHVHAI-NGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGsQRIMQM---------------VFQDPL 90
Cdd:PRK10584 20 EHELSIlTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVG-QPLHQMdeearaklrakhvgfVFQSFM 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 91 ssLNPRLPVWRIITEPLwIAKRSSEQQRRALAEELAVQVGIrPEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPT 170
Cdd:PRK10584 99 --LIPTLNALENVELPA-LLRGESSRQSRNGAKALLEQLGL-GKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPT 174
|
170 180 190
....*....|....*....|....*....|...
gi 16129442 171 SALDISVQAQILNLLVTLQENHGLTYVLISHNV 203
Cdd:PRK10584 175 GNLDRQTGDKIADLLFSLNREHGTTLILVTHDL 207
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
9-228 |
2.11e-25 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 105.53 E-value: 2.11e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 9 RDVHINFPARKNwLGK---TTEHVHA-------INGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGS 78
Cdd:COG0488 299 KTVEIRFPPPER-LGKkvlELEGLSKsygdktlLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGT-VKLGE 376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 79 QriMQMVF--QDpLSSLNPRLPVWRIITEplwIAKRSSEQQRRALAEELavqvGIRPEYLDRLPHAFSGGQRQRIAIARA 156
Cdd:COG0488 377 T--VKIGYfdQH-QEELDPDKTVLDELRD---GAPGGTEQEVRGYLGRF----LFSGDDAFKPVGVLSGGEKARLALAKL 446
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16129442 157 LSSQPDVIVLDEPTSALDI-SVQAqilnLLVTLQENHGlTYVLISHNvsviRHMSDRVAvmylGQIVELGDAQ 228
Cdd:COG0488 447 LLSPPNVLLLDEPTNHLDIeTLEA----LEEALDDFPG-TVLLVSHD----RYFLDRVA----TRILEFEDGG 506
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
24-232 |
2.79e-25 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 102.39 E-value: 2.79e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 24 KTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYI------RSGSQRIMQ---------MVFQD 88
Cdd:PRK13645 19 KTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIvgdyaiPANLKKIKEvkrlrkeigLVFQF 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 89 PLSSLNPRLPVWRIITEPLWIAKRSSEQQRRAlaEELAVQVGIRPEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDE 168
Cdd:PRK13645 99 PEYQLFQETIEKDIAFGPVNLGENKQEAYKKV--PELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDE 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16129442 169 PTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLT 232
Cdd:PRK13645 177 PTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFS 240
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
31-225 |
4.45e-25 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 105.04 E-value: 4.45e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 31 AINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYI----------RSGSQRIMQMVFQDPLSsLNprlpvw 100
Cdd:PRK13657 350 GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILidgtdirtvtRASLRRNIAVVFQDAGL-FN------ 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 101 RIITEPLWIAKR--SSEQQRRALAEELAVqvgirpEYLDRLPHAF-----------SGGQRQRIAIARALSSQPDVIVLD 167
Cdd:PRK13657 423 RSIEDNIRVGRPdaTDEEMRAAAERAQAH------DFIERKPDGYdtvvgergrqlSGGERQRLAIARALLKDPPILILD 496
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 16129442 168 EPTSALDISVQAQILNLLVTLQenHGLTYVLISHNVSVIRHmSDRVAVMYLGQIVELG 225
Cdd:PRK13657 497 EATSALDVETEAKVKAALDELM--KGRTTFIIAHRLSTVRN-ADRILVFDNGRVVESG 551
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
32-231 |
7.06e-25 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 104.44 E-value: 7.06e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 32 INGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQrimqmvfqdPLSSLNPR--------LPvwrii 103
Cdd:COG4618 348 LRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGS-VRLDGA---------DLSQWDREelgrhigyLP----- 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 104 teplwiakrsseqQRRAL-----AE--------------ELAVQVGIRpEYLDRLP-----------HAFSGGQRQRIAI 153
Cdd:COG4618 413 -------------QDVELfdgtiAEniarfgdadpekvvAAAKLAGVH-EMILRLPdgydtrigeggARLSGGQRQRIGL 478
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16129442 154 ARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQEnHGLTYVLISHNVSVIRHMsDRVAVMYLGQIVELGDAQQVL 231
Cdd:COG4618 479 ARALYGDPRLVVLDEPNSNLDDEGEAALAAAIRALKA-RGATVVVITHRPSLLAAV-DKLLVLRDGRVQAFGPRDEVL 554
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
1-225 |
9.98e-25 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 100.64 E-value: 9.98e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 1 MSDTLLTLRDVHINFPARKnwlgkttehVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQP---SHGQYIRSG 77
Cdd:PRK13640 1 MKDNIVEFKHVSFTYPDSK---------KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPddnPNSKITVDG 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 78 ---SQRIM-------QMVFQDPLSSL--------------N---PRLPVWRIIteplwiakrsseqqRRALAeelavQVG 130
Cdd:PRK13640 72 itlTAKTVwdirekvGIVFQNPDNQFvgatvgddvafgleNravPRPEMIKIV--------------RDVLA-----DVG 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 131 IRpEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIrHMS 210
Cdd:PRK13640 133 ML-DYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEA-NMA 210
|
250
....*....|....*
gi 16129442 211 DRVAVMYLGQIVELG 225
Cdd:PRK13640 211 DQVLVLDDGKLLAQG 225
|
|
| NHLM_micro_ABC1 |
TIGR03796 |
NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein; This protein describes ... |
32-242 |
1.58e-24 |
|
NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein; This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin. [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]
Pssm-ID: 274788 [Multi-domain] Cd Length: 710 Bit Score: 103.48 E-value: 1.58e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 32 INGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQR--IMQMVFQDPLSSLNPRL-----PVWRIIT 104
Cdd:TIGR03796 495 IENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPReeIPREVLANSVAMVDQDIflfegTVRDNLT 574
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 105 epLWIAKRSSEQQRRALAE-ELAVQVGIRP-EYLDRLPHA---FSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQA 179
Cdd:TIGR03796 575 --LWDPTIPDADLVRACKDaAIHDVITSRPgGYDAELAEGganLSGGQRQRLEIARALVRNPSILILDEATSALDPETEK 652
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16129442 180 QIL-NLlvtlqENHGLTYVLISHNVSVIRHmSDRVAVMYLGQIVELGDAQQVLTAPAhPYTRLL 242
Cdd:TIGR03796 653 IIDdNL-----RRRGCTCIIVAHRLSTIRD-CDEIIVLERGKVVQRGTHEELWAVGG-AYARLI 709
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
26-222 |
1.69e-24 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 98.94 E-value: 1.69e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 26 TEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQY----IRSGSQRI-----MQMVFQDPlSSLNPR 96
Cdd:cd03267 31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVrvagLVPWKRRKkflrrIGVVFGQK-TQLWWD 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 97 LPV---WRIITEPLWIAKRSSEQQRRALAEELAVQvgirpEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSAL 173
Cdd:cd03267 110 LPVidsFYLLAAIYDLPPARFKKRLDELSELLDLE-----ELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGL 184
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 16129442 174 DISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIV 222
Cdd:cd03267 185 DVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLL 233
|
|
| urea_trans_UrtE |
TIGR03410 |
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC ... |
30-226 |
1.86e-24 |
|
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274567 [Multi-domain] Cd Length: 230 Bit Score: 98.75 E-value: 1.86e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 30 HAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQRIM------------------QMVFqdpls 91
Cdd:TIGR03410 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGS-IRLDGEDITklppheraragiayvpqgREIF----- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 92 slnPRLPVWRIITEPLWIAKRSSeqqrRALAEELAVQVGIRPEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTS 171
Cdd:TIGR03410 88 ---PRLTVEENLLTGLAALPRRS----RKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTE 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 16129442 172 ALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGD 226
Cdd:TIGR03410 161 GIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGA 215
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
5-232 |
2.21e-24 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 102.98 E-value: 2.21e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 5 LLTLRDVHINFPARknwlgktteHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSG------- 77
Cdd:PRK11160 338 SLTLNNVSFTYPDQ---------PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGqpiadys 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 78 -----------SQRIMqmVFQDPLSslnprlpvwriitEPLWIAK-RSSEQQrraLAEELAvQVGIR-----PEYLD--- 137
Cdd:PRK11160 409 eaalrqaisvvSQRVH--LFSATLR-------------DNLLLAApNASDEA---LIEVLQ-QVGLEklledDKGLNawl 469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 138 ----RlphAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHglTYVLISHNVSVIRHMsDRV 213
Cdd:PRK11160 470 geggR---QLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNK--TVLMITHRLTGLEQF-DRI 543
|
250
....*....|....*....
gi 16129442 214 AVMYLGQIVELGDAQQVLT 232
Cdd:PRK11160 544 CVMDNGQIIEQGTHQELLA 562
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
31-216 |
2.78e-24 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 102.36 E-value: 2.78e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 31 AINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQrimqmvfqdPLSSLNPRlpVWR--------- 101
Cdd:TIGR02857 337 ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGS-IAVNGV---------PLADADAD--SWRdqiawvpqh 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 102 ------IITEPLWIAKR--SSEQQRRAL-AEELAVQVGIRPEYLDRL----PHAFSGGQRQRIAIARALSSQPDVIVLDE 168
Cdd:TIGR02857 405 pflfagTIAENIRLARPdaSDAEIREALeRAGLDEFVAALPQGLDTPigegGAGLSGGQAQRLALARAFLRDAPLLLLDE 484
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 16129442 169 PTSALDISVQAQILNLLVTLQENHglTYVLISHNVSVIRHMsDRVAVM 216
Cdd:TIGR02857 485 PTAHLDAETEAEVLEALRALAQGR--TVLLVTHRLALAALA-DRIVVL 529
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
31-207 |
2.96e-24 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 96.92 E-value: 2.96e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 31 AINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQRIMQMVFQdplSSLNPRLP--VWRIITEPLW 108
Cdd:NF040873 7 VLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTVRRAGGARVAYVPQR---SEVPDSLPltVRDLVAMGRW 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 109 ----IAKRSSEQQRRALAEELAvQVGIRpEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNL 184
Cdd:NF040873 84 arrgLWRRLTRDDRAAVDDALE-RVGLA-DLAGRQLGELSGGQRQRALLAQGLAQEADLLLLDEPTTGLDAESRERIIAL 161
|
170 180
....*....|....*....|...
gi 16129442 185 LVTLQENhGLTYVLISHNVSVIR 207
Cdd:NF040873 162 LAEEHAR-GATVVVVTHDLELVR 183
|
|
| NHLM_micro_ABC2 |
TIGR03797 |
NHLM bacteriocin system ABC transporter, ATP-binding protein; Members of this protein family ... |
33-234 |
4.13e-24 |
|
NHLM bacteriocin system ABC transporter, ATP-binding protein; Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes. [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]
Pssm-ID: 274789 [Multi-domain] Cd Length: 686 Bit Score: 102.34 E-value: 4.13e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 33 NGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyirsgsqrimqmVFQD--PLSSLNPR---------LPVWR 101
Cdd:TIGR03797 470 DDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGS------------VFYDgqDLAGLDVQavrrqlgvvLQNGR 537
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 102 IITEPLWIAKRSSEQQRRALAEELAVQVGIRpEYLDRLP---H--------AFSGGQRQRIAIARALSSQPDVIVLDEPT 170
Cdd:TIGR03797 538 LMSGSIFENIAGGAPLTLDEAWEAARMAGLA-EDIRAMPmgmHtvisegggTLSGGQRQRLLIARALVRKPRILLFDEAT 616
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16129442 171 SALDISVQAQILNLLVTLQenhgLTYVLISHNVSVIRHmSDRVAVMYLGQIVELGDAQQVLTAP 234
Cdd:TIGR03797 617 SALDNRTQAIVSESLERLK----VTRIVIAHRLSTIRN-ADRIYVLDAGRVVQQGTYDELMARE 675
|
|
| type_I_sec_PrtD |
TIGR01842 |
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in ... |
32-233 |
6.58e-24 |
|
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 200134 [Multi-domain] Cd Length: 544 Bit Score: 101.27 E-value: 6.58e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 32 INGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQRIMQMVFQDplssLNPR---LPvWRIITEPLW 108
Cdd:TIGR01842 334 LRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGS-VRLDGADLKQWDRET----FGKHigyLP-QDVELFPGT 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 109 IAKRSSEQQRRALAE---ELAVQVGIRpEYLDRLPHAF-----------SGGQRQRIAIARALSSQPDVIVLDEPTSALD 174
Cdd:TIGR01842 408 VAENIARFGENADPEkiiEAAKLAGVH-ELILRLPDGYdtvigpggatlSGGQRQRIALARALYGDPKLVVLDEPNSNLD 486
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 16129442 175 ISVQAQILNLLVTLQEnHGLTYVLISHNVSVIrHMSDRVAVMYLGQIVELGDAQQVLTA 233
Cdd:TIGR01842 487 EEGEQALANAIKALKA-RGITVVVITHRPSLL-GCVDKILVLQDGRIARFGERDEVLAK 543
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
31-225 |
6.62e-24 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 96.79 E-value: 6.62e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 31 AINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQRI-----------MQMVFQDPL-------SS 92
Cdd:cd03244 19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS-ILIDGVDIskiglhdlrsrISIIPQDPVlfsgtirSN 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 93 LNPrlpvwriiteplwIAKRSSEQQRRALAeelavQVGIRpEYLDRLPHA-----------FSGGQRQRIAIARALSSQP 161
Cdd:cd03244 98 LDP-------------FGEYSDEELWQALE-----RVGLK-EFVESLPGGldtvveeggenLSVGQRQLLCLARALLRKS 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16129442 162 DVIVLDEPTSALDISVQAQILNllvTLQEN-HGLTYVLISHNVSVIRHmSDRVAVMYLGQIVELG 225
Cdd:cd03244 159 KILVLDEATASVDPETDALIQK---TIREAfKDCTVLTIAHRLDTIID-SDRILVLDKGRVVEFD 219
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
35-234 |
7.58e-24 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 98.36 E-value: 7.58e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 35 IDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQ--------------RIMQMVFQDPLSSLNPRLPVW 100
Cdd:PRK13641 26 ISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHitpetgnknlkklrKKVSLVFQFPEAQLFENTVLK 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 101 RIITEPLWIAkrSSEQQRRALAEELAVQVGIRPEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQ 180
Cdd:PRK13641 106 DVEFGPKNFG--FSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKE 183
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 16129442 181 ILNLLVTLQENhGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTAP 234
Cdd:PRK13641 184 MMQLFKDYQKA-GHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSDK 236
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
20-246 |
8.81e-24 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 99.39 E-value: 8.81e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 20 NWLGKTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGqYIRSGSQRIMQM---------VFQDpl 90
Cdd:PRK10851 6 ANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSG-HIRFHGTDVSRLhardrkvgfVFQH-- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 91 SSLNPRLPVWRIITEPLWIAKRSSEQQRRALAEELA-----VQVGirpEYLDRLPHAFSGGQRQRIAIARALSSQPDVIV 165
Cdd:PRK10851 83 YALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTqllemVQLA---HLADRYPAQLSGGQKQRVALARALAVEPQILL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 166 LDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTAPAhpyTRLLLDS 245
Cdd:PRK10851 160 LDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPA---TRFVLEF 236
|
.
gi 16129442 246 L 246
Cdd:PRK10851 237 M 237
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
31-203 |
9.57e-24 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 97.46 E-value: 9.57e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 31 AINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQRIMQ------MVFQDplSSLNPRLPVWRIIT 104
Cdd:PRK11248 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGS-ITLDGKPVEGpgaergVVFQN--EGLLPWRNVQDNVA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 105 EPLWIAKRSSEQqRRALAEELAVQVGIRpEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNL 184
Cdd:PRK11248 93 FGLQLAGVEKMQ-RLEIAHQMLKKVGLE-GAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTL 170
|
170
....*....|....*....
gi 16129442 185 LVTLQENHGLTYVLISHNV 203
Cdd:PRK11248 171 LLKLWQETGKQVLLITHDI 189
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
4-216 |
9.68e-24 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 96.73 E-value: 9.68e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 4 TLLTLRDVHINFparknwlgktTEH------VHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQ-YIRS 76
Cdd:COG4778 3 TLLEVENLSKTF----------TLHlqggkrLPVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSiLVRH 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 77 GSQRImQMVFQDP-----------------LSSLnPRLPVWRIITEPLwIAKRSSEQQRRALAEELAVQVGIrPEYLDRL 139
Cdd:COG4778 73 DGGWV-DLAQASPreilalrrrtigyvsqfLRVI-PRVSALDVVAEPL-LERGVDREEARARARELLARLNL-PERLWDL 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16129442 140 PHA-FSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENhGLTYVLISHNVSVIRHMSDRVAVM 216
Cdd:COG4778 149 PPAtFSGGEQQRVNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEAKAR-GTAIIGIFHDEEVREAVADRVVDV 225
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
5-234 |
9.82e-24 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 101.34 E-value: 9.82e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 5 LLTLRDVHINFPARKNwlgkttehVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGsQRIMQ- 83
Cdd:TIGR00958 478 LIEFQDVSFSYPNRPD--------VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDG-VPLVQy 548
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 84 ----------MVFQDPLSSlnpRLPVWRIITEPLwiaKRSSEQQRRALAEELAVQvgirpEYLDRLPHAF---------- 143
Cdd:TIGR00958 549 dhhylhrqvaLVGQEPVLF---SGSVRENIAYGL---TDTPDEEIMAAAKAANAH-----DFIMEFPNGYdtevgekgsq 617
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 144 -SGGQRQRIAIARALSSQPDVIVLDEPTSALDisvqAQILNLLVTLQENHGLTYVLISHNVSVIRHmSDRVAVMYLGQIV 222
Cdd:TIGR00958 618 lSGGQKQRIAIARALVRKPRVLILDEATSALD----AECEQLLQESRSRASRTVLLIAHRLSTVER-ADQILVLKKGSVV 692
|
250
....*....|..
gi 16129442 223 ELGDAQQVLTAP 234
Cdd:TIGR00958 693 EMGTHKQLMEDQ 704
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
6-234 |
1.88e-23 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 99.15 E-value: 1.88e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 6 LTLRDVHINFparknwlGKTTehvhAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYI----------- 74
Cdd:PRK09536 4 IDVSDLSVEF-------GDTT----VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLvagddvealsa 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 75 RSGSQRIMQmVFQDplSSLNPRLPVWRII----TEPLWIAKRSSEQQRRALAEELAvQVGIrPEYLDRLPHAFSGGQRQR 150
Cdd:PRK09536 73 RAASRRVAS-VPQD--TSLSFEFDVRQVVemgrTPHRSRFDTWTETDRAAVERAME-RTGV-AQFADRPVTSLSGGERQR 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 151 IAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENhGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQV 230
Cdd:PRK09536 148 VLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDD-GKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADV 226
|
....
gi 16129442 231 LTAP 234
Cdd:PRK09536 227 LTAD 230
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
28-213 |
1.92e-23 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 96.04 E-value: 1.92e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 28 HVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQ------------RIMQMVFQDPLSSLNP 95
Cdd:PRK11629 21 QTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPmsklssaakaelRNQKLGFIYQFHHLLP 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 96 RLPVWRIITEPLWIA-KRSSEQQRRALaeELAVQVGIRPEYLDRlPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALD 174
Cdd:PRK11629 101 DFTALENVAMPLLIGkKKPAEINSRAL--EMLAAVGLEHRANHR-PSELSGGERQRVAIARALVNNPRLVLADEPTGNLD 177
|
170 180 190
....*....|....*....|....*....|....*....
gi 16129442 175 ISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRV 213
Cdd:PRK11629 178 ARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQL 216
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
6-222 |
3.62e-23 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 95.92 E-value: 3.62e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 6 LTLRDVHINFPArknwlGKTTEhVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQRIMQM- 84
Cdd:COG1101 2 LELKNLSKTFNP-----GTVNE-KRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGS-ILIDGKDVTKLp 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 85 ----------VFQDPLSSLNPRLpvwrIITEPLWIA---------KRSSEQQRRALAEELAVQVGIRPEylDRLpHA--- 142
Cdd:COG1101 75 eykrakyigrVFQDPMMGTAPSM----TIEENLALAyrrgkrrglRRGLTKKRRELFRELLATLGLGLE--NRL-DTkvg 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 143 -FSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNvsvIRH---MSDRVAVMYL 218
Cdd:COG1101 148 lLSGGQRQALSLLMATLTKPKLLLLDEHTAALDPKTAALVLELTEKIVEENNLTTLMVTHN---MEQaldYGNRLIMMHE 224
|
....
gi 16129442 219 GQIV 222
Cdd:COG1101 225 GRII 228
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
30-222 |
6.89e-23 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 94.17 E-value: 6.89e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 30 HAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGS-------------QRIMQMVFQDplSSLNPR 96
Cdd:PRK10908 16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHditrlknrevpflRRQIGMIFQD--HHLLMD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 97 LPVWRIITEPLWIAKRSSEQQRRALAEELAvQVGIrpeyLDR---LPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSAL 173
Cdd:PRK10908 94 RTVYDNVAIPLIIAGASGDDIRRRVSAALD-KVGL----LDKaknFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNL 168
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 16129442 174 DISVQAQILNLLVTLQENhGLTYVLISHNVSVIRHMSDRVAVMYLGQIV 222
Cdd:PRK10908 169 DDALSEGILRLFEEFNRV-GVTVLMATHDIGLISRRSYRMLTLSDGHLH 216
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
27-225 |
9.92e-23 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 93.75 E-value: 9.92e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 27 EHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGsqRIMQMVfqDPLSSLNPRLPVWR--IIT 104
Cdd:cd03220 33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG--RVSSLL--GLGGGFNPELTGREniYLN 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 105 EPLWIAKRSSEQQRRALAEELAvQVGirpEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNL 184
Cdd:cd03220 109 GRLLGLSRKEIDEKIDEIIEFS-ELG---DFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRR 184
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 16129442 185 LVTLQENhGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELG 225
Cdd:cd03220 185 LRELLKQ-GKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
3-208 |
1.37e-22 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 97.57 E-value: 1.37e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 3 DTLLTLRDVHINFPArknwlGKTTehvhaINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQRIM 82
Cdd:COG4178 360 DGALALEDLTLRTPD-----GRPL-----LEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLWPYGSGRIARPAGARVL 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 83 qMVFQDP---LSSLnpRlpvwRIITEPLWIAKRSSEQQRRALAeelavQVGIrPEYLDRL------PHAFSGGQRQRIAI 153
Cdd:COG4178 430 -FLPQRPylpLGTL--R----EALLYPATAEAFSDAELREALE-----AVGL-GHLAERLdeeadwDQVLSLGEQQRLAF 496
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 16129442 154 ARALSSQPDVIVLDEPTSALDISVQAQILNLLvtLQENHGLTYVLISHNVSVIRH 208
Cdd:COG4178 497 ARLLLHKPDWLFLDEATSALDEENEAALYQLL--REELPGTTVISVGHRSTLAAF 549
|
|
| oligo_HPY |
pfam08352 |
Oligopeptide/dipeptide transporter, C-terminal region; This family features a region found ... |
222-287 |
1.55e-22 |
|
Oligopeptide/dipeptide transporter, C-terminal region; This family features a region found towards the C-terminus of oligopeptide ABC transporter ATP binding proteins, immediately following the ATP-binding domain (pfam00005). All characterized members appear able to be involved in the transport of oligopeptides or dipeptides. Some are important for sporulation or antibiotic resistance. Some dipeptide transporters also act on the heme precursor delta-aminolevulinic acid.
Pssm-ID: 400588 [Multi-domain] Cd Length: 65 Bit Score: 88.61 E-value: 1.55e-22
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16129442 222 VELGDAQQVLTAPAHPYTRLLLDSLPAIDKPLeEEWALRKTDLPGNRTLPQGCFFYERCPLATHGC 287
Cdd:pfam08352 1 VEEGPTDDILENPLHPYTRALLNSVPRLDPPK-RPLYTIPGNVPSLLELPEGCPFAPRCPFATEEC 65
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
30-247 |
1.91e-22 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 94.42 E-value: 1.91e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 30 HAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQRIMQ-----------MVFQDP----LSSln 94
Cdd:PRK13647 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGR-VKVMGREVNAenekwvrskvgLVFQDPddqvFSS-- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 95 prlPVWRIIT-EPLWIAKRSSEQQRRAlaEELAVQVGIRpEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSAL 173
Cdd:PRK13647 96 ---TVWDDVAfGPVNMGLDKDEVERRV--EEALKAVRMW-DFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYL 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 174 DISVQAQILNLLVTLQeNHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGD----------AQQVLTAPA-----HPY 238
Cdd:PRK13647 170 DPRGQETLMEILDRLH-NQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDkslltdedivEQAGLRLPLvaqifEDL 248
|
....*....
gi 16129442 239 TRLLLDSLP 247
Cdd:PRK13647 249 PELGQSKLP 257
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
32-214 |
2.19e-22 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 90.59 E-value: 2.19e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 32 INGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGsqrimqmvfqdplsslnprlpvwriiteplwiak 111
Cdd:cd03221 16 LKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGS---------------------------------- 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 112 rsseqqrralaeelavqvGIRPEYLDRLphafSGGQRQRIAIARALSSQPDVIVLDEPTSALDI-SVQAqilnLLVTLQE 190
Cdd:cd03221 62 ------------------TVKIGYFEQL----SGGEKMRLALAKLLLENPNLLLLDEPTNHLDLeSIEA----LEEALKE 115
|
170 180
....*....|....*....|....
gi 16129442 191 NHGlTYVLISHNvsviRHMSDRVA 214
Cdd:cd03221 116 YPG-TVILVSHD----RYFLDQVA 134
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
21-216 |
2.32e-22 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 92.15 E-value: 2.32e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 21 WLGKTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSG-----SQR--IMQMVFQDplssl 93
Cdd:cd03250 10 WDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGsiayvSQEpwIQNGTIRE----- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 94 NprlpvwrII-TEPLwiakrssEQQR-----RALAeelavqvgIRPEyLDRLPH-----------AFSGGQRQRIAIARA 156
Cdd:cd03250 85 N-------ILfGKPF-------DEERyekviKACA--------LEPD-LEILPDgdlteigekgiNLSGGQKQRISLARA 141
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 157 LSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHmSDRVAVM 216
Cdd:cd03250 142 VYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQIVVL 200
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
22-230 |
9.27e-22 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 95.24 E-value: 9.27e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 22 LGKTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSG-----------SQRIMQMVFQ--- 87
Cdd:PRK09700 11 IGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNinynkldhklaAQLGIGIIYQels 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 88 --DPLSSLNpRLPVWRIITEPLWIAKRSSEQQRRALAEELAVQVGIRPEyLDRLPHAFSGGQRQRIAIARALSSQPDVIV 165
Cdd:PRK09700 91 viDELTVLE-NLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVD-LDEKVANLSISHKQMLEIAKTLMLDAKVII 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16129442 166 LDEPTSALdisVQAQILNLLVTLQE--NHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQV 230
Cdd:PRK09700 169 MDEPTSSL---TNKEVDYLFLIMNQlrKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
19-226 |
1.14e-21 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 92.84 E-value: 1.14e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 19 KNWLGKTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQ-----YI----RSGSQRIMQMVF-QD 88
Cdd:COG4586 25 KGLFRREYREVEAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEvrvlgYVpfkrRKEFARRIGVVFgQR 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 89 plSSLNPRLPVWriitEPLWIAK---RSSEQQRRALAEELAVQVGIRpEYLDR----LphafSGGQRQRIAIARALSSQP 161
Cdd:COG4586 105 --SQLWWDLPAI----DSFRLLKaiyRIPDAEYKKRLDELVELLDLG-ELLDTpvrqL----SLGQRMRCELAAALLHRP 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16129442 162 DVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGD 226
Cdd:COG4586 174 KILFLDEPTIGLDVVSKEAIREFLKEYNRERGTTILLTSHDMDDIEALCDRVIVIDHGRIIYDGS 238
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
30-235 |
1.14e-21 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 91.07 E-value: 1.14e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 30 HAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQRIMQMVF------------QDPlsSLNPRL 97
Cdd:cd03218 14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGK-ILLDGQDITKLPMhkrarlgigylpQEA--SIFRKL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 98 PVWRIITEPLWIAKRSSEQQRR---ALAEELAVQvgirpEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALD 174
Cdd:cd03218 91 TVEENILAVLEIRGLSKKEREEkleELLEEFHIT-----HLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVD 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16129442 175 -ISVQaQILNLLVTLQENhGLTyVLIS-HNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTAPA 235
Cdd:cd03218 166 pIAVQ-DIQKIIKILKDR-GIG-VLITdHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANEL 225
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
29-223 |
1.19e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 92.08 E-value: 1.19e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 29 VHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQ----------RIMQMVFQDPLSSLnprlp 98
Cdd:PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELltaenvwnlrRKIGMVFQNPDNQF----- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 99 VWRIITEPLWIAKRSS-----EQQRRALAEELAVQVgirPEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSAL 173
Cdd:PRK13642 95 VGATVEDDVAFGMENQgipreEMIKRVDEALLAVNM---LDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSML 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 16129442 174 DISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHmSDRVAVMYLGQIVE 223
Cdd:PRK13642 172 DPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAAS-SDRILVMKAGEIIK 220
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
5-222 |
1.58e-21 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 94.79 E-value: 1.58e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 5 LLTLRDVHINFPARKnwlgkttEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYiRSGSQRIMQM 84
Cdd:PRK10535 4 LLELKDIRRSYPSGE-------EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTY-RVAGQDVATL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 85 VfQDPLSSLN--------------PRLPVWRIITEPLWIAKrSSEQQRRALAEELAVQVGIRpEYLDRLPHAFSGGQRQR 150
Cdd:PRK10535 76 D-ADALAQLRrehfgfifqryhllSHLTAAQNVEVPAVYAG-LERKQRLLRAQELLQRLGLE-DRVEYQPSQLSGGQQQR 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16129442 151 IAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQEnHGLTYVLISHNVSVIRHmSDRVAVMYLGQIV 222
Cdd:PRK10535 153 VSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD-RGHTVIIVTHDPQVAAQ-AERVIEIRDGEIV 222
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
31-231 |
2.81e-21 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 93.93 E-value: 2.81e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 31 AINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSG------------------SQRIMqmVFQDPLSS 92
Cdd:PRK11176 358 ALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGhdlrdytlaslrnqvalvSQNVH--LFNDTIAN 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 93 lNprlpvwriiteplwIAKRSSEQQRRALAEElAVQVGIRPEYLDRLPHAF-----------SGGQRQRIAIARALSSQP 161
Cdd:PRK11176 436 -N--------------IAYARTEQYSREQIEE-AARMAYAMDFINKMDNGLdtvigengvllSGGQRQRIAIARALLRDS 499
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 162 DVIVLDEPTSALDISVQAQILNLLVTLQENHglTYVLISHNVSVIRHmSDRVAVMYLGQIVELGDAQQVL 231
Cdd:PRK11176 500 PILILDEATSALDTESERAIQAALDELQKNR--TSLVIAHRLSTIEK-ADEILVVEDGEIVERGTHAELL 566
|
|
| CP_lyasePhnL |
TIGR02324 |
phosphonate C-P lyase system protein PhnL; Members of this family are the PhnL protein of C-P ... |
22-213 |
2.88e-21 |
|
phosphonate C-P lyase system protein PhnL; Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Pssm-ID: 131377 [Multi-domain] Cd Length: 224 Bit Score: 89.76 E-value: 2.88e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 22 LGKT-TEHVH------AINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQ-YIRSG---------SQRIMQM 84
Cdd:TIGR02324 7 LSKTfTLHQQggvrlpVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRiLVRHEgawvdlaqaSPREVLE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 85 VFQDPLSSLN------PRLPVWRIITEPLwIAKRSSEQQRRALAEELAVQVGIrPEYLDRLPHA-FSGGQRQRIAIARAL 157
Cdd:TIGR02324 87 VRRKTIGYVSqflrviPRVSALEVVAEPL-LERGVPREAARARARELLARLNI-PERLWHLPPAtFSGGEQQRVNIARGF 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 16129442 158 SSQPDVIVLDEPTSALDISVQAQILNLLVTLQENhGLTYVLISHNVSVIRHMSDRV 213
Cdd:TIGR02324 165 IADYPILLLDEPTASLDAANRQVVVELIAEAKAR-GAALIGIFHDEEVRELVADRV 219
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
29-225 |
2.99e-21 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 89.65 E-value: 2.99e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 29 VHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQriMQMVFQDPLSSLnPR----LPVWRIIT 104
Cdd:cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKP--LDIAARNRIGYL-PEerglYPKMKVID 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 105 EPLWIA--KRSSEQQRRALAEELAVQVGIRpEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQIL 182
Cdd:cd03269 90 QLVYLAqlKGLKKEEARRRIDEWLERLELS-EYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLK 168
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 16129442 183 NLLVTLQENhGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELG 225
Cdd:cd03269 169 DVIRELARA-GKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
47-239 |
4.98e-21 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 90.54 E-value: 4.98e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 47 IVGESGCGKSTLAQLLMGMLQPSHGqYIRSGS-----------------QRIMQMVFQDPlsslNP-RLPVWRIITEPLW 108
Cdd:PRK14271 52 LMGPTGSGKTTFLRTLNRMNDKVSG-YRYSGDvllggrsifnyrdvlefRRRVGMLFQRP----NPfPMSIMDNVLAGVR 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 109 IAKRSSEQQRRALAEELAVQVGIRPEYLDRL---PHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLL 185
Cdd:PRK14271 127 AHKLVPRKEFRGVAQARLTEVGLWDAVKDRLsdsPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFI 206
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 16129442 186 VTLQENhgLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTAPAHPYT 239
Cdd:PRK14271 207 RSLADR--LTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPKHAET 258
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
38-215 |
5.17e-21 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 92.95 E-value: 5.17e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 38 QIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHG------------QYIRSGSqrimQMVFQDPLSSLNPRL---PVWRI 102
Cdd:PRK13409 361 EIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGevdpelkisykpQYIKPDY----DGTVEDLLRSITDDLgssYYKSE 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 103 ITEPLWIakrsseqqrralaEELavqvgirpeyLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQIL 182
Cdd:PRK13409 437 IIKPLQL-------------ERL----------LDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVA 493
|
170 180 190
....*....|....*....|....*....|...
gi 16129442 183 NLLVTLQENHGLTYVLISHNVSVIRHMSDRVAV 215
Cdd:PRK13409 494 KAIRRIAEEREATALVVDHDIYMIDYISDRLMV 526
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
35-249 |
6.13e-21 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 92.99 E-value: 6.13e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 35 IDLQIRRGETLGIVGESGCGKSTLAQLLMGMLqPSHGQyIRSGSQRIMQMVFQDPLSSL-----NPRLPVWRIITEPLWI 109
Cdd:PRK11174 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGS-LKINGIELRELDPESWRKHLswvgqNPQLPHGTLRDNVLLG 446
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 110 AKRSSEQQRRALAEELAVQvgirpEYLDRLPH-----------AFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQ 178
Cdd:PRK11174 447 NPDASDEQLQQALENAWVS-----EFLPLLPQgldtpigdqaaGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSE 521
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16129442 179 AQILNLLvtLQENHGLTYVLISHNVSVIRHMsDRVAVMYLGQIVELGDAQQVLTAPAhPYTRLLLDSLPAI 249
Cdd:PRK11174 522 QLVMQAL--NAASRRQTTLMVTHQLEDLAQW-DQIWVMQDGQIVQQGDYAELSQAGG-LFATLLAHRQEEI 588
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
32-240 |
6.54e-21 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 89.71 E-value: 6.54e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 32 INGIDLQIRRGETLGIVGESGCGKSTLAQLL--MGMLQPS---------HGQYIRSGS------QRIMQMVFQDP----- 89
Cdd:PRK14258 23 LEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLnrMNELESEvrvegrvefFNQNIYERRvnlnrlRRQVSMVHPKPnlfpm 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 90 -----------LSSLNPRLPVWRIITEPLWIAKRSSEQQRRalaeelavqvgIRPEYLDrlphaFSGGQRQRIAIARALS 158
Cdd:PRK14258 103 svydnvaygvkIVGWRPKLEIDDIVESALKDADLWDEIKHK-----------IHKSALD-----LSGGQQQRLCIARALA 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 159 SQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMY-----LGQIVELGDAQQVLTA 233
Cdd:PRK14258 167 VKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKgnenrIGQLVEFGLTKKIFNS 246
|
....*..
gi 16129442 234 PAHPYTR 240
Cdd:PRK14258 247 PHDSRTR 253
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
27-231 |
8.05e-21 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 92.58 E-value: 8.05e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 27 EHVH--------AINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPS------HGQYIRSGSQ----RIMQMVFQD 88
Cdd:COG5265 361 ENVSfgydperpILKGVSFEVPAGKTVAIVGPSGAGKSTLARLLFRFYDVTsgriliDGQDIRDVTQaslrAAIGIVPQD 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 89 PL---SSL--NprlpvwriiteplwIA---KRSSEQQRRALAEelAVQVGirpEYLDRLPHAF-----------SGGQRQ 149
Cdd:COG5265 441 TVlfnDTIayN--------------IAygrPDASEEEVEAAAR--AAQIH---DFIESLPDGYdtrvgerglklSGGEKQ 501
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 150 RIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHglTYVLISHNVSVIRHmSDRVAVMYLGQIVELGDAQQ 229
Cdd:COG5265 502 RVAIARTLLKNPPILIFDEATSALDSRTERAIQAALREVARGR--TTLVIAHRLSTIVD-ADEILVLEAGRIVERGTHAE 578
|
..
gi 16129442 230 VL 231
Cdd:COG5265 579 LL 580
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
1-235 |
8.42e-21 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 92.30 E-value: 8.42e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 1 MSDTLLTLRDVHINFPArknwlgkttehVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGML-------------Q 67
Cdd:PRK13549 1 MMEYLLEMKNITKTFGG-----------VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYphgtyegeiifegE 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 68 PSHGQYIRSGSQRIMQMVFQDplSSLNPRLPVWRII---TEPLwIAKRSSEQQRRALAEELAVQVGirpeyLDRLPHA-- 142
Cdd:PRK13549 70 ELQASNIRDTERAGIAIIHQE--LALVKELSVLENIflgNEIT-PGGIMDYDAMYLRAQKLLAQLK-----LDINPATpv 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 143 --FSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQeNHGLTYVLISHNVSVIRHMSDRVAVmylgq 220
Cdd:PRK13549 142 gnLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLK-AHGIACIYISHKLNEVKAISDTICV----- 215
|
250
....*....|....*
gi 16129442 221 iveLGDAQQVLTAPA 235
Cdd:PRK13549 216 ---IRDGRHIGTRPA 227
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
22-229 |
1.57e-20 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 88.92 E-value: 1.57e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 22 LGKTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQ-----PSHGQYIRSGSQRIMQM------------ 84
Cdd:PRK09984 10 LAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITgdksaGSHIELLGRTVQREGRLardirksrantg 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 85 -VFQDplSSLNPRLPVWRII------TEPLW---IAKRSSEQQRRALaeELAVQVGIRPEYLDRLPhAFSGGQRQRIAIA 154
Cdd:PRK09984 90 yIFQQ--FNLVNRLSVLENVligalgSTPFWrtcFSWFTREQKQRAL--QALTRVGMVHFAHQRVS-TLSGGQQQRVAIA 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16129442 155 RALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQ 229
Cdd:PRK09984 165 RALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQ 239
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
35-221 |
3.21e-20 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 90.50 E-value: 3.21e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 35 IDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYI--------RSGSQRIMQMVFQDP----LSSLNPRLPV-WR 101
Cdd:PRK15439 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMlngkeinaLSTAQRLARGLVYLPedrqSSGLYLDAPLaWN 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 102 II-----TEPLWIakrsSEQQRRALAEELAVQVGIRPEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDIS 176
Cdd:PRK15439 362 VCalthnRRGFWI----KPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVS 437
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 16129442 177 VQAQILNLLVTLQEnHGLTYVLISHNVSVIRHMSDRVAVMYLGQI 221
Cdd:PRK15439 438 ARNDIYQLIRSIAA-QNVAVLFISSDLEEIEQMADRVLVMHQGEI 481
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
32-233 |
4.77e-20 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 87.38 E-value: 4.77e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 32 INGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQrimqmvfqdPLSSLNPR--------LPVWRII 103
Cdd:PRK11231 18 LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGT-VFLGDK---------PISMLSSRqlarrlalLPQHHLT 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 104 TE----------------PLWiAKRSSEQQRRAlaeELAVQVGIRPEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLD 167
Cdd:PRK11231 88 PEgitvrelvaygrspwlSLW-GRLSAEDNARV---NQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLD 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16129442 168 EPTSALDISVQAQILNLLVTLQENhGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTA 233
Cdd:PRK11231 164 EPTTYLDINHQVELMRLMRELNTQ-GKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTP 228
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
32-231 |
5.71e-20 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 86.62 E-value: 5.71e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 32 INGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQRIMQM------------------VFQdplssl 93
Cdd:COG1137 19 VKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGR-IFLDGEDITHLpmhkrarlgigylpqeasIFR------ 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 94 npRLPVW---RIITEplwIAKRSSEQQRR---ALAEELAVQvGIRpeylDRLPHAFSGGQRQRIAIARALSSQPDVIVLD 167
Cdd:COG1137 92 --KLTVEdniLAVLE---LRKLSKKEREErleELLEEFGIT-HLR----KSKAYSLSGGERRRVEIARALATNPKFILLD 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 168 EPTSALD-ISVqAQILNLLVTLQEnHGLTyVLIS-HNV----SVIrhmsDRVAVMYLGQIVELGDAQQVL 231
Cdd:COG1137 162 EPFAGVDpIAV-ADIQKIIRHLKE-RGIG-VLITdHNVretlGIC----DRAYIISEGKVLAEGTPEEIL 224
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
39-215 |
6.48e-20 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 86.69 E-value: 6.48e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 39 IRRGETLGIVGESGCGKSTLAQLLMGMLQPSHG-------------QYIRSGSqrimQMVFQDPLSSLNPRL---PVWRI 102
Cdd:cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGdieieldtvsykpQYIKADY----EGTVRDLLSSITKDFythPYFKT 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 103 -ITEPLWIakrsseqqrralaEELavqvgirpeyLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQI 181
Cdd:cd03237 98 eIAKPLQI-------------EQI----------LDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMA 154
|
170 180 190
....*....|....*....|....*....|....
gi 16129442 182 LNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAV 215
Cdd:cd03237 155 SKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIV 188
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
24-228 |
1.09e-19 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 89.11 E-value: 1.09e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 24 KTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGML-------------QPSHGQYIRSGSQRIMQMVFQDpl 90
Cdd:TIGR02633 9 KTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYphgtwdgeiywsgSPLKASNIRDTERAGIVIIHQE-- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 91 SSLNPRLPVWRII------TEPLWIAKRSSEQQRralAEELAVQVGIRPEYLDRLPHAFSGGQRQRIAIARALSSQPDVI 164
Cdd:TIGR02633 87 LTLVPELSVAENIflgneiTLPGGRMAYNAMYLR---AKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLL 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16129442 165 VLDEPTSALDISVQAQILNLLVTLQEnHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQ 228
Cdd:TIGR02633 164 ILDEPSSSLTEKETEILLDIIRDLKA-HGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMS 226
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
32-225 |
1.12e-19 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 85.79 E-value: 1.12e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 32 INGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLqpsHGQYIRSG-------------SQRIMQMVFQDplSSLNPRLP 98
Cdd:cd03234 23 LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRV---EGGGTTSGqilfngqprkpdqFQKCVAYVRQD--DILLPGLT 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 99 VWRIIT--EPLWIAKRSSEQQRRALAEelavQVGIRPEYLDRLPHAF----SGGQRQRIAIARALSSQPDVIVLDEPTSA 172
Cdd:cd03234 98 VRETLTytAILRLPRKSSDAIRKKRVE----DVLLRDLALTRIGGNLvkgiSGGERRRVSIAVQLLWDPKVLILDEPTSG 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 16129442 173 LDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELG 225
Cdd:cd03234 174 LDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
32-231 |
1.36e-19 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 86.60 E-value: 1.36e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 32 INGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSG-----SQRIM-------QMVFQDPLSSLnprlpV 99
Cdd:PRK13638 17 LKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGkpldySKRGLlalrqqvATVFQDPEQQI-----F 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 100 WRIITEPLWIAKRS-----SEQQRRA-LAEELAVQVGIRPEYLDRLPHafsgGQRQRIAIARALSSQPDVIVLDEPTSAL 173
Cdd:PRK13638 92 YTDIDSDIAFSLRNlgvpeAEITRRVdEALTLVDAQHFRHQPIQCLSH----GQKKRVAIAGALVLQARYLLLDEPTAGL 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 174 DISVQAQILNLL--VTLQENHgltYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVL 231
Cdd:PRK13638 168 DPAGRTQMIAIIrrIVAQGNH---VIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVF 224
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
35-238 |
1.72e-19 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 87.24 E-value: 1.72e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 35 IDLQI-RRGETlGIVGESGCGKSTLAQLLMGMLQPSHGqYIRSGS---------------QRIMQMVFQDPlsslnpRL- 97
Cdd:PRK11144 17 VNLTLpAQGIT-AIFGRSGAGKTSLINAISGLTRPQKG-RIVLNGrvlfdaekgiclppeKRRIGYVFQDA------RLf 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 98 PVWRIITEPLWIAKRSSEQQRRALAEELavqvGIRPeYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISV 177
Cdd:PRK11144 89 PHYKVRGNLRYGMAKSMVAQFDKIVALL----GIEP-LLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16129442 178 QAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTAPA-HPY 238
Cdd:PRK11144 164 KRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSAmRPW 225
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
29-270 |
1.88e-19 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 86.32 E-value: 1.88e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 29 VHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRsgsqrimqmVFQDPLSS--------------LN 94
Cdd:COG4152 14 KTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGE-VL---------WDGEPLDPedrrrigylpeergLY 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 95 PRLPVWRIItepLWIAKR---SSEQQRRAlAEELAVQVGIrPEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTS 171
Cdd:COG4152 84 PKMKVGEQL---VYLARLkglSKAEAKRR-ADEWLERLGL-GDRANKKVEELSKGNQQKVQLIAALLHDPELLILDEPFS 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 172 ALD-ISVQAqILNLLVTLQENhGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTapAHPYTRLLLDSLPAID 250
Cdd:COG4152 159 GLDpVNVEL-LKDVIRELAAK-GTTVIFSSHQMELVEELCDRIVIINKGRKVLSGSVDEIRR--QFGRNTLRLEADGDAG 234
|
250 260
....*....|....*....|
gi 16129442 251 KpLEEEWALRKTDLPGNRTL 270
Cdd:COG4152 235 W-LRALPGVTVVEEDGDGAE 253
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
31-240 |
1.88e-19 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 85.99 E-value: 1.88e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 31 AINGIDLQIRRGETLGIVGESGCGKSTLAQLL--MGMLQPS---------HGQYIRSGS------QRIMQMVFQDPlssl 93
Cdd:PRK14243 25 AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFnrLNDLIPGfrvegkvtfHGKNLYAPDvdpvevRRRIGMVFQKP---- 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 94 NPrLPvwRIITEPLWIAKRSSEQQ--RRALAEELAVQVGIRPEYLDRLPH---AFSGGQRQRIAIARALSSQPDVIVLDE 168
Cdd:PRK14243 101 NP-FP--KSIYDNIAYGARINGYKgdMDELVERSLRQAALWDEVKDKLKQsglSLSGGQQQRLCIARAIAVQPEVILMDE 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 169 PTSALDISVQAQILNLLVTLQENHglTYVLISHNVSVIRHMSDRVAVM---------YLGQIVELGDAQQVLTAPAHPYT 239
Cdd:PRK14243 178 PCSALDPISTLRIEELMHELKEQY--TIIIVTHNMQQAARVSDMTAFFnveltegggRYGYLVEFDRTEKIFNSPQQQAT 255
|
.
gi 16129442 240 R 240
Cdd:PRK14243 256 R 256
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
9-221 |
1.95e-19 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 84.83 E-value: 1.95e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 9 RDVHINFPARKnwlgktteHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGS---------- 78
Cdd:cd03248 15 QNVTFAYPTRP--------DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKpisqyehkyl 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 79 QRIMQMVFQDP-LSSlnprlpvwRIITEPLWIAKRSSEQQRralAEELAVQVGIRpEYLDRLPHAF-----------SGG 146
Cdd:cd03248 87 HSKVSLVGQEPvLFA--------RSLQDNIAYGLQSCSFEC---VKEAAQKAHAH-SFISELASGYdtevgekgsqlSGG 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16129442 147 QRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHglTYVLISHNVSVIRHmSDRVAVMYLGQI 221
Cdd:cd03248 155 QKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERR--TVLVIAHRLSTVER-ADQILVLDGGRI 226
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
31-234 |
5.54e-19 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 84.27 E-value: 5.54e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 31 AINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSG-------SQRIMQM----VFQdplsslNPRLPV 99
Cdd:PRK11300 20 AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGqhieglpGHQIARMgvvrTFQ------HVRLFR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 100 WRIITEPLWIAK------------------RSSEQQRRALAEELAVQVGIRpEYLDRLPHAFSGGQRQRIAIARALSSQP 161
Cdd:PRK11300 94 EMTVIENLLVAQhqqlktglfsgllktpafRRAESEALDRAATWLERVGLL-EHANRQAGNLAYGQQRRLEIARCMVTQP 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16129442 162 DVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTAP 234
Cdd:PRK11300 173 EILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRNNP 245
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
38-215 |
9.10e-19 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 86.38 E-value: 9.10e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 38 QIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHG------------QYIRSGSQrimqMVFQDPLSSLNPRlpvwrIITE 105
Cdd:COG1245 362 EIREGEVLGIVGPNGIGKTTFAKILAGVLKPDEGevdedlkisykpQYISPDYD----GTVEEFLRSANTD-----DFGS 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 106 PLWIakrsseqqrralaEELAVQVGIRPeYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLL 185
Cdd:COG1245 433 SYYK-------------TEIIKPLGLEK-LLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAI 498
|
170 180 190
....*....|....*....|....*....|
gi 16129442 186 VTLQENHGLTYVLISHNVSVIRHMSDRVAV 215
Cdd:COG1245 499 RRFAENRGKTAMVVDHDIYLIDYISDRLMV 528
|
|
| sufC |
TIGR01978 |
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six ... |
6-241 |
9.93e-19 |
|
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic () or associated with the membrane (). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]
Pssm-ID: 273907 [Multi-domain] Cd Length: 243 Bit Score: 83.46 E-value: 9.93e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 6 LTLRDVHINfparknwlgktTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGmlqpsHGQY------IRSGSQ 79
Cdd:TIGR01978 1 LKIKDLHVS-----------VEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAG-----HPSYevtsgtILFKGQ 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 80 RIMQM------------VFQDPLSSlnPRLPVWRIITEPLwIAKRSSEQQ--------RRALAEELAVqVGIRPEYLDR- 138
Cdd:TIGR01978 65 DLLELepderaraglflAFQYPEEI--PGVSNLEFLRSAL-NARRSARGEepldlldfEKLLKEKLAL-LDMDEEFLNRs 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 139 LPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGlTYVLISHNVSVIRHMS-DRVAVMY 217
Cdd:TIGR01978 141 VNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDR-SFLIITHYQRLLNYIKpDYVHVLL 219
|
250 260
....*....|....*....|....
gi 16129442 218 LGQIVELGDAQQVLTAPAHPYTRL 241
Cdd:TIGR01978 220 DGRIVKSGDVELAKELEAKGYDWV 243
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
2-234 |
1.61e-18 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 83.30 E-value: 1.61e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 2 SDTLLTLRDVHINFParknwlGKTTEHvhainGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGsQRI 81
Cdd:PRK10575 8 SDTTFALRNVSFRVP------GRTLLH-----PLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDA-QPL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 82 MQM---VFQDPLSSLNPRLPVWRIIT--EPLWIAK--------RSSEQQRRALAEELAVqVGIRPeYLDRLPHAFSGGQR 148
Cdd:PRK10575 76 ESWsskAFARKVAYLPQQLPAAEGMTvrELVAIGRypwhgalgRFGAADREKVEEAISL-VGLKP-LAHRLVDSLSGGER 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 149 QRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQ 228
Cdd:PRK10575 154 QRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPA 233
|
....*.
gi 16129442 229 QVLTAP 234
Cdd:PRK10575 234 ELMRGE 239
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
32-227 |
2.18e-18 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 81.42 E-value: 2.18e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 32 INGIDLQIRRGETLGIVGESGCGKSTLAQLLMGM--LQPSHGQyIRSGSQRIMQ------------MVFQDPlsslnPRL 97
Cdd:cd03217 16 LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHpkYEVTEGE-ILFKGEDITDlppeerarlgifLAFQYP-----PEI 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 98 PvwriiteplwiakrsseqqrralaeelavqvGIR-PEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDIS 176
Cdd:cd03217 90 P-------------------------------GVKnADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDID 138
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 16129442 177 VQAQILNLLVTLQENhGLTYVLISHNVSVIRHM-SDRVAVMYLGQIVELGDA 227
Cdd:cd03217 139 ALRLVAEVINKLREE-GKSVLIITHYQRLLDYIkPDRVHVLYDGRIVKSGDK 189
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
32-216 |
5.26e-18 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 80.84 E-value: 5.26e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 32 INGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQRIMQMVFQDPLSSlnpRLPVWRIITEPlWIAK 111
Cdd:cd03290 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRN---RYSVAYAAQKP-WLLN 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 112 RSSE-----------QQRRALAEELAVQVGIrpeylDRLPHA-----------FSGGQRQRIAIARALSSQPDVIVLDEP 169
Cdd:cd03290 93 ATVEenitfgspfnkQRYKAVTDACSLQPDI-----DLLPFGdqteigerginLSGGQRQRICVARALYQNTNIVFLDDP 167
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 16129442 170 TSALDISVQAQILN--LLVTLQENHgLTYVLISHNVSVIRHmSDRVAVM 216
Cdd:cd03290 168 FSALDIHLSDHLMQegILKFLQDDK-RTLVLVTHKLQYLPH-ADWIIAM 214
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
22-231 |
7.47e-18 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 81.09 E-value: 7.47e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 22 LGKTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYI-----------RSGSQRIMQMVFQDPl 90
Cdd:PRK10895 9 LAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIiddedisllplHARARRGIGYLPQEA- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 91 sSLNPRLPVWRIITEPLWIAKRSSEQQRRALAEELAVQVGIrpEYL-DRLPHAFSGGQRQRIAIARALSSQPDVIVLDEP 169
Cdd:PRK10895 88 -SIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHI--EHLrDSMGQSLSGGERRRVEIARALAANPKFILLDEP 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16129442 170 TSALD-ISVqAQILNLLVTLQEnHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVL 231
Cdd:PRK10895 165 FAGVDpISV-IDIKRIIEHLRD-SGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEIL 225
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
24-223 |
1.07e-17 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 82.92 E-value: 1.07e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 24 KTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGmLQPsHGQY---------------IRSGSQR----IMQM 84
Cdd:NF040905 9 KTFPGVKALDDVNLSVREGEIHALCGENGAGKSTLMKVLSG-VYP-HGSYegeilfdgevcrfkdIRDSEALgiviIHQE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 85 VFQDPLSSlnprlpvwriITEPLWIakrSSEQQRRAL---------AEELAVQVGirpeyLDRLPHAFSG----GQRQRI 151
Cdd:NF040905 87 LALIPYLS----------IAENIFL---GNERAKRGVidwnetnrrARELLAKVG-----LDESPDTLVTdigvGKQQLV 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16129442 152 AIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQEnHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVE 223
Cdd:NF040905 149 EIAKALSKDVKLLILDEPTAALNEEDSAALLDLLLELKA-QGITSIIISHKLNEIRRVADSITVLRDGRTIE 219
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
2-211 |
1.18e-17 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 80.14 E-value: 1.18e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 2 SDTLLTLRDVHINFPARKnwlgkttehvhAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGS--- 78
Cdd:PRK10247 4 NSPLLQLQNVGYLAGDAK-----------ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEdis 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 79 ----QRIMQMV---FQDPlsSL-------NPRLPvWRIiteplwiakRSSEQQRRALAEELAvQVGIRPEYLDRLPHAFS 144
Cdd:PRK10247 73 tlkpEIYRQQVsycAQTP--TLfgdtvydNLIFP-WQI---------RNQQPDPAIFLDDLE-RFALPDTILTKNIAELS 139
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16129442 145 GGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSD 211
Cdd:PRK10247 140 GGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADK 206
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
35-244 |
1.31e-17 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 80.96 E-value: 1.31e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 35 IDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSG-------------SQRIMQMVFQDplSSLNPRLPVWR 101
Cdd:PRK11831 26 ISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGenipamsrsrlytVRKRMSMLFQS--GALFTDMNVFD 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 102 IITEPLWIAKRSSEQQRRALAEELAVQVGIRPEyLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQI 181
Cdd:PRK11831 104 NVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGA-AKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVL 182
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16129442 182 LNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQvLTAPAHPYTRLLLD 244
Cdd:PRK11831 183 VKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQA-LQANPDPRVRQFLD 244
|
|
| oligo_HPY |
TIGR01727 |
oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; This model ... |
220-305 |
1.69e-17 |
|
oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; This model represents a domain found in the C-terminal regions of oligopeptide ABC transporter ATP binding proteins, immediately following the ATP-binding domain (pfam00005). All characterized members appear able to be involved in the transport of oligopeptides or dipeptides. Some are important for sporulation or antibiotic resistance. Some dipeptide transporters also act on the heme precursor delta-aminolevulinic acid. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 213647 [Multi-domain] Cd Length: 87 Bit Score: 75.86 E-value: 1.69e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 220 QIVELGDAQQVLTAPAHPYTRLLLDSLPAIDKPLEeewalRKTDLPGN----RTLPQGCFFYERCPLATHGCEVRQSLAI 295
Cdd:TIGR01727 1 KIVETGPAEEIFKNPLHPYTKALLSAIPTIKKRDR-----KLISIPGEvpslINLPSGCRFYPRCPYAQDECRKEPPALV 75
|
90
....*....|.
gi 16129442 296 R-EDGRELRCW 305
Cdd:TIGR01727 76 EiAEGHRVACH 86
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
32-231 |
1.71e-17 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 83.07 E-value: 1.71e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 32 INGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQRIM--QMVFQDplSSLNPRLPVWRIITEPLWi 109
Cdd:TIGR00957 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVpqQAWIQN--DSLRENILFGKALNEKYY- 730
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 110 akRSSEQQRRALAEELAVQVGIRPEYLDRLPHaFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQIL-NLLVTL 188
Cdd:TIGR00957 731 --QQVLEACALLPDLEILPSGDRTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFeHVIGPE 807
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 16129442 189 QENHGLTYVLISHNVSVIRHMsDRVAVMYLGQIVELGDAQQVL 231
Cdd:TIGR00957 808 GVLKNKTRILVTHGISYLPQV-DVIIVMSGGKISEMGSYQELL 849
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
35-201 |
1.99e-17 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 77.96 E-value: 1.99e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 35 IDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQRIMqMVFQDPLsslnprLPVWRiiteplwiakrss 114
Cdd:cd03223 20 LSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLL-FLPQRPY------LPLGT------------- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 115 eqqrraLAEELavqvgIRPEYldrlpHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLvtlqENHGL 194
Cdd:cd03223 80 ------LREQL-----IYPWD-----DVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLL----KELGI 139
|
....*..
gi 16129442 195 TYVLISH 201
Cdd:cd03223 140 TVISVGH 146
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
22-217 |
2.15e-17 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 80.10 E-value: 2.15e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 22 LGKTTEHVHAINGIDLQ----IRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyirsgsqrimqmvFQDPlsslnprl 97
Cdd:cd03236 2 LEDEPVHRYGPNSFKLHrlpvPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGK-------------FDDP-------- 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 98 PVWRIITEplwiAKRSSEQQR--RALAEElAVQVGIRPEYLDRLPHAF-------------------------------- 143
Cdd:cd03236 61 PDWDEILD----EFRGSELQNyfTKLLEG-DVKVIVKPQYVDLIPKAVkgkvgellkkkdergkldelvdqlelrhvldr 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 144 -----SGGQRQRIAIARALSSQPDVIVLDEPTSALDISvqaQILNLLVTLQE--NHGLTYVLISHNVSVIRHMSDRVAVM 216
Cdd:cd03236 136 nidqlSGGELQRVAIAAALARDADFYFFDEPSSYLDIK---QRLNAARLIRElaEDDNYVLVVEHDLAVLDYLSDYIHCL 212
|
.
gi 16129442 217 Y 217
Cdd:cd03236 213 Y 213
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
4-213 |
2.73e-17 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 79.77 E-value: 2.73e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 4 TLLTLRDVHINFPARKnwlgkttehvhAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQRImQ 83
Cdd:PRK09544 3 SLVSLENVSVSFGQRR-----------VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRI-G 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 84 MVFQDplSSLNPRLPvwriITEPLWIAKRSSEQQRRALAEELAVQVGirpEYLDRLPHAFSGGQRQRIAIARALSSQPDV 163
Cdd:PRK09544 71 YVPQK--LYLDTTLP----LTVNRFLRLRPGTKKEDILPALKRVQAG---HLIDAPMQKLSGGETQRVLLARALLNRPQL 141
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 16129442 164 IVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRV 213
Cdd:PRK09544 142 LVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEV 191
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
35-233 |
3.20e-17 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 81.69 E-value: 3.20e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 35 IDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIR-------SGSQRIMQ----MVFQDPL---SSLNPRLPVW 100
Cdd:PRK10790 360 INLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGE-IRldgrplsSLSHSVLRqgvaMVQQDPVvlaDTFLANVTLG 438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 101 RIITEP-LWIAKRSSE--QQRRALAEELAVQVGirpEYLDRLphafSGGQRQRIAIARALSSQPDVIVLDEPTSALDISV 177
Cdd:PRK10790 439 RDISEEqVWQALETVQlaELARSLPDGLYTPLG---EQGNNL----SVGQKQLLALARVLVQTPQILILDEATANIDSGT 511
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 16129442 178 QAQILNLLVTLQENhgLTYVLISHNVSVIRHmSDRVAVMYLGQIVELGDAQQVLTA 233
Cdd:PRK10790 512 EQAIQQALAAVREH--TTLVVIAHRLSTIVE-ADTILVLHRGQAVEQGTHQQLLAA 564
|
|
| anch_rpt_ABC |
TIGR03771 |
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ... |
37-233 |
4.51e-17 |
|
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 163483 [Multi-domain] Cd Length: 223 Bit Score: 78.35 E-value: 4.51e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 37 LQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGS-------------QRiMQMVFQDPLSS----LNPRlpv 99
Cdd:TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGAspgkgwrhigyvpQR-HEFAWDFPISVahtvMSGR--- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 100 wriiTEPLWIAKRSSEQQRRALAEELAvQVGIRpEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQA 179
Cdd:TIGR03771 77 ----TGHIGWLRRPCVADFAAVRDALR-RVGLT-ELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQE 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 16129442 180 QILNLLVTLQENhGLTYVLISHNVSVIRHMSDRVaVMYLGQIVELGDAQQVLTA 233
Cdd:TIGR03771 151 LLTELFIELAGA-GTAILMTTHDLAQAMATCDRV-VLLNGRVIADGTPQQLQDP 202
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
35-233 |
4.53e-17 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 79.26 E-value: 4.53e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 35 IDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQ----------RIMQMVFQDPLS----SLNPRLPVW 100
Cdd:PRK10253 26 LTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHiqhyaskevaRRIGLLAQNATTpgdiTVQELVARG 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 101 RIITEPLWIAKRSSEQQRRALAEELAVQVGIRPEYLDRLphafSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQ 180
Cdd:PRK10253 106 RYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTL----SGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQID 181
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 16129442 181 ILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTA 233
Cdd:PRK10253 182 LLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTA 234
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
31-225 |
6.07e-17 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 77.84 E-value: 6.07e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 31 AINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQRIMQMvfqdPLSSLNPRLPVwrIITEPLWIA 110
Cdd:cd03369 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGK-IEIDGIDISTI----PLEDLRSSLTI--IPQDPTLFS 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 111 K--RSS-----EQQRRALAEELAVQVGirpeyldrlPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILN 183
Cdd:cd03369 96 GtiRSNldpfdEYSDEEIYGALRVSEG---------GLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQK 166
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 16129442 184 llVTLQENHGLTYVLISHNVSVIRHMsDRVAVMYLGQIVELG 225
Cdd:cd03369 167 --TIREEFTNSTILTIAHRLRTIIDY-DKILVMDAGEVKEYD 205
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
34-233 |
8.75e-17 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 77.96 E-value: 8.75e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 34 GIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLqPSHGQYIRSGsqrimqmvfqDPLSSLNPR----------------- 96
Cdd:COG4138 14 PISAQVNAGELIHLIGPNGAGKSTLLARMAGLL-PGQGEILLNG----------RPLSDWSAAelarhraylsqqqsppf 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 97 -LPVWRIITepLWIAKRSSEQQRRALAEELAVQVGIRPeYLDRLPHAFSGGQRQRIAIARAL-------SSQPDVIVLDE 168
Cdd:COG4138 83 aMPVFQYLA--LHQPAGASSEAVEQLLAQLAEALGLED-KLSRPLTQLSGGEWQRVRLAAVLlqvwptiNPEGQLLLLDE 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16129442 169 PTSALDISVQAQILNLLVTLQEnHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTA 233
Cdd:COG4138 160 PMNSLDVAQQAALDRLLRELCQ-QGITVVMSSHDLNHTLRHADRVWLLKQGKLVASGETAEVMTP 223
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
12-225 |
1.48e-16 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 76.44 E-value: 1.48e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 12 HINFPARKNWLGKTTEHVHAINGIdlqIRRGETLGIVGESGCGKSTLAQLLMGMLQPSH--GQYIRSGSQ-------RIM 82
Cdd:cd03213 8 NLTVTVKSSPSKSGKQLLKNVSGK---AKPGELTAIMGPSGAGKSTLLNALAGRRTGLGvsGEVLINGRPldkrsfrKII 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 83 QMVFQDplSSLNPRLPVWriitEPLWIAkrsseqqrralaeelAVQVGIrpeyldrlphafSGGQRQRIAIARALSSQPD 162
Cdd:cd03213 85 GYVPQD--DILHPTLTVR----ETLMFA---------------AKLRGL------------SGGERKRVSIALELVSNPS 131
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16129442 163 VIVLDEPTSALDISVQAQILNLLVTLQENhGLTYVLISHNVS-VIRHMSDRVAVMYLGQIVELG 225
Cdd:cd03213 132 LLFLDEPTSGLDSSSALQVMSLLRRLADT-GRTIICSIHQPSsEIFELFDKLLLLSQGRVIYFG 194
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
23-223 |
1.84e-16 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 79.57 E-value: 1.84e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 23 GKTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQrimQMVFQDPLSSLN-------- 94
Cdd:PRK11288 11 GKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGS-ILIDGQ---EMRFASTTAALAagvaiiyq 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 95 -----PRLPVwriiTEPLWIAK---RSSEQQRRALAEELAvqvgirpEYLDRL-----PHA----FSGGQRQRIAIARAL 157
Cdd:PRK11288 87 elhlvPEMTV----AENLYLGQlphKGGIVNRRLLNYEAR-------EQLEHLgvdidPDTplkyLSIGQRQMVEIAKAL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16129442 158 SSQPDVIVLDEPTSALDISVQAQILNLLVTL-QENHGLTYVliSHNVSVIRHMSDRVAVMYLGQIVE 223
Cdd:PRK11288 156 ARNARVIAFDEPTSSLSAREIEQLFRVIRELrAEGRVILYV--SHRMEEIFALCDAITVFKDGRYVA 220
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
22-230 |
2.17e-16 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 79.46 E-value: 2.17e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 22 LGKTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGM--LQPSHGQYI-----------------------RS 76
Cdd:TIGR03269 6 LTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMdqYEPTSGRIIyhvalcekcgyverpskvgepcpVC 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 77 GSQRIMQMV-FQDPLSSLNPRLPVWRII----TEPLWIAKRSSEQQRRALAE-----ELAVQVGIrpEYLD------RLP 140
Cdd:TIGR03269 86 GGTLEPEEVdFWNLSDKLRRRIRKRIAImlqrTFALYGDDTVLDNVLEALEEigyegKEAVGRAV--DLIEmvqlshRIT 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 141 HA---FSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMY 217
Cdd:TIGR03269 164 HIardLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLE 243
|
250
....*....|...
gi 16129442 218 LGQIVELGDAQQV 230
Cdd:TIGR03269 244 NGEIKEEGTPDEV 256
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
41-219 |
2.64e-16 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 74.33 E-value: 2.64e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 41 RGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQRIMQMVFQDplsslnprlpvwriiteplwiakrsseqqrra 120
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQ-------------------------------- 48
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 121 laeelavqvgIRPEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVT-----LQENHGLT 195
Cdd:smart00382 49 ----------LLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELrllllLKSEKNLT 118
|
170 180
....*....|....*....|....*....
gi 16129442 196 YVLISHNVSV-----IRHMSDRVAVMYLG 219
Cdd:smart00382 119 VILTTNDEKDlgpalLRRRFDRRIVLLLI 147
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
36-231 |
3.05e-16 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 78.90 E-value: 3.05e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 36 DLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYiRSGSQRIMQMVFQ---------------DPLSSL--NPRLP 98
Cdd:PRK10938 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGER-QSQFSHITRLSFEqlqklvsdewqrnntDMLSPGedDTGRT 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 99 VWRIITEplwiakrssEQQRRALAEELAVQVGIRPeYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQ 178
Cdd:PRK10938 102 TAEIIQD---------EVKDPARCEQLAQQFGITA-LLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASR 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 16129442 179 AQILNLLVTLQEnHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVL 231
Cdd:PRK10938 172 QQLAELLASLHQ-SGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEIL 223
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
32-221 |
1.53e-15 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 76.58 E-value: 1.53e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 32 INGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQ----------------------YI---RSGSQRIMQMVF 86
Cdd:PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYvtldghevvtrspqdglangivYIsedRKRDGLVLGMSV 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 87 QDPLSslnprLPVWRIITEPLWIAKRSSEQQrraLAEELAVQVGIRPEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVL 166
Cdd:PRK10762 348 KENMS-----LTALRYFSRAGGSLKHADEQQ---AVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLIL 419
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 16129442 167 DEPTSALDISVQAQILNLLVTLQENhGLTYVLISHNVSVIRHMSDRVAVMYLGQI 221
Cdd:PRK10762 420 DEPTRGVDVGAKKEIYQLINQFKAE-GLSIILVSSEMPEVLGMSDRILVMHEGRI 473
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
31-233 |
2.03e-15 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 74.53 E-value: 2.03e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 31 AINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQRIMQMVFQDPLSSLNPRLPV-WR--IITEPL 107
Cdd:PRK15056 22 ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGK-ISILGQPTRQALQKNLVAYVPQSEEVdWSfpVLVEDV 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 108 ----------WIaKRSSEQQRRALAEELAvQVGIRpEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISV 177
Cdd:PRK15056 101 vmmgryghmgWL-RRAKKRDRQIVTAALA-RVDMV-EFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKT 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 16129442 178 QAQILNLLVTLQEnHGLTYVLISHNVSVIRHMSDrVAVMYLGQIVELGDAQQVLTA 233
Cdd:PRK15056 178 EARIISLLRELRD-EGKTMLVSTHNLGSVTEFCD-YTVMVKGTVLASGPTETTFTA 231
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
31-234 |
6.40e-15 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 75.13 E-value: 6.40e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 31 AINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRsgsqrimqmvFQD-PLSSLnpRLPVWR-------- 101
Cdd:PRK10789 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGD-IR----------FHDiPLTKL--QLDSWRsrlavvsq 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 102 -------IITEPLWIAKRSSEQQRralAEELAVQVGIRPEYLdRLPHAF-----------SGGQRQRIAIARALSSQPDV 163
Cdd:PRK10789 397 tpflfsdTVANNIALGRPDATQQE---IEHVARLASVHDDIL-RLPQGYdtevgergvmlSGGQKQRISIARALLLNAEI 472
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16129442 164 IVLDEPTSALDISVQAQILNLLVtlQENHGLTYVLISHNVSVIRHmSDRVAVMYLGQIVELGDAQQVLTAP 234
Cdd:PRK10789 473 LILDDALSAVDGRTEHQILHNLR--QWGEGRTVIISAHRLSALTE-ASEILVMQHGHIAQRGNHDQLAQQS 540
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
34-185 |
8.12e-15 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 71.62 E-value: 8.12e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 34 GIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGS-------QRIMQMVFQDPLSSLNPRLPVWriitEP 106
Cdd:TIGR01189 18 GLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTplaeqrdEPHENILYLGHLPGLKPELSAL----EN 93
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16129442 107 LWIAKRSSEQQRRALAEELAvQVGIRpEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLL 185
Cdd:TIGR01189 94 LHFWAAIHGGAQRTIEDALA-AVGLT-GFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDEPTTALDKAGVALLAGLL 170
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
25-221 |
8.15e-15 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 74.48 E-value: 8.15e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 25 TTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMG---------MLQPSHGQYIRSGSQRIMQ---MVFQD-PLS 91
Cdd:TIGR02633 269 INPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGaypgkfegnVFINGKPVDIRNPAQAIRAgiaMVPEDrKRH 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 92 SLNPRLPVWRIITepLWIAKRSSEQQR-RALAEELAVQVGIRPEYLdRLPHAF------SGGQRQRIAIARALSSQPDVI 164
Cdd:TIGR02633 349 GIVPILGVGKNIT--LSVLKSFCFKMRiDAAAELQIIGSAIQRLKV-KTASPFlpigrlSGGNQQKAVLAKMLLTNPRVL 425
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 16129442 165 VLDEPTSALDISVQAQILNLLVTLQEnHGLTYVLISHNVSVIRHMSDRVAVMYLGQI 221
Cdd:TIGR02633 426 ILDEPTRGVDVGAKYEIYKLINQLAQ-EGVAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
29-233 |
8.68e-15 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 72.22 E-value: 8.68e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 29 VHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGsQRIMQMvfqdplsslnprlPVWRIITEPLW 108
Cdd:PRK11614 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDG-KDITDW-------------QTAKIMREAVA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 109 IAKRSSEQQRRALAEELAVQVGI---RPEYLDRLPHAF-----------------SGGQRQRIAIARALSSQPDVIVLDE 168
Cdd:PRK11614 84 IVPEGRRVFSRMTVEENLAMGGFfaeRDQFQERIKWVYelfprlherriqragtmSGGEQQMLAIGRALMSQPRLLLLDE 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16129442 169 PTSALDISVQAQILNLLVTLQEnHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVeLGDAQQVLTA 233
Cdd:PRK11614 164 PSLGLAPIIIQQIFDTIEQLRE-QGMTIFLVEQNANQALKLADRGYVLENGHVV-LEDTGDALLA 226
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
24-231 |
1.00e-14 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 74.53 E-value: 1.00e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 24 KTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSH--GQYI---RSGSQRIMQ---MVFQDPLssLNP 95
Cdd:PLN03211 76 RQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNftGTILannRKPTKQILKrtgFVTQDDI--LYP 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 96 RLPVWR--IITEPLWIAKRSSEQQRRALAEELAVQVGIRPEYLDRLPHAF----SGGQRQRIAIARALSSQPDVIVLDEP 169
Cdd:PLN03211 154 HLTVREtlVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFirgiSGGERKRVSIAHEMLINPSLLILDEP 233
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16129442 170 TSALDISVQAQILNLLVTLQeNHGLTYVLISHNVSV-IRHMSDRVAVMYLGQIVELGDAQQVL 231
Cdd:PLN03211 234 TSGLDATAAYRLVLTLGSLA-QKGKTIVTSMHQPSSrVYQMFDSVLVLSEGRCLFFGKGSDAM 295
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
28-221 |
1.02e-14 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 74.20 E-value: 1.02e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 28 HVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQpshGQY------------IRSGSQRIMQ---MVFQD-PLS 91
Cdd:PRK13549 274 HIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYP---GRWegeifidgkpvkIRNPQQAIAQgiaMVPEDrKRD 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 92 SLNPRLPVWRIITepLWIAKRSSEQQRRALAEELAVqvgIRpEYLDRL----PHAF------SGGQRQRIAIARALSSQP 161
Cdd:PRK13549 351 GIVPVMGVGKNIT--LAALDRFTGGSRIDDAAELKT---IL-ESIQRLkvktASPElaiarlSGGNQQKAVLAKCLLLNP 424
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 162 DVIVLDEPTSALDISVQAQILNLLVTLQEnHGLTYVLISHNVSVIRHMSDRVAVMYLGQI 221
Cdd:PRK13549 425 KILILDEPTRGIDVGAKYEIYKLINQLVQ-QGVAIIVISSELPEVLGLSDRVLVMHEGKL 483
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
32-233 |
1.07e-14 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 72.92 E-value: 1.07e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 32 INGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHG------QYIRSGSQRIMQMVFQDP-LSSLNPRLPVwriiT 104
Cdd:PRK13537 23 VDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGsislcgEPVPSRARHARQRVGVVPqFDNLDPDFTV----R 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 105 EPLWIAKRS---SEQQRRALAEELaVQVGIRPEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQI 181
Cdd:PRK13537 99 ENLLVFGRYfglSAAAARALVPPL-LEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLM 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 16129442 182 LNLLVTLQENhGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTA 233
Cdd:PRK13537 178 WERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
32-234 |
1.49e-14 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 72.04 E-value: 1.49e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 32 INGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQ-----------RIMQMVFQDPlsSLNPRLPV- 99
Cdd:COG4604 17 LDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGE-VLVDGLdvattpsrelaKRLAILRQEN--HINSRLTVr 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 100 -------------------WRIITEplwiakrsseqqrrALAE-ELAvqvGIRPEYLDRLphafSGGQRQRIAIARALSS 159
Cdd:COG4604 94 elvafgrfpyskgrltaedREIIDE--------------AIAYlDLE---DLADRYLDEL----SGGQRQRAFIAMVLAQ 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16129442 160 QPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTAP 234
Cdd:COG4604 153 DTDYVLLDEPLNNLDMKHSVQMMKLLRRLADELGKTVVIVLHDINFASCYADHIVAMKDGRVVAQGTPEEIITPE 227
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
1-227 |
2.06e-14 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 71.60 E-value: 2.06e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 1 MSDTLLTLRDVHINFparknwlgKTTEhvhAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGmlqpsHGQY-IRSG-- 77
Cdd:CHL00131 3 KNKPILEIKNLHASV--------NENE---ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAG-----HPAYkILEGdi 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 78 ---------------SQRIMQMVFQDP------------------------LSSLNPrLPVWRIITEPLWIakrsseqqr 118
Cdd:CHL00131 67 lfkgesildlepeerAHLGIFLAFQYPieipgvsnadflrlaynskrkfqgLPELDP-LEFLEIINEKLKL--------- 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 119 ralaeelavqVGIRPEYLDR-LPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQI---LNLLVTLQEnhgl 194
Cdd:CHL00131 137 ----------VGMDPSFLSRnVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIaegINKLMTSEN---- 202
|
250 260 270
....*....|....*....|....*....|....
gi 16129442 195 TYVLISHNVSVIRHMS-DRVAVMYLGQIVELGDA 227
Cdd:CHL00131 203 SIILITHYQRLLDYIKpDYVHVMQNGKIIKTGDA 236
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
21-232 |
2.73e-14 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 73.00 E-value: 2.73e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 21 WLGKTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQRIMQMVfqdplSSLNPRLPVW 100
Cdd:PRK13545 29 FRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAIS-----SGLNGQLTGI 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 101 RIITEPLWIAKRSSEQQRRALAE--ELAvQVGirpEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQ 178
Cdd:PRK13545 104 ENIELKGLMMGLTKEKIKEIIPEiiEFA-DIG---KFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFT 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 16129442 179 AQILNLLVTLQENhGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLT 232
Cdd:PRK13545 180 KKCLDKMNEFKEQ-GKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVD 232
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
13-217 |
4.31e-14 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 72.53 E-value: 4.31e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 13 INFPARknwLGKTTEHVHAINGIDL----QIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQY---------IR--SG 77
Cdd:PRK13409 69 VNLPEE---LEEEPVHRYGVNGFKLyglpIPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYeeepswdevLKrfRG 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 78 SQriMQMVFQDpLSSLNPR----------LP------VWRIIteplwiaKRSSEqqrRALAEELAVQVGIRPeYLDRLPH 141
Cdd:PRK13409 146 TE--LQNYFKK-LYNGEIKvvhkpqyvdlIPkvfkgkVRELL-------KKVDE---RGKLDEVVERLGLEN-ILDRDIS 211
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16129442 142 AFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHgltYVL-ISHNVSVIRHMSDRVAVMY 217
Cdd:PRK13409 212 ELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGK---YVLvVEHDLAVLDYLADNVHIAY 285
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
4-223 |
6.79e-14 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 71.57 E-value: 6.79e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 4 TLLTLRDVHINFPArknwlgkttehVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQRimq 83
Cdd:PRK10762 3 ALLQLKGIDKAFPG-----------VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEV--- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 84 mVFQDPLSS-----------LN--PRLPVWRII---TEPLWIAKRSSEQQRRALAEELAVQVGIRPEYlDRLPHAFSGGQ 147
Cdd:PRK10762 69 -TFNGPKSSqeagigiihqeLNliPQLTIAENIflgREFVNRFGRIDWKKMYAEADKLLARLNLRFSS-DKLVGELSIGE 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16129442 148 RQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQ-ENHGLTYvlISHNVSVIRHMSDRVAVMYLGQ-IVE 223
Cdd:PRK10762 147 QQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKsQGRGIVY--ISHRLKEIFEICDDVTVFRDGQfIAE 222
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
13-217 |
1.43e-13 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 70.97 E-value: 1.43e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 13 INFPARknwLGKTTEHVHAINGIDL----QIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGS-----QRIMQ 83
Cdd:COG1245 69 VNLPEE---LEEDPVHRYGENGFRLyglpVPKKGKVTGILGPNGIGKSTALKILSGELKPNLGDYDEEPSwdevlKRFRG 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 84 MVFQDPLSSL-NPRLpvwRIITEPLWIA--------------KRSSEqqrRALAEELAVQVGIRPeYLDRLPHAFSGGQR 148
Cdd:COG1245 146 TELQDYFKKLaNGEI---KVAHKPQYVDlipkvfkgtvrellEKVDE---RGKLDELAEKLGLEN-ILDRDISELSGGEL 218
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 149 QRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHglTYVL-ISHNVSVIRHMSDRVAVMY 217
Cdd:COG1245 219 QRVAIAAALLRDADFYFFDEPSSYLDIYQRLNVARLIRELAEEG--KYVLvVEHDLAILDYLADYVHILY 286
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
29-213 |
1.64e-13 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 67.35 E-value: 1.64e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 29 VHAINGIDLQIRRGETLGIVGESGCGKSTLAQllmgmlqpsHGQYiRSGSQRIMQmvfqdpLSSLNPRLPVWRIiteplw 108
Cdd:cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVN---------EGLY-ASGKARLIS------FLPKFSRNKLIFI------ 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 109 iakrsseQQRRALaeelaVQVGIRPEYLDRLPHAFSGGQRQRIAIARAL--SSQPDVIVLDEPTSALDISVQAQILNLLV 186
Cdd:cd03238 66 -------DQLQFL-----IDVGLGYLTLGQKLSTLSGGELQRVKLASELfsEPPGTLFILDEPSTGLHQQDINQLLEVIK 133
|
170 180
....*....|....*....|....*..
gi 16129442 187 TLQENhGLTYVLISHNVSVIRHmSDRV 213
Cdd:cd03238 134 GLIDL-GNTVILIEHNLDVLSS-ADWI 158
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
5-268 |
1.99e-13 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 70.46 E-value: 1.99e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 5 LLTLRDVHINFPArknwlgkttehVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQRI--- 81
Cdd:PRK15439 11 LLCARSISKQYSG-----------VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGT-LEIGGNPCarl 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 82 ---------MQMVFQDPLssLNPRLPVWRIITepLWIAKRSSEQQR-RALAEELAVQVGirpeyLDRLPHAFSGGQRQRI 151
Cdd:PRK15439 79 tpakahqlgIYLVPQEPL--LFPNLSVKENIL--FGLPKRQASMQKmKQLLAALGCQLD-----LDSSAGSLEVADRQIV 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 152 AIARALSSQPDVIVLDEPTSALdisVQAQILNLLVTLQE--NHGLTYVLISHNVSVIRHMSDRVAVMYLGQIvelgdaqq 229
Cdd:PRK15439 150 EILRGLMRDSRILILDEPTASL---TPAETERLFSRIREllAQGVGIVFISHKLPEIRQLADRISVMRDGTI-------- 218
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 16129442 230 VLTAPAHPYTRlllDSLPAIDKPLEEEWALRKT-----DLPGNR 268
Cdd:PRK15439 219 ALSGKTADLST---DDIIQAITPAAREKSLSASqklwlELPGNR 259
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
6-208 |
2.88e-13 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 70.44 E-value: 2.88e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 6 LTLRDVHINFPARKNwlgkttehVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQRI---- 81
Cdd:PTZ00265 383 IQFKNVRFHYDTRKD--------VEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLkdin 454
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 82 -------MQMVFQDPL-----------------------------------SSLNPRLPVWRIITEPLWIAKRSSE---- 115
Cdd:PTZ00265 455 lkwwrskIGVVSQDPLlfsnsiknnikyslyslkdlealsnyynedgndsqENKNKRNSCRAKCAGDLNDMSNTTDsnel 534
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 116 ----QQRRALAEELAVQVGIR---PEYLDRLPHAF-----------SGGQRQRIAIARALSSQPDVIVLDEPTSALDISV 177
Cdd:PTZ00265 535 iemrKNYQTIKDSEVVDVSKKvliHDFVSALPDKYetlvgsnasklSGGQKQRISIARAIIRNPKILILDEATSSLDNKS 614
|
250 260 270
....*....|....*....|....*....|.
gi 16129442 178 QAQILNLLVTLQENHGLTYVLISHNVSVIRH 208
Cdd:PTZ00265 615 EYLVQKTINNLKGNENRITIIIAHRLSTIRY 645
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
34-186 |
3.49e-13 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 69.89 E-value: 3.49e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 34 GIDLQIRrgetLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQRIMqmVFQ----DPLS-SLNPRLPVWRIITEPLw 108
Cdd:PLN03073 531 GIDLDSR----IAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMA--VFSqhhvDGLDlSSNPLLYMMRCFPGVP- 603
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 109 iakrssEQQRRALAEELAV--QVGIRPEYldrlphAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDI-SVQAQILNLL 185
Cdd:PLN03073 604 ------EQKLRAHLGSFGVtgNLALQPMY------TLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLdAVEALIQGLV 671
|
.
gi 16129442 186 V 186
Cdd:PLN03073 672 L 672
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
35-228 |
4.56e-13 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 69.17 E-value: 4.56e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 35 IDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQRImqmVFQDPLSS------LNPR-------LPVwR 101
Cdd:PRK11288 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQ-VYLDGKPI---DIRSPRDAiragimLCPEdrkaegiIPV-H 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 102 IITEPLWIAKRS---------SEQQRRALAEELAVQVGIRPEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSA 172
Cdd:PRK11288 347 SVADNINISARRhhlragcliNNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRG 426
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 16129442 173 LDISVQAQILNLLVTLQENhGLTYVLISHNVSVIRHMSDRVAVMYLGQIV-ELGDAQ 228
Cdd:PRK11288 427 IDVGAKHEIYNVIYELAAQ-GVAVLFVSSDLPEVLGVADRIVVMREGRIAgELAREQ 482
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
34-185 |
4.81e-13 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 66.75 E-value: 4.81e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 34 GIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQRIMQ-------MVFQDPLSSLNPRLPVWRIITep 106
Cdd:cd03231 18 GLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQrdsiargLLYLGHAPGIKTTLSVLENLR-- 95
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16129442 107 LWIAKRSSEQQRRALAeelavQVGIRPeYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLL 185
Cdd:cd03231 96 FWHADHSDEQVEEALA-----RVGLNG-FEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAM 168
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
39-217 |
5.57e-13 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 66.06 E-value: 5.57e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 39 IRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGqyirsgsqrimqmvfqdplsslNPRLPVWRIIteplwiakrsseqqr 118
Cdd:cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGD----------------------NDEWDGITPV--------------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 119 ralaeelavqvgIRPEYLDrlphaFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVL 198
Cdd:cd03222 65 ------------YKPQYID-----LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALV 127
|
170
....*....|....*....
gi 16129442 199 ISHNVSVIRHMSDRVAVMY 217
Cdd:cd03222 128 VEHDLAVLDYLSDRIHVFE 146
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
35-182 |
5.90e-13 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 69.55 E-value: 5.90e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 35 IDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGsqRImqmvfqdplsSLNPRLPvWRI---ITEPLWIAK 111
Cdd:TIGR01271 445 ISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG--RI----------SFSPQTS-WIMpgtIKDNIIFGL 511
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16129442 112 RSSEQQRRAL--AEELAVQVGIRPEYlDRLPH-----AFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQIL 182
Cdd:TIGR01271 512 SYDEYRYTSVikACQLEEDIALFPEK-DKTVLgeggiTLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIF 588
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
35-220 |
9.58e-13 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 67.19 E-value: 9.58e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 35 IDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGsqrimQMVFQDPLSSLNPrlpvwRIITEPLWIAKRSS 114
Cdd:cd03291 56 INLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-----RISFSSQFSWIMP-----GTIKENIIFGVSYD 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 115 EQQRRALAEELAVQVGIR--PEYlDRLPHA-----FSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLV- 186
Cdd:cd03291 126 EYRYKSVVKACQLEEDITkfPEK-DNTVLGeggitLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVc 204
|
170 180 190
....*....|....*....|....*....|....
gi 16129442 187 TLQENHglTYVLISHNVSVIRhMSDRVAVMYLGQ 220
Cdd:cd03291 205 KLMANK--TRILVTSKMEHLK-KADKILILHEGS 235
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
34-185 |
1.23e-12 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 65.60 E-value: 1.23e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 34 GIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQRIMQM---VFQDPL-----SSLNPRLPVWriitE 105
Cdd:PRK13538 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGE-VLWQGEPIRRQrdeYHQDLLylghqPGIKTELTAL----E 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 106 PL-WIAKRSSEQQRRALAEELAvQVGIRpEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNL 184
Cdd:PRK13538 94 NLrFYQRLHGPGDDEALWEALA-QVGLA-GFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEAL 171
|
.
gi 16129442 185 L 185
Cdd:PRK13538 172 L 172
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
6-229 |
1.25e-12 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 68.15 E-value: 1.25e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 6 LTLRDVHINFPARKNWLGKTTEHVhaINGIDLQIRRGETLGIVGESGCGKSTLAQLLM-----GML-QPS---HGQYI-R 75
Cdd:TIGR00955 17 DGSWKQLVSRLRGCFCRERPRKHL--LKNVSGVAKPGELLAVMGSSGAGKTTLMNALAfrspkGVKgSGSvllNGMPIdA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 76 SGSQRIMQMVFQDPLssLNPRLPVWR--IITEPLWIAKRSSEQQRRALAEELAVQVGIR---------PEYLDRLphafS 144
Cdd:TIGR00955 95 KEMRAISAYVQQDDL--FIPTLTVREhlMFQAHLRMPRRVTKKEKRERVDEVLQALGLRkcantrigvPGRVKGL----S 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 145 GGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQeNHGLTYVLISHNVSV-IRHMSDRVAVMYLGQIVE 223
Cdd:TIGR00955 169 GGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLA-QKGKTIICTIHQPSSeLFELFDKIILMAEGRVAY 247
|
....*.
gi 16129442 224 LGDAQQ 229
Cdd:TIGR00955 248 LGSPDQ 253
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
38-201 |
1.28e-12 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 68.05 E-value: 1.28e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 38 QIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQrimqmvfqdplsslnprlpvwriitepLWIAkrSSEQQ 117
Cdd:PRK11147 341 QVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGR-IHCGTK---------------------------LEVA--YFDQH 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 118 RRALAEE------LA-----VQVGIRPE----YL-DRLPH---------AFSGGQRQRIAIARALSSQPDVIVLDEPTSA 172
Cdd:PRK11147 391 RAELDPEktvmdnLAegkqeVMVNGRPRhvlgYLqDFLFHpkramtpvkALSGGERNRLLLARLFLKPSNLLILDEPTND 470
|
170 180
....*....|....*....|....*....
gi 16129442 173 LDIsvqaQILNLLVTLQENHGLTYVLISH 201
Cdd:PRK11147 471 LDV----ETLELLEELLDSYQGTVLLVSH 495
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
32-214 |
1.42e-12 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 67.65 E-value: 1.42e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 32 INGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQRIMQMVFQDPlSSLNPRLPVWRIITEPLWIAK 111
Cdd:TIGR03719 338 IDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGT-IEIGETVKLAYVDQSR-DALDPNKTVWEEISGGLDIIK 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 112 -----------------RSSEQQRRalaeelavqVGIrpeyldrlphaFSGGQRQRIAIARALSSQPDVIVLDEPTSALD 174
Cdd:TIGR03719 416 lgkreipsrayvgrfnfKGSDQQKK---------VGQ-----------LSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD 475
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 16129442 175 IsvqaqilNLLVTLQE---NHGLTYVLISHNvsviRHMSDRVA 214
Cdd:TIGR03719 476 V-------ETLRALEEallNFAGCAVVISHD----RWFLDRIA 507
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
34-185 |
1.73e-12 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 65.28 E-value: 1.73e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 34 GIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSG-----SQRIMQMVFQDPLSSLNPRLPVWRIITepLW 108
Cdd:PRK13539 20 GLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGgdiddPDVAEACHYLGHRNAMKPALTVAENLE--FW 97
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16129442 109 IAKRSseqQRRALAEELAVQVGIRPeyLDRLPHAF-SGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLL 185
Cdd:PRK13539 98 AAFLG---GEELDIAAALEAVGLAP--LAHLPFGYlSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELI 170
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
35-233 |
2.19e-12 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 67.66 E-value: 2.19e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 35 IDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQrIMQMVFQDPLSSLN--PRLPVW-----RIITEPL 107
Cdd:TIGR00957 1305 INVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLN-IAKIGLHDLRFKITiiPQDPVLfsgslRMNLDPF 1383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 108 wiAKRSSEQQRRALaeELAVQVGIRPEYLDRLPHA-------FSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQ 180
Cdd:TIGR00957 1384 --SQYSDEEVWWAL--ELAHLKTFVSALPDKLDHEcaeggenLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNL 1459
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 16129442 181 ILNLLVTLQENhgLTYVLISHNVSVIRHMSdRVAVMYLGQIVELGDAQQVLTA 233
Cdd:TIGR00957 1460 IQSTIRTQFED--CTVLTIAHRLNTIMDYT-RVIVLDKGEVAEFGAPSNLLQQ 1509
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
6-235 |
2.61e-12 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 66.92 E-value: 2.61e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 6 LTLRDVHINFPARKnwlgkttehvHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSqrimqmv 85
Cdd:PRK10522 323 LELRNVTFAYQDNG----------FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGK------- 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 86 fqdPLSSLNPRlpVWR-----IITEpLWIAKRSSEQQRRALAEELAVQVGIRPEYLDRLPHA--------FSGGQRQRIA 152
Cdd:PRK10522 386 ---PVTAEQPE--DYRklfsaVFTD-FHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEdgrisnlkLSKGQKKRLA 459
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 153 IARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIrHMSDRVAVMYLGQIVEL-GDAQQVL 231
Cdd:PRK10522 460 LLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYF-IHADRLLEMRNGQLSELtGEERDAA 538
|
....
gi 16129442 232 TAPA 235
Cdd:PRK10522 539 SRDA 542
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
38-234 |
2.96e-12 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 65.34 E-value: 2.96e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 38 QIRRGETLGIVGESGCGKSTLAQLLMGMLqPShgqyirSGSQRIMQMVFQD-PLSSLNPR-------------LPVWRII 103
Cdd:PRK03695 18 EVRAGEILHLVGPNGAGKSTLLARMAGLL-PG------SGSIQFAGQPLEAwSAAELARHraylsqqqtppfaMPVFQYL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 104 TepLWIAKRSSEQQRRALAEELAVQVGIRPEyLDRLPHAFSGG--QRQRIA-----IARALSSQPDVIVLDEPTSALDIS 176
Cdd:PRK03695 91 T--LHQPDKTRTEAVASALNEVAEALGLDDK-LGRSVNQLSGGewQRVRLAavvlqVWPDINPAGQLLLLDEPMNSLDVA 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 16129442 177 VQAQILNLLVTLQEnHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTAP 234
Cdd:PRK03695 168 QQAALDRLLSELCQ-QGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPE 224
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
32-223 |
3.05e-12 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 66.39 E-value: 3.05e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 32 INGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQY----------IRSGSQRImQMVFQdpLSSLNPRLPVwr 101
Cdd:PRK13536 57 VNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKItvlgvpvparARLARARI-GVVPQ--FDNLDLEFTV-- 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 102 iiTEPLWIAKRSSEQQRRALAEelavqvgIRPEYLD--RLPHA-------FSGGQRQRIAIARALSSQPDVIVLDEPTSA 172
Cdd:PRK13536 132 --RENLLVFGRYFGMSTREIEA-------VIPSLLEfaRLESKadarvsdLSGGMKRRLTLARALINDPQLLILDEPTTG 202
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 16129442 173 LDISVQAQILNLLVTLQEnHGLTYVLISHNVSVIRHMSDRVAVMYLG-QIVE 223
Cdd:PRK13536 203 LDPHARHLIWERLRSLLA-RGKTILLTTHFMEEAERLCDRLCVLEAGrKIAE 253
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
32-248 |
3.25e-12 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 67.31 E-value: 3.25e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 32 INGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGS----------QRIMQMVFQDP-LSSLNPRLPVw 100
Cdd:PLN03232 1252 LHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCdvakfgltdlRRVLSIIPQSPvLFSGTVRFNI- 1330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 101 riitEPLwiakrsSEQQRRALAEelAVQVGIRPEYLDRLP-----------HAFSGGQRQRIAIARALSSQPDVIVLDEP 169
Cdd:PLN03232 1331 ----DPF------SEHNDADLWE--ALERAHIKDVIDRNPfgldaevseggENFSVGQRQLLSLARALLRRSKILVLDEA 1398
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16129442 170 TSALDISVQAQILNLLvtLQENHGLTYVLISHNVSVIRHmSDRVAVMYLGQIVELGDAQQVLTAPAHPYTRLLLDSLPA 248
Cdd:PLN03232 1399 TASVDVRTDSLIQRTI--REEFKSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGPA 1474
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
46-211 |
5.85e-12 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 66.07 E-value: 5.85e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 46 GIVGESGCGKSTLAQLLMGMLQPSHGQY-----IRSGSQRIMQMVFQDplsslnprlpvWRIIT------EPLWIAKrsS 114
Cdd:PRK15064 31 GLIGANGCGKSTFMKILGGDLEPSAGNVsldpnERLGKLRQDQFAFEE-----------FTVLDtvimghTELWEVK--Q 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 115 EQQR-RALAE-----------------------------ELAVQVGIRPEYLDRLPHAFSGGQRQRIAIARALSSQPDVI 164
Cdd:PRK15064 98 ERDRiYALPEmseedgmkvadlevkfaemdgytaearagELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDIL 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 16129442 165 VLDEPTSALDISV---QAQILNllvtlqeNHGLTYVLISH-----NvSVIRHMSD 211
Cdd:PRK15064 178 LLDEPTNNLDINTirwLEDVLN-------ERNSTMIIISHdrhflN-SVCTHMAD 224
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
20-225 |
7.59e-12 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 66.15 E-value: 7.59e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 20 NWLGKTTEHvhAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHgqyirSGSQRIMQMVFQDPLSSLNPRLPV 99
Cdd:PLN03232 623 SWDSKTSKP--TLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAE-----TSSVVIRGSVAYVPQVSWIFNATV 695
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 100 WRIItepLWIAKRSSEQQRRALaEELAVQvgirpEYLDRLPHA-----------FSGGQRQRIAIARALSSQPDVIVLDE 168
Cdd:PLN03232 696 RENI---LFGSDFESERYWRAI-DVTALQ-----HDLDLLPGRdlteigergvnISGGQKQRVSMARAVYSNSDIYIFDD 766
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 16129442 169 PTSALDISVQAQILNLLVTlQENHGLTYVLISHNVSVIRHMsDRVAVMYLGQIVELG 225
Cdd:PLN03232 767 PLSALDAHVAHQVFDSCMK-DELKGKTRVLVTNQLHFLPLM-DRIILVSEGMIKEEG 821
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
134-215 |
7.99e-12 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 65.82 E-value: 7.99e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 134 EYLDRLPHAF-----------SGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHN 202
Cdd:PTZ00265 1339 EFIESLPNKYdtnvgpygkslSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHR 1418
|
90
....*....|...
gi 16129442 203 VSVIRHmSDRVAV 215
Cdd:PTZ00265 1419 IASIKR-SDKIVV 1430
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
36-233 |
1.28e-11 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 64.97 E-value: 1.28e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 36 DLQIRRGETLGIVGESGCGKSTLAQLLMG------------------MLQ---PSHGQ-----YIRSGSQ---------- 79
Cdd:PRK11147 23 ELHIEDNERVCLVGRNGAGKSTLMKILNGevllddgriiyeqdlivaRLQqdpPRNVEgtvydFVAEGIEeqaeylkryh 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 80 RIMQMVFQDPLSSLNPRLPVWRIITE--PLWiakrsseqQRRALAEELAVQVGIRPeylDRLPHAFSGGQRQRIAIARAL 157
Cdd:PRK11147 103 DISHLVETDPSEKNLNELAKLQEQLDhhNLW--------QLENRINEVLAQLGLDP---DAALSSLSGGWLRKAALGRAL 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16129442 158 SSQPDVIVLDEPTSALDISVQAQILNLLVTLQEnhglTYVLISHNVSVIRHMSDRVAVMYLGQIVEL-GDAQQVLTA 233
Cdd:PRK11147 172 VSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQG----SIIFISHDRSFIRNMATRIVDLDRGKLVSYpGNYDQYLLE 244
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
8-231 |
1.43e-11 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 63.68 E-value: 1.43e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 8 LRDVHInfPARKNwlgkttEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQRIMQMVfq 87
Cdd:PRK13546 24 MKDALI--PKHKN------KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAIS-- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 88 dplSSLNPRLPVWRIItEPLWIAKRSSEQQRRALAEELaVQVGIRPEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLD 167
Cdd:PRK13546 94 ---AGLSGQLTGIENI-EFKMLCMGFKRKEIKAMTPKI-IEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVID 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16129442 168 EPTSALDISVQAQILNLLVTLQEnHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVL 231
Cdd:PRK13546 169 EALSVGDQTFAQKCLDKIYEFKE-QNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVL 231
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
6-168 |
1.61e-11 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 64.43 E-value: 1.61e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 6 LTLRDVHINFPARKNwlgkttEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQyIRSGSQRI---- 81
Cdd:COG4615 328 LELRGVTYRYPGEDG------DEGFTLGPIDLTIRRGELVFIVGGNGSGKSTLAKLLTGLYRPESGE-ILLDGQPVtadn 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 82 ----MQM---VFQDPlsSLNPRLpvwriitepLWIAKRSSEQQRRALAEELAVQ--VGIRPEYLDRLphAFSGGQRQRIA 152
Cdd:COG4615 401 reayRQLfsaVFSDF--HLFDRL---------LGLDGEADPARARELLERLELDhkVSVEDGRFSTT--DLSQGQRKRLA 467
|
170
....*....|....*.
gi 16129442 153 IARALSSQPDVIVLDE 168
Cdd:COG4615 468 LLVALLEDRPILVFDE 483
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
31-230 |
1.71e-11 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 65.03 E-value: 1.71e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 31 AINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQRIMQMVFQDPLSSLNPRL-PVWRIIT--EPL 107
Cdd:TIGR01257 1954 AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFdAIDDLLTgrEHL 2033
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 108 WIAKRsseqQRRALAEEL------AVQVGIRPEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQI 181
Cdd:TIGR01257 2034 YLYAR----LRGVPAEEIekvanwSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRML 2109
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 16129442 182 LNLLVTLQEnHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQV 230
Cdd:TIGR01257 2110 WNTIVSIIR-EGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHL 2157
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
32-232 |
2.04e-11 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 64.42 E-value: 2.04e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 32 INGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQY-----IRSGSQRIMQMVF----QDPLSSLNPrlpvwri 102
Cdd:PRK10636 328 LDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIglakgIKLGYFAQHQLEFlradESPLQHLAR------- 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 103 iteplwIAKRSSEQQRRALAEELAVQVGIRPEYLDRlphaFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQIL 182
Cdd:PRK10636 401 ------LAPQELEQKLRDYLGGFGFQGDKVTEETRR----FSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALT 470
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 16129442 183 NLLVTLQEnhglTYVLISHNVSVIRHMSDRVAVMYLGQIV----ELGDAQQVLT 232
Cdd:PRK10636 471 EALIDFEG----ALVVVSHDRHLLRSTTDDLYLVHDGKVEpfdgDLEDYQQWLS 520
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
31-174 |
2.46e-11 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 64.38 E-value: 2.46e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 31 AINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHG------QYIRSGS----QRI--MQMVFqdplsSLNPRLP 98
Cdd:NF033858 281 AVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGeawlfgQPVDAGDiatrRRVgyMSQAF-----SLYGELT 355
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16129442 99 VwRiitEPLWI-AK--RSSEQQRRALAEELAVQVGIRpEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALD 174
Cdd:NF033858 356 V-R---QNLELhARlfHLPAAEIAARVAEMLERFDLA-DVADALPDSLPLGIRQRLSLAVAVIHKPELLILDEPTSGVD 429
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
30-201 |
2.96e-11 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 61.90 E-value: 2.96e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 30 HAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLqpshgqyirsgSQRIMQMVFQDPLSSLNPRLPvwriITEPLWI 109
Cdd:COG2401 44 YVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGAL-----------KGTPVAGCVDVPDNQFGREAS----LIDAIGR 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 110 AKRSSEqqrralAEELAVQVGIRPEYL-DRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDiSVQAQILNLLV-T 187
Cdd:COG2401 109 KGDFKD------AVELLNAVGLSDAVLwLRRFKELSTGQKFRFRLALLLAERPKLLVIDEFCSHLD-RQTAKRVARNLqK 181
|
170
....*....|....
gi 16129442 188 LQENHGLTYVLISH 201
Cdd:COG2401 182 LARRAGITLVVATH 195
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
32-208 |
3.03e-11 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 64.00 E-value: 3.03e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 32 INGIDLQIRRGETLGIVGESGCGKSTLAQLLmGMLQPSHGQYIRSGSQRIMQMVFQDPLSSLnprlpvwRIITEPLWIAK 111
Cdd:TIGR00954 468 IESLSFEVPSGNNLLICGPNGCGKSSLFRIL-GELWPVYGGRLTKPAKGKLFYVPQRPYMTL-------GTLRDQIIYPD 539
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 112 RSSEQQRRALAEELAVQvgirpeYLD--RLPH----------------AFSGGQRQRIAIARALSSQPDVIVLDEPTSAL 173
Cdd:TIGR00954 540 SSEDMKRRGLSDKDLEQ------ILDnvQLTHilereggwsavqdwmdVLSGGEKQRIAMARLFYHKPQFAILDECTSAV 613
|
170 180 190
....*....|....*....|....*....|....*
gi 16129442 174 DISVQAQILNLLvtlqENHGLTYVLISHNVSVIRH 208
Cdd:TIGR00954 614 SVDVEGYMYRLC----REFGITLFSVSHRKSLWKY 644
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
4-232 |
3.32e-11 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 63.65 E-value: 3.32e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 4 TLLTLRDVHINFPARK----NWLGKTTEHVHAI--------NGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHG 71
Cdd:PRK09700 239 RLMVGRELQNRFNAMKenvsNLAHETVFEVRNVtsrdrkkvRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGG 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 72 QYIRSGSQrimqMVFQDPLSSL-------------NPRLPVWRI-----ITEPLWIAKRS------SEQQRRALAEELAV 127
Cdd:PRK09700 319 EIRLNGKD----ISPRSPLDAVkkgmayitesrrdNGFFPNFSIaqnmaISRSLKDGGYKgamglfHEVDEQRTAENQRE 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 128 QVGIRPEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENhGLTYVLISHNVSVIR 207
Cdd:PRK09700 395 LLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADD-GKVILMVSSELPEII 473
|
250 260
....*....|....*....|....*
gi 16129442 208 HMSDRVAVMYLGQIVELGDAQQVLT 232
Cdd:PRK09700 474 TVCDRIAVFCEGRLTQILTNRDDMS 498
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
32-236 |
3.69e-11 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 62.54 E-value: 3.69e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 32 INGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPShgqyIRSGSQRIMQMVFQD--PLSSLN-PRLPVWRII----T 104
Cdd:PRK13547 17 LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGG----GAPRGARVTGDVTLNgePLAAIDaPRLARLRAVlpqaA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 105 EPLWI--------------AKRSSEQQRR--ALAEELAVQVGIRPeYLDRLPHAFSGGQRQRIAIARALS---------S 159
Cdd:PRK13547 93 QPAFAfsareivllgryphARRAGALTHRdgEIAWQALALAGATA-LVGRDVTTLSGGELARVQFARVLAqlwpphdaaQ 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16129442 160 QPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTaPAH 236
Cdd:PRK13547 172 PPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVLT-PAH 247
|
|
| ABCC_SUR2 |
cd03288 |
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The ... |
20-242 |
8.43e-11 |
|
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213255 [Multi-domain] Cd Length: 257 Bit Score: 61.08 E-value: 8.43e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 20 NWLGKTTEHVHAIngidlqIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQrimqmVFQDPLSSLNPRLPV 99
Cdd:cd03288 31 NNLKPVLKHVKAY------IKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGID-----ISKLPLHTLRSRLSI 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 100 wrIITEPLWIA-----------KRSSEQQRRALA-EELAVQVGIRPEYLDRL----PHAFSGGQRQRIAIARALSSQPDV 163
Cdd:cd03288 100 --ILQDPILFSgsirfnldpecKCTDDRLWEALEiAQLKNMVKSLPGGLDAVvtegGENFSVGQRQLFCLARAFVRKSSI 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16129442 164 IVLDEPTSALDISVQAQILNLLVTLQENHglTYVLISHNVSVIRHmSDRVAVMYLGQIVELGDAQQVLTAPAHPYTRLL 242
Cdd:cd03288 178 LIMDEATASIDMATENILQKVVMTAFADR--TVVTIAHRVSTILD-ADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
30-224 |
1.21e-10 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 61.87 E-value: 1.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 30 HAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQRImQMVFQDPlsSLNPRLPVWRIITEPLW- 108
Cdd:TIGR03719 19 EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKDFNGEARPQPGIKV-GYLPQEP--QLDPTKTVRENVEEGVAe 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 109 ----------IAKRSSEQQRR--ALAEE---------------LAVQVGIRPEYLdRLP------HAFSGGQRQRIAIAR 155
Cdd:TIGR03719 96 ikdaldrfneISAKYAEPDADfdKLAAEqaelqeiidaadawdLDSQLEIAMDAL-RCPpwdadvTKLSGGERRRVALCR 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16129442 156 ALSSQPDVIVLDEPTSALDISVQAQILNLlvtLQENHGlTYVLISHNvsviRHMSDRVAvmylGQIVEL 224
Cdd:TIGR03719 175 LLLSKPDMLLLDEPTNHLDAESVAWLERH---LQEYPG-TVVAVTHD----RYFLDNVA----GWILEL 231
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
29-222 |
1.22e-10 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 62.05 E-value: 1.22e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 29 VHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSG-------SQRIMQ----MVFQDplssLNprL 97
Cdd:PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGkeidfksSKEALEngisMVHQE----LN--L 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 98 PVWRIITEPLWIAKRSSE----------QQRRALAEELAVQVGIRPEYLDrlphaFSGGQRQRIAIARALSSQPDVIVLD 167
Cdd:PRK10982 85 VLQRSVMDNMWLGRYPTKgmfvdqdkmyRDTKAIFDELDIDIDPRAKVAT-----LSVSQMQMIEIAKAFSYNAKIVIMD 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 16129442 168 EPTSALDISVQAQILNLLVTLQENhGLTYVLISHNVSVIRHMSDRVAVMYLGQIV 222
Cdd:PRK10982 160 EPTSSLTEKEVNHLFTIIRKLKER-GCGIVYISHKMEEIFQLCDEITILRDGQWI 213
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
32-232 |
1.48e-10 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 62.06 E-value: 1.48e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 32 INGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQrIMQMVFQDPLSSLN--PRLPVW-----RIIT 104
Cdd:PLN03130 1255 LHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCD-ISKFGLMDLRKVLGiiPQAPVLfsgtvRFNL 1333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 105 EP--------LWiakrssEQQRRALAEELavqvgIR--PEYLD----RLPHAFSGGQRQRIAIARALSSQPDVIVLDEPT 170
Cdd:PLN03130 1334 DPfnehndadLW------ESLERAHLKDV-----IRrnSLGLDaevsEAGENFSVGQRQLLSLARALLRRSKILVLDEAT 1402
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16129442 171 SALDISVQAQILNllvTLQEN-HGLTYVLISHNVSVIRHmSDRVAVMYLGQIVELGDAQQVLT 232
Cdd:PLN03130 1403 AAVDVRTDALIQK---TIREEfKSCTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENLLS 1461
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
37-202 |
1.67e-10 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 61.72 E-value: 1.67e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 37 LQIRRG---------------ETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQRiMQMVFQDplsslNPRLPV-- 99
Cdd:PRK10636 7 LQIRRGvrvlldnatatinpgQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQ-LAWVNQE-----TPALPQpa 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 100 ----------WRIITEPLWIAKRSSEQQR----------------RALAEELAVQVGIRPEYLDRLPHAFSGGQRQRIAI 153
Cdd:PRK10636 81 leyvidgdreYRQLEAQLHDANERNDGHAiatihgkldaidawtiRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNL 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 16129442 154 ARALSSQPDVIVLDEPTSALDisvqaqiLNLLVTLQ---ENHGLTYVLISHN 202
Cdd:PRK10636 161 AQALICRSDLLLLDEPTNHLD-------LDAVIWLEkwlKSYQGTLILISHD 205
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
35-226 |
6.72e-10 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 60.18 E-value: 6.72e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 35 IDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGS-----QR--IMQMVFQDPLSSLNPRLPvwriitEPL 107
Cdd:PTZ00243 679 VSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSiayvpQQawIMNATVRGNILFFDEEDA------ARL 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 108 WIAKRSS--EQQRRALAEELAVQVGIRPEYLdrlphafSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLL 185
Cdd:PTZ00243 753 ADAVRVSqlEADLAQLGGGLETEIGEKGVNL-------SGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEEC 825
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 16129442 186 VtLQENHGLTYVLISHNVSVIRHmSDRVAVMYLGQIVELGD 226
Cdd:PTZ00243 826 F-LGALAGKTRVLATHQVHVVPR-ADYVVALGDGRVEFSGS 864
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
32-225 |
1.24e-09 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 59.41 E-value: 1.24e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 32 INGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGS----------QRIMQMVFQDP-LSSLNPRLPVw 100
Cdd:PTZ00243 1326 LRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGReigayglrelRRQFSMIPQDPvLFDGTVRQNV- 1404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 101 riitEPLWIAkrSSEQQRRALaeELavqVGIR------PEYLD-RLPHA---FSGGQRQRIAIARALSSQ-PDVIVLDEP 169
Cdd:PTZ00243 1405 ----DPFLEA--SSAEVWAAL--EL---VGLRervaseSEGIDsRVLEGgsnYSVGQRQLMCMARALLKKgSGFILMDEA 1473
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 16129442 170 TSALDISVQAQILNLLVTLQENHglTYVLISHNVSVIRHMsDRVAVMYLGQIVELG 225
Cdd:PTZ00243 1474 TANIDPALDRQIQATVMSAFSAY--TVITIAHRLHTVAQY-DKIIVMDHGAVAEMG 1526
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
31-221 |
2.08e-09 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 58.49 E-value: 2.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 31 AINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQrimqmvFQDPLSSLNPRL---PVWRIITEPL 107
Cdd:TIGR01257 945 AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKD------IETNLDAVRQSLgmcPQHNILFHHL 1018
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 108 WIAK----------RSSEQ---QRRALAEELAVQVGIRPEYLDrlphaFSGGQRQRIAIARALSSQPDVIVLDEPTSALD 174
Cdd:TIGR01257 1019 TVAEhilfyaqlkgRSWEEaqlEMEAMLEDTGLHHKRNEEAQD-----LSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVD 1093
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 16129442 175 ISVQAQILNLLvtLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQI 221
Cdd:TIGR01257 1094 PYSRRSIWDLL--LKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRL 1138
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
32-226 |
2.14e-09 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 57.11 E-value: 2.14e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 32 INGIDLQIRRGETLGIVGESGCGKSTLAQLLMGM--LQPSHGQYIRSGSQRI-----------MQMVFQDPL-------- 90
Cdd:PRK09580 17 LRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGRedYEVTGGTVEFKGKDLLelspedragegIFMAFQYPVeipgvsnq 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 91 ----SSLNprlpvwriiteplwiAKRSSEQQR-------RALAEELAVQVGIRPEYLDR-LPHAFSGGQRQRIAIARALS 158
Cdd:PRK09580 97 fflqTALN---------------AVRSYRGQEpldrfdfQDLMEEKIALLKMPEDLLTRsVNVGFSGGEKKRNDILQMAV 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16129442 159 SQPDVIVLDEPTSALDISVQAQILNLLVTLQeNHGLTYVLISHNVSVIRHMS-DRVAVMYLGQIVELGD 226
Cdd:PRK09580 162 LEPELCILDESDSGLDIDALKIVADGVNSLR-DGKRSFIIVTHYQRILDYIKpDYVHVLYQGRIVKSGD 229
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
22-201 |
2.48e-09 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 57.98 E-value: 2.48e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 22 LGKTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQRIMQMVfQDPLSSLNPRLPVWR 101
Cdd:PRK15064 325 LTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYA-QDHAYDFENDLTLFD 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 102 iiteplWIAkrsseQQRRALAEELAVQvGIrpeyLDRL----------PHAFSGGQRQRIAIARALSSQPDVIVLDEPTS 171
Cdd:PRK15064 404 ------WMS-----QWRQEGDDEQAVR-GT----LGRLlfsqddikksVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTN 467
|
170 180 190
....*....|....*....|....*....|.
gi 16129442 172 ALDI-SVQAqiLNLLVtlqENHGLTYVLISH 201
Cdd:PRK15064 468 HMDMeSIES--LNMAL---EKYEGTLIFVSH 493
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
29-232 |
3.45e-09 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 57.05 E-value: 3.45e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 29 VHAINGIDLQIRRGETLGIVGESGcgkstlAQLLMGMLqPSHGQYIRSGSQRIMQMVFQDPLSSLNPRLPVWRIIT---- 104
Cdd:NF000106 26 VKAVDGVDLDVREGTVLGVLGP*G------AA**RGAL-PAHV*GPDAGRRPWRF*TWCANRRALRRTIG*HRPVR*grr 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 105 ------EPLWIAKRS---SEQQRRALAEELAVQVGIrPEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDI 175
Cdd:NF000106 99 esfsgrENLYMIGR*ldlSRKDARARADELLERFSL-TEAAGRAAAKYSGGMRRRLDLAASMIGRPAVLYLDEPTTGLDP 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 16129442 176 SVQAQILNLLVTLQENhGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLT 232
Cdd:NF000106 178 RTRNEVWDEVRSMVRD-GATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDELKT 233
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
144-225 |
3.91e-09 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 57.83 E-value: 3.91e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 144 SGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTlQENHGLTYVLISHNVSVIRHMsDRVAVMYLGQIVE 223
Cdd:PLN03130 742 SGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIK-DELRGKTRVLVTNQLHFLSQV-DRIILVHEGMIKE 819
|
..
gi 16129442 224 LG 225
Cdd:PLN03130 820 EG 821
|
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
29-213 |
1.39e-08 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 54.19 E-value: 1.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 29 VHAINGIDLQIRRGETLGIVGESGCGKSTLAqllMGMLQpSHGQ--YIRSGS----QRIMQMvfQDP-------LS---- 91
Cdd:cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLA---FDTIY-AEGQrrYVESLSayarQFLGQM--DKPdvdsiegLSpaia 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 92 ------SLNPRLPVwRIITEP------LWiakrsseqQRRALAEELAVQVGIRPEYL--DRLPHAFSGGQRQRIAIARAL 157
Cdd:cd03270 82 idqkttSRNPRSTV-GTVTEIydylrlLF--------ARVGIRERLGFLVDVGLGYLtlSRSAPTLSGGEAQRIRLATQI 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 158 SSQ-PDVI-VLDEPTSALDisvQAQILNLLVTLQE--NHGLTYVLISHNVSVIRHmSDRV 213
Cdd:cd03270 153 GSGlTGVLyVLDEPSIGLH---PRDNDRLIETLKRlrDLGNTVLVVEHDEDTIRA-ADHV 208
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
133-219 |
1.75e-08 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 55.64 E-value: 1.75e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 133 PEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQEnhglTYVLISHN-------VSV 205
Cdd:PLN03073 335 PEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPK----TFIVVSHAreflntvVTD 410
|
90
....*....|....
gi 16129442 206 IRHMSDRVAVMYLG 219
Cdd:PLN03073 411 ILHLHGQKLVTYKG 424
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
142-229 |
2.04e-08 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 55.12 E-value: 2.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 142 AFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTL-QENHGLtyVLISHNVSVIRHMSDRVAVMYLGQ 220
Cdd:PRK10982 391 SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELaKKDKGI--IIISSEMPELLGITDRILVMSNGL 468
|
90
....*....|..
gi 16129442 221 ---IVELGDAQQ 229
Cdd:PRK10982 469 vagIVDTKTTTQ 480
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
9-229 |
2.95e-08 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 54.41 E-value: 2.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 9 RDVHINFPAR-----------KNWlgkTTEH-VHA----INGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMlqpSHGQ 72
Cdd:NF040905 240 RDLEDRYPERtpkigevvfevKNW---TVYHpLHPerkvVDDVSLNVRRGEIVGIAGLMGAGRTELAMSVFGR---SYGR 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 73 YIrSGSqrimqmVFQD----PLSS--------------------LNPRLPVWRIITEPLW--IAKRS--SEQQRRALAEE 124
Cdd:NF040905 314 NI-SGT------VFKDgkevDVSTvsdaidaglayvtedrkgygLNLIDDIKRNITLANLgkVSRRGviDENEEIKVAEE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 125 LAVQVGIRPEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDisVQA-----QILNLLVtlqeNHGLTYVLI 199
Cdd:NF040905 387 YRKKMNIKTPSVFQKVGNLSGGNQQKVVLSKWLFTDPDVLILDEPTRGID--VGAkyeiyTIINELA----AEGKGVIVI 460
|
250 260 270
....*....|....*....|....*....|...
gi 16129442 200 SHNVSVIRHMSDRVAVMYLGQIV-EL--GDAQQ 229
Cdd:NF040905 461 SSELPELLGMCDRIYVMNEGRITgELprEEASQ 493
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
32-214 |
3.18e-08 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 54.74 E-value: 3.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 32 INGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPShgqyirSGSQRI---MQMVFQDPL-SSLNPRLPVWRIIT--- 104
Cdd:PRK11819 340 IDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD------SGTIKIgetVKLAYVDQSrDALDPNKTVWEEISggl 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 105 EPLWIAKRS--------------SEQQRRalaeelavqVGIrpeyldrlphaFSGGQRQRIAIARALSSQPDVIVLDEPT 170
Cdd:PRK11819 414 DIIKVGNREipsrayvgrfnfkgGDQQKK---------VGV-----------LSGGERNRLHLAKTLKQGGNVLLLDEPT 473
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 16129442 171 SALDISvqaqilnllvTLQ--ENHGLTY----VLISHNvsviRHMSDRVA 214
Cdd:PRK11819 474 NDLDVE----------TLRalEEALLEFpgcaVVISHD----RWFLDRIA 509
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
46-224 |
5.36e-08 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 53.97 E-value: 5.36e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 46 GIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQRImQMVFQDPLssLNPRLPVWRIITEPL-----------WIAKRSS 114
Cdd:PRK11819 37 GVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKV-GYLPQEPQ--LDPEKTVRENVEEGVaevkaaldrfnEIYAAYA 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 115 EQQRR--ALAEELA-VQvgirpEYLD------------------RLPHA------FSGGQRQRIAIARALSSQPDVIVLD 167
Cdd:PRK11819 114 EPDADfdALAAEQGeLQ-----EIIDaadawdldsqleiamdalRCPPWdakvtkLSGGERRRVALCRLLLEKPDMLLLD 188
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 16129442 168 EPTSALDI-SVQAqilnLLVTLQENHGlTYVLISHNvsviRHMSDRVAvmylGQIVEL 224
Cdd:PRK11819 189 EPTNHLDAeSVAW----LEQFLHDYPG-TVVAVTHD----RYFLDNVA----GWILEL 233
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
143-222 |
1.65e-07 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 50.72 E-value: 1.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 143 FSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSV-IRHMSDRVAVMYLGQI 221
Cdd:cd03233 119 ISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDeIYDLFDKVLVLYEGRQ 198
|
.
gi 16129442 222 V 222
Cdd:cd03233 199 I 199
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
32-219 |
9.55e-07 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 48.39 E-value: 9.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 32 INGIDLQIRRGETLGIVGESGCGKSTLAQLLmgmlqpshgqyirsgSQR-IMQMVFQDPLSSLNPRLPVWRIITeplwia 110
Cdd:cd03232 23 LNNISGYVKPGTLTALMGESGAGKTTLLDVL---------------AGRkTAGVITGEILINGRPLDKNFQRST------ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 111 krSSEQQRRALAEELAVQVGIRPEYLDRlphAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQe 190
Cdd:cd03232 82 --GYVEQQDVHSPNLTVREALRFSALLR---GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLA- 155
|
170 180 190
....*....|....*....|....*....|
gi 16129442 191 NHGLTYVLISHNVS-VIRHMSDRVAVMYLG 219
Cdd:cd03232 156 DSGQAILCTIHQPSaSIFEKFDRLLLLKRG 185
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
35-175 |
1.01e-06 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 48.69 E-value: 1.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 35 IDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSG-----SQRIMQMVFQDPLSSLNPRLPVwriiTEPL-W 108
Cdd:PRK13543 30 LDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGktatrGDRSRFMAYLGHLPGLKADLST----LENLhF 105
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16129442 109 IAKRSSEQQRRALAEELAVqVGIrPEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDI 175
Cdd:PRK13543 106 LCGLHGRRAKQMPGSALAI-VGL-AGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDL 170
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
144-207 |
1.80e-06 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 49.24 E-value: 1.80e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 144 SGGQRQRIAIARALSSQ---PDVIVLDEPTSAL---DIsvqAQILNLLVTLQENhGLTYVLISHNVSVIR 207
Cdd:TIGR00630 831 SGGEAQRIKLAKELSKRstgRTLYILDEPTTGLhfdDI---KKLLEVLQRLVDK-GNTVVVIEHNLDVIK 896
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
47-207 |
2.41e-06 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 47.17 E-value: 2.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 47 IVGESGCGKSTLAQLLMGMLQPSHGQ-YIRSGSQRIMQMVFQDPLSSlNPRLPVWRIITEPLwiaKRSSEQQRRALAEEL 125
Cdd:PRK13541 31 IKGANGCGKSSLLRMIAGIMQPSSGNiYYKNCNINNIAKPYCTYIGH-NLGLKLEMTVFENL---KFWSEIYNSAETLYA 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 126 AVQVGIRPEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDiSVQAQILNLLVTLQENHGLTYVLISHNVSV 205
Cdd:PRK13541 107 AIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLS-KENRDLLNNLIVMKANSGGIVLLSSHLESS 185
|
..
gi 16129442 206 IR 207
Cdd:PRK13541 186 IK 187
|
|
| ABC_UvrA_II |
cd03271 |
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ... |
144-207 |
2.86e-06 |
|
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213238 [Multi-domain] Cd Length: 261 Bit Score: 47.61 E-value: 2.86e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16129442 144 SGGQRQRIAIARALSSQ---PDVIVLDEPTSALDISVQAQILNLLVTLQENhGLTYVLISHNVSVIR 207
Cdd:cd03271 171 SGGEAQRIKLAKELSKRstgKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK-GNTVVVIEHNLDVIK 236
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
144-232 |
9.05e-06 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 47.41 E-value: 9.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 144 SGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTL-QENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIV 222
Cdd:TIGR00956 211 SGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSaNILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQI 290
|
90
....*....|
gi 16129442 223 ELGDAQQVLT 232
Cdd:TIGR00956 291 YFGPADKAKQ 300
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
144-207 |
1.17e-05 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 46.94 E-value: 1.17e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 144 SGGQRQRIAIARALS---SQPDVIVLDEPTSAL---DISVQAQILNLLVtlqeNHGLTYVLISHNVSVIR 207
Cdd:COG0178 828 SGGEAQRVKLASELSkrsTGKTLYILDEPTTGLhfhDIRKLLEVLHRLV----DKGNTVVVIEHNLDVIK 893
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
136-249 |
2.21e-05 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 45.98 E-value: 2.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 136 LDRLP-----HAFSGGQRQRIAIARAL---SSQPDVIVLDEPTSALDI-SVQAQILNLLVTLQENHglTYVLISHNVSVI 206
Cdd:PRK00635 798 LDYLPlgrplSSLSGGEIQRLKLAYELlapSKKPTLYVLDEPTTGLHThDIKALIYVLQSLTHQGH--TVVIIEHNMHVV 875
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 16129442 207 RhMSDRvaVMYLGQivELGDAQQVLTAPAHPYTRLLLDSLPAI 249
Cdd:PRK00635 876 K-VADY--VLELGP--EGGNLGGYLLASCSPEELIHLHTPTAK 913
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
10-225 |
2.69e-05 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 45.61 E-value: 2.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 10 DVHINFPARKNWLGKTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMlqpSHGQYIrSGSQRI-----MQM 84
Cdd:PLN03140 874 NYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGR---KTGGYI-EGDIRIsgfpkKQE 949
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 85 VF--------QDPLSSlnPRLPVWR--IITEPLWIAKRSSEQQRRALAEELAVQVgirpeYLDRLPHAFSG--------- 145
Cdd:PLN03140 950 TFarisgyceQNDIHS--PQVTVREslIYSAFLRLPKEVSKEEKMMFVDEVMELV-----ELDNLKDAIVGlpgvtglst 1022
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 146 GQRQRIAIARALSSQPDVIVLDEPTSALDiSVQAQILNLLVTLQENHGLTYVLISHNVSV-IRHMSDRVAVMYL-GQIVE 223
Cdd:PLN03140 1023 EQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIdIFEAFDELLLMKRgGQVIY 1101
|
..
gi 16129442 224 LG 225
Cdd:PLN03140 1102 SG 1103
|
|
| uvrA |
PRK00349 |
excinuclease ABC subunit UvrA; |
144-207 |
2.71e-05 |
|
excinuclease ABC subunit UvrA;
Pssm-ID: 234734 [Multi-domain] Cd Length: 943 Bit Score: 45.83 E-value: 2.71e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 144 SGGQRQRIAIARALSSQPD---VIVLDEPTSAL---DISVQAQILNLLVtlqeNHGLTYVLISHNVSVIR 207
Cdd:PRK00349 832 SGGEAQRVKLAKELSKRSTgktLYILDEPTTGLhfeDIRKLLEVLHRLV----DKGNTVVVIEHNLDVIK 897
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
133-211 |
6.01e-05 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 43.36 E-value: 6.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 133 PEYLDRLphafSGGQRQ------RIAIARALSSQPDVIVLDEPTSALDI-SVQAQILNLLVTLQENHGLTYVLISHNVSV 205
Cdd:cd03240 110 LDMRGRC----SGGEKVlasliiRLALAETFGSNCGILALDEPTTNLDEeNIEESLAEIIEERKSQKNFQLIVITHDEEL 185
|
....*.
gi 16129442 206 IRHMSD 211
Cdd:cd03240 186 VDAADH 191
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
26-206 |
7.53e-05 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 44.33 E-value: 7.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 26 TEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLL-----MGMLQP----SHGQYIRSGSQRIMQMVFQDPLSSlnPR 96
Cdd:TIGR00956 773 KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLaervtTGVITGgdrlVNGRPLDSSFQRSIGYVQQQDLHL--PT 850
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 97 LPVwriiTEPLWIAKRSSEQQRRALAEELA-VQVGIRPEYLDRLPHAFSG--------GQRQRIAIARALSSQPDVIV-L 166
Cdd:TIGR00956 851 STV----RESLRFSAYLRQPKSVSKSEKMEyVEEVIKLLEMESYADAVVGvpgeglnvEQRKRLTIGVELVAKPKLLLfL 926
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 16129442 167 DEPTSALDISVQAQILNLLVTLQeNHGLTYVLISHNVSVI 206
Cdd:TIGR00956 927 DEPTSGLDSQTAWSICKLMRKLA-DHGQAILCTIHQPSAI 965
|
|
| AAA_25 |
pfam13481 |
AAA domain; This AAA domain is found in a wide variety of presumed DNA repair proteins. |
16-201 |
2.13e-04 |
|
AAA domain; This AAA domain is found in a wide variety of presumed DNA repair proteins.
Pssm-ID: 463892 [Multi-domain] Cd Length: 193 Bit Score: 41.60 E-value: 2.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 16 PARKNWLgkttehvhaINGIdlqIRRGETLGIVGESGCGKSTLA-QLLMGMLQ--PSHGQYIRSGSQRIMQMVFQDPLSS 92
Cdd:pfam13481 19 PPPRRWL---------IKGL---LPAGGLGLLAGAPGTGKTTLAlDLAAAVATgkPWLGGPRVPEQGKVLYVSAEGPADE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 93 LNPRLPVWRiiteplwiakrsseQQRRALAEELAVQVG--IRPEYLDRLPHAFSGGQRQRIAIARAlSSQPDVIVLDEPT 170
Cdd:pfam13481 87 LRRRLRAAG--------------ADLDLPARLLFLSLVesLPLFFLDRGGPLLDADVDALEAALEE-VEDPDLVVIDPLA 151
|
170 180 190
....*....|....*....|....*....|....*.
gi 16129442 171 SALDISVQA-----QILNLLVTLQENHGLTYVLISH 201
Cdd:pfam13481 152 RALGGDENSnsdvgRLVKALDRLARRTGATVLLVHH 187
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
32-174 |
2.28e-04 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 42.69 E-value: 2.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 32 INGIDLQIRRGETLGIVGESGCGKSTLAQLLMGmlqpSHGQ-YI--------RSGS--------QRI------MQMVFQD 88
Cdd:PRK10938 276 LHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG----DHPQgYSndltlfgrRRGSgetiwdikKHIgyvsssLHLDYRV 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 89 PLSSLNPrlpvwrIIT---EPLWIAKRSSEQQRRaLAEELAVQVGIRPEYLDRLPHAFSGGQrQRIA-IARALSSQPDVI 164
Cdd:PRK10938 352 STSVRNV------ILSgffDSIGIYQAVSDRQQK-LAQQWLDILGIDKRTADAPFHSLSWGQ-QRLAlIVRALVKHPTLL 423
|
170
....*....|
gi 16129442 165 VLDEPTSALD 174
Cdd:PRK10938 424 ILDEPLQGLD 433
|
|
| AAA_16 |
pfam13191 |
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
41-199 |
2.80e-04 |
|
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 433025 [Multi-domain] Cd Length: 167 Bit Score: 40.95 E-value: 2.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 41 RGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQRIMQMVfqdPLSSLNPRLPVWRIITEPLwiAKRSSEQQRRA 120
Cdd:pfam13191 23 RPPSVLLTGEAGTGKTTLLRELLRALERDGGYFLRGKCDENLPYS---PLLEALTREGLLRQLLDEL--ESSLLEAWRAA 97
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16129442 121 LAEELAVQVGIRPEYLDRLPHAFsggqrQRIAIARALSSQPDVIVLDEptsaLDISVQAQiLNLLVTLQENHGLTYVLI 199
Cdd:pfam13191 98 LLEALAPVPELPGDLAERLLDLL-----LRLLDLLARGERPLVLVLDD----LQWADEAS-LQLLAALLRLLESLPLLV 166
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
127-234 |
4.49e-04 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 41.92 E-value: 4.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 127 VQVGIRPEYLDRLPHAFSGGQRQRIAIARALSSQ-PDVI-VLDEPTSALDISVQAQILNLLVTLQeNHGLTYVLISHNVS 204
Cdd:TIGR00630 473 IDVGLDYLSLSRAAGTLSGGEAQRIRLATQIGSGlTGVLyVLDEPSIGLHQRDNRRLINTLKRLR-DLGNTLIVVEHDED 551
|
90 100 110
....*....|....*....|....*....|....*.
gi 16129442 205 VIRHmSDRV------AVMYLGQIVELGDAQQVLTAP 234
Cdd:TIGR00630 552 TIRA-ADYVidigpgAGEHGGEVVASGTPEEILANP 586
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
102-202 |
5.34e-04 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 40.04 E-value: 5.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 102 IITEPLWIAKRSSEQQRRALAEELAVQVG-IRPEYLDRLPHAfSGGQRQRIAIARALSSQP----DVIVLDEPTSALDIS 176
Cdd:cd03227 37 ILDAIGLALGGAQSATRRRSGVKAGCIVAaVSAELIFTRLQL-SGGEKELSALALILALASlkprPLYILDEIDRGLDPR 115
|
90 100
....*....|....*....|....*.
gi 16129442 177 VQAQILNLLVtLQENHGLTYVLISHN 202
Cdd:cd03227 116 DGQALAEAIL-EHLVKGAQVIVITHL 140
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
23-174 |
1.01e-03 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 40.88 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 23 GKTTehvhAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMG---------------MLQPSHGqyiRSGSQRIMQMvfq 87
Cdd:NF033858 12 GKTV----ALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGarkiqqgrvevlggdMADARHR---RAVCPRIAYM--- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129442 88 dP--L-SSLNPRLPVwriiTEPLWIAKR---SSEQQRRALAEELAVQVGIRPeYLDRLPHAFSGGQRQRIAIARALSSQP 161
Cdd:NF033858 82 -PqgLgKNLYPTLSV----FENLDFFGRlfgQDAAERRRRIDELLRATGLAP-FADRPAGKLSGGMKQKLGLCCALIHDP 155
|
170
....*....|...
gi 16129442 162 DVIVLDEPTSALD 174
Cdd:NF033858 156 DLLILDEPTTGVD 168
|
|
| FliI |
COG1157 |
Flagellar biosynthesis/type III secretory pathway ATPase FliI [Cell motility, Intracellular ... |
29-66 |
1.34e-03 |
|
Flagellar biosynthesis/type III secretory pathway ATPase FliI [Cell motility, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440771 [Multi-domain] Cd Length: 433 Bit Score: 40.01 E-value: 1.34e-03
10 20 30
....*....|....*....|....*....|....*...
gi 16129442 29 VHAINGIdLQIRRGETLGIVGESGCGKSTlaqlLMGML 66
Cdd:COG1157 145 VRAIDGL-LTVGRGQRIGIFAGSGVGKST----LLGMI 177
|
|
| ATPase_flagellum-secretory_path_III |
cd01136 |
Flagellum-specific ATPase/type III secretory pathway virulence-related protein; ... |
29-66 |
5.94e-03 |
|
Flagellum-specific ATPase/type III secretory pathway virulence-related protein; Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton-driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Pssm-ID: 410880 [Multi-domain] Cd Length: 265 Bit Score: 37.54 E-value: 5.94e-03
10 20 30
....*....|....*....|....*....|....*...
gi 16129442 29 VHAINGIdLQIRRGETLGIVGESGCGKSTlaqlLMGML 66
Cdd:cd01136 55 VRAIDGL-LTCGEGQRIGIFAGSGVGKST----LLGMI 87
|
|
|