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Conserved domains on  [gi|16129463|ref|NP_416021|]
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putative fimbrial protein YdeS [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

fimbrial protein( domain architecture ID 10007530)

fimbrial protein similar to Escherichia coli fimbrial adapter PapF, which is required for the correct presentation of the PapG adhesin at the distal end of the tip fibrillum

Gene Ontology:  GO:0009289|GO:0007155
PubMed:  1670938|22411982|2890081

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
1-176 2.46e-47

Pilin (type 1 fimbrial protein) [Cell motility];


:

Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 152.12  E-value: 2.46e-47
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129463   1 MKyNNIIFLGLCLGLTTYSALSADSVIKISGRVLDYGCTVSSDSLNFTVDLQKNSARQFPTTGSTSPAVPFQITLSECSK 80
Cdd:COG3539   1 MK-KLLLALLLALALSAAAAAAADGTVNFTGTVVAPTCTINTGSKDQTVDLGTVSTSDLNGVGSTSGPKPFSIKLTNCDA 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129463  81 GTTG-VRVAFNGIEDAENNTLLKLDeGSNTASGLGIEILDANMRPVKLNDlhaGMQWIPLVPEQNNILPYSARLKSTQKS 159
Cdd:COG3539  80 GTSNsVKVTFTGTADSANPGLLANT-GSGGASGVGIQLLDSDGTPIPLGT---PSSAVTLTSNGSATLPFYARYVATGAT 155

                       170
                ....*....|....*..
gi 16129463 160 VNPGLVRASATFTLEFQ 176
Cdd:COG3539 156 VTAGSFNATATFTIDYQ 172
 
Name Accession Description Interval E-value
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
1-176 2.46e-47

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 152.12  E-value: 2.46e-47
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129463   1 MKyNNIIFLGLCLGLTTYSALSADSVIKISGRVLDYGCTVSSDSLNFTVDLQKNSARQFPTTGSTSPAVPFQITLSECSK 80
Cdd:COG3539   1 MK-KLLLALLLALALSAAAAAAADGTVNFTGTVVAPTCTINTGSKDQTVDLGTVSTSDLNGVGSTSGPKPFSIKLTNCDA 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129463  81 GTTG-VRVAFNGIEDAENNTLLKLDeGSNTASGLGIEILDANMRPVKLNDlhaGMQWIPLVPEQNNILPYSARLKSTQKS 159
Cdd:COG3539  80 GTSNsVKVTFTGTADSANPGLLANT-GSGGASGVGIQLLDSDGTPIPLGT---PSSAVTLTSNGSATLPFYARYVATGAT 155

                       170
                ....*....|....*..
gi 16129463 160 VNPGLVRASATFTLEFQ 176
Cdd:COG3539 156 VTAGSFNATATFTIDYQ 172
PRK15194 PRK15194
type 1 fimbrial protein subunit FimA;
1-176 5.20e-22

type 1 fimbrial protein subunit FimA;


Pssm-ID: 237920  Cd Length: 185  Bit Score: 87.70  E-value: 5.20e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129463    1 MKYNNIIFLGLCLGLTTYSALSADSV--------IKISGRVLDYGCTVSSDSLNFTVDLQKNSARQFPTTGSTSPAVPFQ 72
Cdd:PRK15194   1 MKLRFISSAIASLLFVAGAAYAADPTpvsvdggtIHFEGELVNAACSVNTDSADQTVTLGQYRTAIFTAVGNTTALIPFT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129463   73 ITLSECS-KGTTGVRVAFNGIEDAENNTLLKLDEGSN--TASGLGIEILDANMRPVKL--NDLHAGMQWIplvpEQNNIL 147
Cdd:PRK15194  81 IQLNDCDpVVAATAAVAFSGQADATNDNLLAVASSTNttTATGVGIEILDNTSSILKPdgATFSANQNLI----EGTNTL 156

                        170       180
                 ....*....|....*....|....*....
gi 16129463  148 PYSARLKSTQKSVNPGLVRASATFTLEFQ 176
Cdd:PRK15194 157 HFSARYKATGTSASAGQANADATFIMKYE 185
Fimbrial pfam00419
Fimbrial protein;
38-176 1.02e-15

Fimbrial protein;


Pssm-ID: 425671  Cd Length: 152  Bit Score: 70.16  E-value: 1.02e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129463    38 CTVSSDSLNfTVDLQKNSARQFPTTGSTSPAVPFQITLsECSKGTTGVR--VAFNGIEDAENNTLLKLDEGSNTASGLGI 115
Cdd:pfam00419  14 CKITAGTPI-EVDFGQIPVNELNAGGEGSRQKPFSITL-ECSSGSSAVKvtVGLFGTADASSPNLLLTGNGAGAATGVGI 91

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16129463   116 EILDANMRPVKLNDLHAGMQWIPlVPEQNNILPYSARLKST-QKSVNPGLVRASATFTLEFQ 176
Cdd:pfam00419  92 RLYDANGGALPPNNGTSSIPVSA-TAAVATGITFTASLVATtGGTPTAGDFNATATIVVDYQ 152
 
Name Accession Description Interval E-value
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
1-176 2.46e-47

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 152.12  E-value: 2.46e-47
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129463   1 MKyNNIIFLGLCLGLTTYSALSADSVIKISGRVLDYGCTVSSDSLNFTVDLQKNSARQFPTTGSTSPAVPFQITLSECSK 80
Cdd:COG3539   1 MK-KLLLALLLALALSAAAAAAADGTVNFTGTVVAPTCTINTGSKDQTVDLGTVSTSDLNGVGSTSGPKPFSIKLTNCDA 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129463  81 GTTG-VRVAFNGIEDAENNTLLKLDeGSNTASGLGIEILDANMRPVKLNDlhaGMQWIPLVPEQNNILPYSARLKSTQKS 159
Cdd:COG3539  80 GTSNsVKVTFTGTADSANPGLLANT-GSGGASGVGIQLLDSDGTPIPLGT---PSSAVTLTSNGSATLPFYARYVATGAT 155

                       170
                ....*....|....*..
gi 16129463 160 VNPGLVRASATFTLEFQ 176
Cdd:COG3539 156 VTAGSFNATATFTIDYQ 172
PRK15194 PRK15194
type 1 fimbrial protein subunit FimA;
1-176 5.20e-22

type 1 fimbrial protein subunit FimA;


Pssm-ID: 237920  Cd Length: 185  Bit Score: 87.70  E-value: 5.20e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129463    1 MKYNNIIFLGLCLGLTTYSALSADSV--------IKISGRVLDYGCTVSSDSLNFTVDLQKNSARQFPTTGSTSPAVPFQ 72
Cdd:PRK15194   1 MKLRFISSAIASLLFVAGAAYAADPTpvsvdggtIHFEGELVNAACSVNTDSADQTVTLGQYRTAIFTAVGNTTALIPFT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129463   73 ITLSECS-KGTTGVRVAFNGIEDAENNTLLKLDEGSN--TASGLGIEILDANMRPVKL--NDLHAGMQWIplvpEQNNIL 147
Cdd:PRK15194  81 IQLNDCDpVVAATAAVAFSGQADATNDNLLAVASSTNttTATGVGIEILDNTSSILKPdgATFSANQNLI----EGTNTL 156

                        170       180
                 ....*....|....*....|....*....
gi 16129463  148 PYSARLKSTQKSVNPGLVRASATFTLEFQ 176
Cdd:PRK15194 157 HFSARYKATGTSASAGQANADATFIMKYE 185
PRK15209 PRK15209
long polar fimbrial protein LpfA; Provisional
 6-176 6.23e-21

long polar fimbrial protein LpfA; Provisional


Pssm-ID: 185131 [Multi-domain]  Cd Length: 174  Bit Score: 84.25  E-value: 6.23e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129463    6 IIFLGLCLGLTTYSALSADS---VIKISGRVLDYGCTVSSDSLNFTVDLQKNSARQFPTTGSTSPAVPFQITLSECSKGT 82
Cdd:PRK15209   4 VVFALSALALTSTSVFAAESgdgTVKFTGEIVDAPCVVSTDSQNQEVVLGQVKKSVFKAIGDKSSAKPFQIKLEDCDITT 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129463   83 -TGVRVAFNGIEDAENNTLLKLDEGSNTASGLGIEILDANMRPVKLNdlhaGMQWIPLVPEQNNILPYSARLKSTQKSVN 161
Cdd:PRK15209  84 nKKVNVSFNGVGDADDSTLVSVSTEAGAATGVGIGIYDNANTLVELN----TGKSTTTLAAGQTVLYFTANYVSTKDTVT 159

                        170
                 ....*....|....*
gi 16129463  162 PGLVRASATFTLEFQ 176
Cdd:PRK15209 160 TGYGNAEVDFNLSYE 174
PRK15191 PRK15191
fimbrial protein BcfF; Provisional
 5-176 8.85e-19

fimbrial protein BcfF; Provisional


Pssm-ID: 185113 [Multi-domain]  Cd Length: 172  Bit Score: 78.61  E-value: 8.85e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129463    5 NIIFLGLCLGLTTYSALSADSVIKISGRVLDYGCTVSSDSLNFTVDLQKNSARQFPTTGSTSPAVPFQITLSECSKGTTG 84
Cdd:PRK15191   3 NDILYGIGMLLAASGVQAHDGRVYVSGTITDNTCSLSPGSENINVAMGAVSQRQFYRAGDGSAWQPFAIDLQNCGSTASG 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129463   85 VRVAFNGIEDAENNTLLKLDEGSNTASGLGIEILDANMRPVKLNDlhaGMQWIPLVPEQNNI-LPYSARLKSTQKSVNPG 163
Cdd:PRK15191  83 VTVSFSGAADSRNTDLLALTAGESDASGIGIALYDQNKTLIPLGQ---ESDVVTLSPGQASAhLQFYARYLADGGAVTPG 159

                        170
                 ....*....|...
gi 16129463  164 LVRASATFTLEFQ 176
Cdd:PRK15191 160 DANASATFILAYE 172
PRK09934 PRK09934
fimbriae assembly protein;
6-175 1.12e-17

fimbriae assembly protein;


Pssm-ID: 182153 [Multi-domain]  Cd Length: 171  Bit Score: 75.70  E-value: 1.12e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129463    6 IIFLGLCLGLTTYSALSADSV----IKISGRVLDYGCTVSSDSLNFTVDLQKNSARQFPTTGSTSPAVPFQITLSECSKG 81
Cdd:PRK09934   4 VFFACFCGLLWSPLSWAADPLgeinIELHGNVVDFTCTVNTADSDKTVDLGTWPTKQLLNAGDTTQPVPFSLKLEGCPPG 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129463   82 TtgVRVAFNGIeDAENNTLLKLDEGSnTASGLGIEILDANMRPVKLNDlhaGMQWIPLVPEQNNILPYSARLKSTQKSVN 161
Cdd:PRK09934  84 S--ASITFTGT-PASDTNLLALDDPA-MAQTVAIEIRDSDRSRLALGQ---ASPTVEVDANGNATLNFYANYIALADGVQ 156

                        170
                 ....*....|....
gi 16129463  162 PGLVRASATFTLEF 175
Cdd:PRK09934 157 PGVAKADATFMINY 170
PRK15190 PRK15190
fimbrial protein BcfE; Provisional
 22-176 4.93e-17

fimbrial protein BcfE; Provisional


Pssm-ID: 185112  Cd Length: 181  Bit Score: 74.35  E-value: 4.93e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129463   22 SADSV---IKISGRVLDYGCTVSSDSLNFTVDLQKNSARQFPTTGSTSPAVPFQITLSECSKGTTGVRVAFNGIEDAENN 98
Cdd:PRK15190  22 SADDLaynLEFTGTIVAQTCDIDISSLSQSIDLGQFAVGDFPSTGTTTKFKPFNINLKNCSRGIAGAKIWFTGEPDPDNP 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129463   99 TLLKLDE-----GSNTASGLGIEILDANMRPVKLNDLHAGMqwIPLVPEQNNiLPYSARLKSTQKSVNPGLVRASATFTL 173
Cdd:PRK15190 102 ALLAITDtgmgsGNMLASGVGVEILNDDQDTISINNADSVV--YPLKAGRNT-LSFYIRYKSTRPTVTSGNATAVMYFDM 178


                 ...
gi 16129463  174 EFQ 176
Cdd:PRK15190 179 QYE 181
PRK15300 PRK15300
fimbrial protein StiA; Provisional
 22-175 1.54e-16

fimbrial protein StiA; Provisional


Pssm-ID: 185200  Cd Length: 179  Bit Score: 73.21  E-value: 1.54e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129463   22 SADSVIKISGRVLDYGCTVSSDSLNFTvdLQKNSARQFPTTGSTSPAVPFQITLSECSKGT-TGVRVAFNGIEDAENNTL 100
Cdd:PRK15300  26 AKDGTVHITGLIKQNACTVKTDSVEVT--LQEEFASLFTAAGQTAGDTDFTIELENCDANVySSVQARFEGTLDGTDATI 103

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16129463  101 LKlDEGSntASGLGIEILDANMRPVKLNDLHAGMQWIPLVPEQNNI---LPYSARLKSTQKSVNPGLVRASATFTLEF 175
Cdd:PRK15300 104 LK-NEDD--AENIGVQILDKTSTPMTFNDLQAWSAAVALPTAEGVTelsMPFTARYIATAVPVKSGTVDATATFYLQY 178
Fimbrial pfam00419
Fimbrial protein;
38-176 1.02e-15

Fimbrial protein;


Pssm-ID: 425671  Cd Length: 152  Bit Score: 70.16  E-value: 1.02e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129463    38 CTVSSDSLNfTVDLQKNSARQFPTTGSTSPAVPFQITLsECSKGTTGVR--VAFNGIEDAENNTLLKLDEGSNTASGLGI 115
Cdd:pfam00419  14 CKITAGTPI-EVDFGQIPVNELNAGGEGSRQKPFSITL-ECSSGSSAVKvtVGLFGTADASSPNLLLTGNGAGAATGVGI 91

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16129463   116 EILDANMRPVKLNDLHAGMQWIPlVPEQNNILPYSARLKST-QKSVNPGLVRASATFTLEFQ 176
Cdd:pfam00419  92 RLYDANGGALPPNNGTSSIPVSA-TAAVATGITFTASLVATtGGTPTAGDFNATATIVVDYQ 152
lpfA PRK15289
fimbrial protein; Provisional
 20-176 1.74e-15

fimbrial protein; Provisional


Pssm-ID: 185189  Cd Length: 190  Bit Score: 70.37  E-value: 1.74e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129463   20 ALSADSVIKISGRVLDYGCTVSSDSLNFTVDLQKNSARQFPTTGSTSPAVPFQITLSECSKGTTGVRVAFNGIEDAENNT 99
Cdd:PRK15289  21 ALAEDGVVHFVGEIVDTTCEVTSDTADQIVPLGKVSKNAFSGVGSLASPQKFSIKLENCPATYTQAAVRFDGTEAPGGDG 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129463  100 LLKL--------------DEGSNTASGLGIEILD-ANMRPVKLNDLHAgmqWIPLVPEQNNILPYSARLKSTQKSVNPGL 164
Cdd:PRK15289 101 DLKVgtpltagnpgdftgTGQAIAATGVGIRIFNqSDNSQVKLYNDSA---YTAIDAEGKAEMKFIARYVATNATVTAGT 177

                        170
                 ....*....|..
gi 16129463  165 VRASATFTLEFQ 176
Cdd:PRK15289 178 ANADSQFTVEYK 189
PRK15260 PRK15260
fimbrial protein SteF; Provisional
 22-176 4.25e-14

fimbrial protein SteF; Provisional


Pssm-ID: 185168  Cd Length: 178  Bit Score: 66.64  E-value: 4.25e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129463   22 SADSVIKISGRVLDYGCT--VSSDSLNfTVDLQKNSARQFPTTGSTSPaVPFQITLSECSKG-TTGVRVAFNGIEDAENN 98
Cdd:PRK15260  26 AATPNVHYSGKLVAGACNlvVDNDTMA-TVDFHTIGSDNFDASGQTTP-VPFTLSLQDCKTAlANGVLVTFQGVEDSTLP 103

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16129463   99 TLLKLdEGSNTASGLGIEILDANMRPVKLNDLHaGMQWIplVPEQNNILPYSARL-KSTQKSVNPGLVRASATFTLEFQ 176
Cdd:PRK15260 104 GLLAL-EPSSEASGFAIGVETAAQQPVSINATV-GTAFV--LKEGITTINLQARLqKYAGEEVMPGEFSGSATVSFEYQ 178
PRK15296 PRK15296
fimbrial protein SthA;
7-176 1.13e-13

fimbrial protein SthA;


Pssm-ID: 185196  Cd Length: 181  Bit Score: 65.50  E-value: 1.13e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129463    7 IFLGLCLGLTTYSALSADSV-----IKISGRVLDYGCTVSSD-SLNFTVDLQKNSARQFPTTGSTSPAVPFQITLSECSK 80
Cdd:PRK15296   1 MFNKKIIILAMLTAVASTPVfaqntITFNGKIYDQACTVQVNgSTDTTIDLGNYSKERIAEKGATTDYVPFTVSLVSCPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129463   81 GTTGV----RVAFNGIEDAENNTLLK-LDEGSNT-ASGLGIEILDANMRPVKLNDLHAGMQwIPLVPEQNNILPYSARLK 154
Cdd:PRK15296  81 AGTGVptqaMFRFHGATDDSNPTYFKnADEGSETgAAGVGISIQNASHSDVTDNTDDAAVN-LPTDGSTADFTYYAAMAN 159

                        170       180
                 ....*....|....*....|..
gi 16129463  155 STQKSVNPGLVRASATFTLEFQ 176
Cdd:PRK15296 160 DGSATVTGGDVSTQVTYTVSYQ 181
PRK15200 PRK15200
type 1 fimbrial protein subunit FimI;
11-173 4.56e-13

type 1 fimbrial protein subunit FimI;


Pssm-ID: 185122  Cd Length: 177  Bit Score: 63.72  E-value: 4.56e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129463   11 LCLGLTTYSALSADSVIKISGRV------LDYGCTVSSDSLNFTVDLQKNSARQFPTTGSTSP-AVPFQITLSECSKGTT 83
Cdd:PRK15200   7 ALVGLVLMSPVIAQPVMVESGRVhlrgqlVNGGCAVATESQDLRVLMGQYRTNAFTGPGSFAPvSVPFSLRLISCSAEVW 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129463   84 G-VRVAFNGIEDAEN-NTLLKLDEGSNTaSGLGIEILDANMRPVKLNDLhaGMQWIPLVpEQNNILPYSARLKSTQKSVN 161
Cdd:PRK15200  87 RhVGIAFAGVTPAEDpHVFLASGEGIGN-AGIGLALFDDQQRQIIPNTL--PLHYAPIL-TSEMTLHFTARYRAISENMT 162

                        170
                 ....*....|..
gi 16129463  162 PGLVRASATFTL 173
Cdd:PRK15200 163 PGRIHSEVWFTL 174
PRK09733 PRK09733
fimbrial-like protein;
26-176 1.77e-08

fimbrial-like protein;


Pssm-ID: 182053  Cd Length: 181  Bit Score: 51.49  E-value: 1.77e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129463   26 VIKISGRVLDYGCTVSSDSLNFTVDLQKnSARQFPTTGSTSPAVPFQITLSEC--SKGTT---GVRVAFNGIE-DAENNT 99
Cdd:PRK09733  27 IVKFKGEVISAPCSIKPGDEDLTVNLGE-VADTVLKSDQKSLAEPFTIHLQDCmlSQGGTtysKAKVTFTTANtMTGQSD 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129463  100 LLK--LDEGSNTASGLGIEILDANMRPVKLndlhaGMQWIPLVPEQNNI--LPYSARLKSTQKSVNPGLVRASATFTLEF 175
Cdd:PRK09733 106 LLKntKETEIGGATGVGVRILDSQSGEVTL-----GTPVVITFNNTNSYqeLNFKARMESPSKDATPGNVYAQADYKIAY 180


                 .
gi 16129463  176 Q 176
Cdd:PRK09733 181 E 181
PRK15293 PRK15293
fimbrial protein SthD;
8-176 2.34e-07

fimbrial protein SthD;


Pssm-ID: 185193  Cd Length: 185  Bit Score: 48.52  E-value: 2.34e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129463    8 FLGLCLGLTTYSAL--SADSV-IKISGRVLDYGCTVSSDSlnfTVDLQKNSARQFPTTGSTSPAVPFQITLSECSKGTTG 84
Cdd:PRK15293  15 FTGLALWSPSISAAynTADAVdINVTGLIYADPCTVTVPD---TLSLGQYARADIAVAGGNTATIPFTIKMTNCPATTTK 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129463   85 VRVAFNGI--EDAENNTLLKLDEGSNTASGLGIEILDANMRPvkLNDLHAGMQWIplVPEQNN----ILPYSARLKSTQK 158
Cdd:PRK15293  92 AAISFNGVpyPDPNYASAIYANSAANPAQDLGLQLFNLDGKS--LVNLANNVTYT--VDINSNtheaNLPVAARMYTPYG 167

                        170
                 ....*....|....*...
gi 16129463  159 SVNPGLVRASATFTLEFQ 176
Cdd:PRK15293 168 KVTAGDFTSVVTITIAWQ 185
PRK15210 PRK15210
fimbrial protein;
27-175 7.65e-07

fimbrial protein;


Pssm-ID: 185132  Cd Length: 194  Bit Score: 47.00  E-value: 7.65e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129463   27 IKISGRVLDYGCTVSSDSLNFTVDLQKNSARQFPTTGSTSPAVPFQITLSECS--------KGTTG----VRVAFNGIED 94
Cdd:PRK15210  37 ILFTGTITNSPCDIAPGDDAITVPFGQISYRKLNTADATTESKPFTIHLQNCAfdpnipdtAGSAGkmskVTVSFSGTAN 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129463   95 AENntllKLDEGSNTASGLGIEILDAN----------MRPVKLNDLHAGmqwiplvpeqNNILPYSARLKSTQKSVNPGL 164
Cdd:PRK15210 117 TSK----KAYTTSGSAQHVGVQLLKSDntsiiepntpMPDGDAQQLQAG----------NNELNFFARLIALDNGVTPGD 182

                        170
                 ....*....|.
gi 16129463  165 VRASATFTLEF 175
Cdd:PRK15210 183 FNASVTYTLKY 193
PRK15187 PRK15187
fimbrial protein BcfA; Provisional
 6-175 3.00e-05

fimbrial protein BcfA; Provisional


Pssm-ID: 185109  Cd Length: 180  Bit Score: 42.50  E-value: 3.00e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129463    6 IIFLGLCLGLTTYSALSADSVIKISGRVLDYGCTVSSDSLNFTVDLQKNSARQFPTTG-STSPAVPFQITLSECSKGTT- 83
Cdd:PRK15187  13 IAFGGMLSTAQADTTTVTGGTVNFVGQVVDAACSVSADSVDQTVTLGQVRASKLTEAGmVANQKEDFTIKLEDCDTQTSq 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129463   84 GVRVAFNGIEDAENNTLLKLDEGSNTASGLGIEILDANMRPVKLNDLHAGMQwiplVPEQNNILPYSARLKSTqKSVNPG 163
Cdd:PRK15187  93 NAAVIFNGQQDANQPGSLANTAGAGSATNVALQLYGPDGQALNIGESSSTVT----LNDGENVIPLSVDYIAT-GTATAG 167

                        170
                 ....*....|..
gi 16129463  164 LVRASATFTLEF 175
Cdd:PRK15187 168 NVTATATFSMVY 179
PRK15288 PRK15288
putative minor fimbrial subunit StfG; Provisional
 21-175 9.90e-04

putative minor fimbrial subunit StfG; Provisional


Pssm-ID: 185188 [Multi-domain]  Cd Length: 176  Bit Score: 38.09  E-value: 9.90e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129463   21 LSADSVIKISGRVLDYGCTVSSDSLNFT-VDLQKNSARQFpTTGSTSPAVPFQITLSEC-SKGTTGVRVAFNGIEDAENN 98
Cdd:PRK15288  23 VSAADNLHFSGSLVASPCTLTMQGTGIAeVDFSSLDSSDF-TPDGQSARKPLVFELTDCdSALSNGVQVTFTGTEATGMR 101

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16129463   99 TLLKLDEGSNtASGLGIEILDANMRPVKLNDLHAGMqwIPLVPEQNNILPYSARLKSTQKSVNPGLVRASATFTLEF 175
Cdd:PRK15288 102 GILAIDSYSG-ASGIGIGIETLSGVPVGMNDEEGAI--FTLVTGKNTLSLNAWVQRLPGEDLIPGRFSASALATFEY 175
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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