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Conserved domains on  [gi|16129724|ref|NP_416284|]
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putative DNA-binding transcriptional regulator YdjF [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

DeoR/GlpR family DNA-binding transcription regulator( domain architecture ID 11442564)

DeoR/GlpR family DNA-binding transcription regulator is a helix-turn-helix type transcriptional regulator that may be involved in sugar metabolism

Gene Ontology:  GO:0003700|GO:0003677
PubMed:  15808743

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GlpR COG1349
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, ...
 1-251 2.98e-94

DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism];


:

Pssm-ID: 440960 [Multi-domain]  Cd Length: 254  Bit Score: 277.02  E-value: 2.98e-94
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129724   1 MAAKDRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGAVLNTAMLTEnIHFYKRASSFYEEK 80
Cdd:COG1349   1 MLAEERRQKILELLRERGRVSVEELAERLGVSEETIRRDLAELEEQGLLRRVHGGAVLVSSAAAE-PPFAERETLNAEEK 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129724  81 QLIARKALPFIDNKTTMAADSSSTVMELLKLLQDRSGLTLLTNSAEAIHVLAQ-SEIKVVSTGGELNKNTLSLQGRITKE 159
Cdd:COG1349  80 RAIARAAASLIEDGDTIFLDAGTTTLALARALPDRRNLTVVTNSLNIANELAErPNIEVILLGGELRPSSGSLVGPLAEE 159

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129724 160 IIRRYHVDIMVMSCKGLDINSGALDSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFVQLADFSHINYIITDKSPGAEW 239
Cdd:COG1349 160 ALRRFRADKAFLGASGIDAEGGLTTFDEEEAEVKRAMIEAARRVILLADSSKFGRRALARVAPLSEIDVLITDAGPPPEL 239

                       250
                ....*....|..
gi 16129724 240 IAFCKDNNIQLV 251
Cdd:COG1349 240 LEALEEAGVEVI 251
 
Name Accession Description Interval E-value
GlpR COG1349
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, ...
 1-251 2.98e-94

DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism];


Pssm-ID: 440960 [Multi-domain]  Cd Length: 254  Bit Score: 277.02  E-value: 2.98e-94
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129724   1 MAAKDRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGAVLNTAMLTEnIHFYKRASSFYEEK 80
Cdd:COG1349   1 MLAEERRQKILELLRERGRVSVEELAERLGVSEETIRRDLAELEEQGLLRRVHGGAVLVSSAAAE-PPFAERETLNAEEK 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129724  81 QLIARKALPFIDNKTTMAADSSSTVMELLKLLQDRSGLTLLTNSAEAIHVLAQ-SEIKVVSTGGELNKNTLSLQGRITKE 159
Cdd:COG1349  80 RAIARAAASLIEDGDTIFLDAGTTTLALARALPDRRNLTVVTNSLNIANELAErPNIEVILLGGELRPSSGSLVGPLAEE 159

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129724 160 IIRRYHVDIMVMSCKGLDINSGALDSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFVQLADFSHINYIITDKSPGAEW 239
Cdd:COG1349 160 ALRRFRADKAFLGASGIDAEGGLTTFDEEEAEVKRAMIEAARRVILLADSSKFGRRALARVAPLSEIDVLITDAGPPPEL 239

                       250
                ....*....|..
gi 16129724 240 IAFCKDNNIQLV 251
Cdd:COG1349 240 LEALEEAGVEVI 251
DeoRC pfam00455
DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive ...
 75-233 1.83e-59

DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive versions of the ISOCOT fold, but retain the substrate binding site. DeorC senses diverse sugar derivatives such as deoxyribose nucleoside (DeoR), tagatose phosphate (LacR), galactosamine (AgaR), myo-inositol (Bacillus IolR) and L-ascorbate (UlaR). It can also bind L-ascorbate 6-phosphate, agrocinopines, sn-glycerol 3-phosphate, and sulfoquinovose (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).


Pssm-ID: 395365  Cd Length: 160  Bit Score: 185.41  E-value: 1.83e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129724    75 SFYEEKQLIARKALPFIDNKTTMAADSSSTVMELLKLLQDRSGLTLLTNSAEAIHVLAQSE-IKVVSTGGELNKNTLSLQ 153
Cdd:pfam00455   1 ENAEEKRRIAKAAASLIEDGDTIFLDAGTTTLELARALPDRRNLTVITNSLNIANELSEKPdIEVILLGGEVRPKTGAFV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129724   154 GRITKEIIRRYHVDIMVMSCKGLDINSGALDSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFVQLADFSHINYIITDK 233
Cdd:pfam00455  81 GPLAEEFLRQFNVDKAFIGANGIDLEGGLTTSDEEEAEVKRAMIEAARRVILLADSSKFGKRAFARFAPLEDIDALITDK 160
PRK10411 PRK10411
L-fucose operon activator;
6-237 3.13e-36

L-fucose operon activator;


Pssm-ID: 236684 [Multi-domain]  Cd Length: 240  Bit Score: 128.38  E-value: 3.13e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129724    6 RIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGAvlnTAMLTENIH----FYKRASSFYEEKQ 81
Cdd:PRK10411   5 RQQAIVDLLLNHTSLTTEALAEQLNVSKETIRRDLNELQTQGKILRNHGRA---KYIHRQNQDsgdpFHIRLKSHYAHKA 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129724   82 LIARKALPFIDNKTTMAADSSSTVMELLKLLQDRSgLTLLTNSAEAIHVLAQSE-IKVVSTGGELNKNTLSLQGRITKEI 160
Cdd:PRK10411  82 DIAREALAWIEEGMVIALDASSTCWYLARQLPDIN-IQVFTNSHPICQELGKRErIQLISSGGTLERKYGCYVNPSLISQ 160

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16129724  161 IRRYHVDIMVMSCKGLDiNSGAL-DSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFVQLADFSHINYIITDKSPGA 237
Cdd:PRK10411 161 LKSLEIDLFIFSCEGID-SSGALwDSNAINADYKSMLLKRAAQSLLLIDKSKFNRSGEARIGHLDEVTHIISDERQVA 237
AgaR NF040755
transcriptional repressor AgaR;
1-233 3.96e-35

transcriptional repressor AgaR;


Pssm-ID: 468715 [Multi-domain]  Cd Length: 256  Bit Score: 125.85  E-value: 3.96e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129724    1 MAAKDRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGAVLNTAMLTENIHFYKRASSFYEE- 79
Cdd:NF040755   2 KGTSERREQIIQRLRQQGSVQVEDLSALFGVSTVTIRNDLAFLEKQGIAVRAYGGALINDGFIPGAEPSVEDKSRLNTAv 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129724   80 KQLIARKALPFIDNKTTMAADSSSTVMELLKLLQDRSGLTLLTNSAEAIHVLAQSE-IKVVSTGGELNKNTLSLQGRITK 158
Cdd:NF040755  82 KRLIAAAAAELIKPGDRVILDSGTTTYEIARHLKQHQDVVVMTNGLNVANELLEAEgVEVLMTGGHLRRQSLSFYGDQAE 161

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16129724  159 EIIRRYHVDIMVMSCKGLDINSGALDSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFVQLADFSHINYIITDK 233
Cdd:NF040755 162 QSLQNYHFDKLFLGVDGFDLERGITTHNEDEARLNRRMCEVAERIIAVTDSSKFGRSSLHKIRDTGRIDTLITDS 236
HTH_DEOR smart00420
helix_turn_helix, Deoxyribose operon repressor;
6-58 8.49e-19

helix_turn_helix, Deoxyribose operon repressor;


Pssm-ID: 197714 [Multi-domain]  Cd Length: 53  Bit Score: 77.26  E-value: 8.49e-19
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 16129724      6 RIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGAVL 58
Cdd:smart00420   1 RQQQILELLAQQGKVSVEELAELLGVSEMTIRRDLNKLEEQGLLTRVHGGAVS 53
 
Name Accession Description Interval E-value
GlpR COG1349
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, ...
 1-251 2.98e-94

DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism];


Pssm-ID: 440960 [Multi-domain]  Cd Length: 254  Bit Score: 277.02  E-value: 2.98e-94
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129724   1 MAAKDRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGAVLNTAMLTEnIHFYKRASSFYEEK 80
Cdd:COG1349   1 MLAEERRQKILELLRERGRVSVEELAERLGVSEETIRRDLAELEEQGLLRRVHGGAVLVSSAAAE-PPFAERETLNAEEK 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129724  81 QLIARKALPFIDNKTTMAADSSSTVMELLKLLQDRSGLTLLTNSAEAIHVLAQ-SEIKVVSTGGELNKNTLSLQGRITKE 159
Cdd:COG1349  80 RAIARAAASLIEDGDTIFLDAGTTTLALARALPDRRNLTVVTNSLNIANELAErPNIEVILLGGELRPSSGSLVGPLAEE 159

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129724 160 IIRRYHVDIMVMSCKGLDINSGALDSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFVQLADFSHINYIITDKSPGAEW 239
Cdd:COG1349 160 ALRRFRADKAFLGASGIDAEGGLTTFDEEEAEVKRAMIEAARRVILLADSSKFGRRALARVAPLSEIDVLITDAGPPPEL 239

                       250
                ....*....|..
gi 16129724 240 IAFCKDNNIQLV 251
Cdd:COG1349 240 LEALEEAGVEVI 251
DeoRC pfam00455
DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive ...
 75-233 1.83e-59

DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive versions of the ISOCOT fold, but retain the substrate binding site. DeorC senses diverse sugar derivatives such as deoxyribose nucleoside (DeoR), tagatose phosphate (LacR), galactosamine (AgaR), myo-inositol (Bacillus IolR) and L-ascorbate (UlaR). It can also bind L-ascorbate 6-phosphate, agrocinopines, sn-glycerol 3-phosphate, and sulfoquinovose (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).


Pssm-ID: 395365  Cd Length: 160  Bit Score: 185.41  E-value: 1.83e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129724    75 SFYEEKQLIARKALPFIDNKTTMAADSSSTVMELLKLLQDRSGLTLLTNSAEAIHVLAQSE-IKVVSTGGELNKNTLSLQ 153
Cdd:pfam00455   1 ENAEEKRRIAKAAASLIEDGDTIFLDAGTTTLELARALPDRRNLTVITNSLNIANELSEKPdIEVILLGGEVRPKTGAFV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129724   154 GRITKEIIRRYHVDIMVMSCKGLDINSGALDSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFVQLADFSHINYIITDK 233
Cdd:pfam00455  81 GPLAEEFLRQFNVDKAFIGANGIDLEGGLTTSDEEEAEVKRAMIEAARRVILLADSSKFGKRAFARFAPLEDIDALITDK 160
PRK10411 PRK10411
L-fucose operon activator;
6-237 3.13e-36

L-fucose operon activator;


Pssm-ID: 236684 [Multi-domain]  Cd Length: 240  Bit Score: 128.38  E-value: 3.13e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129724    6 RIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGAvlnTAMLTENIH----FYKRASSFYEEKQ 81
Cdd:PRK10411   5 RQQAIVDLLLNHTSLTTEALAEQLNVSKETIRRDLNELQTQGKILRNHGRA---KYIHRQNQDsgdpFHIRLKSHYAHKA 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129724   82 LIARKALPFIDNKTTMAADSSSTVMELLKLLQDRSgLTLLTNSAEAIHVLAQSE-IKVVSTGGELNKNTLSLQGRITKEI 160
Cdd:PRK10411  82 DIAREALAWIEEGMVIALDASSTCWYLARQLPDIN-IQVFTNSHPICQELGKRErIQLISSGGTLERKYGCYVNPSLISQ 160

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16129724  161 IRRYHVDIMVMSCKGLDiNSGAL-DSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFVQLADFSHINYIITDKSPGA 237
Cdd:PRK10411 161 LKSLEIDLFIFSCEGID-SSGALwDSNAINADYKSMLLKRAAQSLLLIDKSKFNRSGEARIGHLDEVTHIISDERQVA 237
AgaR NF040755
transcriptional repressor AgaR;
1-233 3.96e-35

transcriptional repressor AgaR;


Pssm-ID: 468715 [Multi-domain]  Cd Length: 256  Bit Score: 125.85  E-value: 3.96e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129724    1 MAAKDRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGAVLNTAMLTENIHFYKRASSFYEE- 79
Cdd:NF040755   2 KGTSERREQIIQRLRQQGSVQVEDLSALFGVSTVTIRNDLAFLEKQGIAVRAYGGALINDGFIPGAEPSVEDKSRLNTAv 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129724   80 KQLIARKALPFIDNKTTMAADSSSTVMELLKLLQDRSGLTLLTNSAEAIHVLAQSE-IKVVSTGGELNKNTLSLQGRITK 158
Cdd:NF040755  82 KRLIAAAAAELIKPGDRVILDSGTTTYEIARHLKQHQDVVVMTNGLNVANELLEAEgVEVLMTGGHLRRQSLSFYGDQAE 161

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16129724  159 EIIRRYHVDIMVMSCKGLDINSGALDSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFVQLADFSHINYIITDK 233
Cdd:NF040755 162 QSLQNYHFDKLFLGVDGFDLERGITTHNEDEARLNRRMCEVAERIIAVTDSSKFGRSSLHKIRDTGRIDTLITDS 236
srlR PRK10434
DNA-binding transcriptional repressor;
1-251 1.48e-34

DNA-binding transcriptional repressor;


Pssm-ID: 182457 [Multi-domain]  Cd Length: 256  Bit Score: 124.41  E-value: 1.48e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129724    1 MAAKDRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGAVLNTAMLTENIHFYKRASSfyEEK 80
Cdd:PRK10434   1 MKPRQRQAAILEYLQKQGKTSVEELAQYFDTTGTTIRKDLVILEHAGTVIRTYGGVVLNKEESDPPIDHKTLINT--HKK 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129724   81 QLIARKALPFIDNKTTMAADSSSTVMELLKLLQDRSGLTLLTNSAEAIHVLAQ--SEIKVVSTGGELNKNTLSLQGRITK 158
Cdd:PRK10434  79 ELIAEAAVSLIHDGDSIILDAGSTVLQMVPLLSRFNNITVMTNSLHIVNALSEldNEQTILMPGGTFRKKSASFHGQLAE 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129724  159 EIIRRYHVDIMVMSCKGLDINSGALDSNEAEAeIKKTMIRQATEVALLVDHSKFDRKAFVQLADFSHINYIITDKSPGAE 238
Cdd:PRK10434 159 NAFEHFTFDKLFIGTDGIDLNAGVTTFNEVYT-VSKAMCNAAREIILMADSSKFGRKSPNVVCSLEKVDKLITDAGIDPA 237

                        250
                 ....*....|...
gi 16129724  239 WIAFCKDNNIQLV 251
Cdd:PRK10434 238 FRQALEEKGIEVI 250
PRK09802 PRK09802
DeoR family transcriptional regulator;
5-251 1.68e-33

DeoR family transcriptional regulator;


Pssm-ID: 182086 [Multi-domain]  Cd Length: 269  Bit Score: 122.27  E-value: 1.68e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129724    5 DRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGAVL---NTAMLTENIHfyKRASSFYEEKQ 81
Cdd:PRK09802  17 ERREQIIQRLRQQGSVQVNDLSALYGVSTVTIRNDLAFLEKQGIAVRAYGGALIcdsTTPSVEPSVE--DKSALNTAMKR 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129724   82 LIARKALPFIDNKTTMAADSSSTVMELLKLLQDRSGLTLLTNSAEAIHVLAQSE-IKVVSTGGELNKNTLSLQGRITKEI 160
Cdd:PRK09802  95 SVAKAAVELIQPGHRVILDSGTTTFEIARLMRKHTDVIAMTNGMNVANALLEAEgVELLMTGGHLRRQSQSFYGDQAEQS 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129724  161 IRRYHVDIMVMSCKGLDINSGALDSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFVQLADFSHINYIITDKSPGAEWI 240
Cdd:PRK09802 175 LQNYHFDMLFLGVDAIDLERGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDEGIPADSL 254

                        250
                 ....*....|.
gi 16129724  241 AFCKDNNIQLV 251
Cdd:PRK09802 255 EGLRKAGVEVI 265
PRK10906 PRK10906
DeoR/GlpR family transcriptional regulator;
1-250 3.59e-31

DeoR/GlpR family transcriptional regulator;


Pssm-ID: 182827 [Multi-domain]  Cd Length: 252  Bit Score: 115.73  E-value: 3.59e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129724    1 MAAKDRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGAVLNTAmlTENIHFYKRASSFYEEK 80
Cdd:PRK10906   1 MKQTQRHDAIIELVKQQGYVSTEELVEHFSVSPQTIRRDLNDLAEQNKILRHHGGAALPSS--SVNTPWHDRKATQTEEK 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129724   81 QLIARKALPFIDNKTTMAADSSSTVMELLKLLQDRSGLTLLTNSAE-AIHVLAQSEIKVVSTGGELNKNTLSLQGRITKE 159
Cdd:PRK10906  79 ERIARKVASQIPNGATLFIDIGTTPEAVAHALLNHSNLRIVTNNLNvANTLMAKEDFRIILAGGELRSRDGGIIGEATLD 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129724  160 IIRRYHVDIMVMSCKGLDINSGALDSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFVQLADFSHINYIITDKSPGAEW 239
Cdd:PRK10906 159 FISQFRLDFGILGISGIDSDGSLLEFDYHEVRTKRAIIENSRHVMLVVDHSKFGRNAMVNMGSISMVDAVYTDQLPPASV 238

                        250
                 ....*....|.
gi 16129724  240 IAFCKDNNIQL 250
Cdd:PRK10906 239 MQVIEDHHVQL 249
HTH_DEOR smart00420
helix_turn_helix, Deoxyribose operon repressor;
6-58 8.49e-19

helix_turn_helix, Deoxyribose operon repressor;


Pssm-ID: 197714 [Multi-domain]  Cd Length: 53  Bit Score: 77.26  E-value: 8.49e-19
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 16129724      6 RIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGAVL 58
Cdd:smart00420   1 RQQQILELLAQQGKVSVEELAELLGVSEMTIRRDLNKLEEQGLLTRVHGGAVS 53
PRK13509 PRK13509
HTH-type transcriptional regulator UlaR;
1-251 8.29e-15

HTH-type transcriptional regulator UlaR;


Pssm-ID: 184100 [Multi-domain]  Cd Length: 251  Bit Score: 71.58  E-value: 8.29e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129724    1 MAAKDRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGA-VLNTAMLTE---NIHFykraSSF 76
Cdd:PRK13509   1 MTEAQRHQILLELLAQLGFVTVEKVIERLGISPATARRDINKLDESGKLKKVRNGAeAITQQRPRWtpmNIHQ----AQN 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129724   77 YEEKQLIARKALPFIDNKTTMAADSSSTVMELLKLLQDRSgLTLLTNSAE-AIHVLAQSEIKVVSTGGELNKN---TLSL 152
Cdd:PRK13509  77 HDEKVRIAKAASQLCNPGESVVINCGSTAFLLGRELCGKP-VQIITNYLPlANYLIDQEHDSVIIMGGQYNKSqsiTLSP 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129724  153 QGritkEIIRRYHVDIMVMSCKGLdINSGALDSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFVQLADFSHINYIITD 232
Cdd:PRK13509 156 QG----SENSLYAGHWMFTSGKGL-TADGLYKTDMLTAMAEQKMLSVVGKLVVLVDSSKIGERAGMLFSRADQIDMLITG 230

                        250       260
                 ....*....|....*....|.
gi 16129724  233 KSPGAEWIAFCKDN--NIQLV 251
Cdd:PRK13509 231 KNADPEVLQQLEAQgvSILLV 251
PRK10681 PRK10681
DNA-binding transcriptional repressor DeoR; Provisional
 5-252 1.04e-13

DNA-binding transcriptional repressor DeoR; Provisional


Pssm-ID: 182644 [Multi-domain]  Cd Length: 252  Bit Score: 68.57  E-value: 1.04e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129724    5 DRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLtrtYGGAVLNTAMLTENIHFYKRASSFYEEKQLIA 84
Cdd:PRK10681   7 ERIGQLLQALKRSDKLHLKDAAALLGVSEMTIRRDLNAHSAPVVL---LGGYIVLEPRSASHYLLSDQKSRLVEEKRRAA 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129724   85 RKALPFIDNKTTMAADSSSTVMELLKLLQDRSGLTLLTNSAEAIHVLAQS-EIKVVSTGGELNKNT-----LSLQgritk 158
Cdd:PRK10681  84 QLAATLVEPNQTLFFDCGTTTPWIIEAIDNELPFTAVCYSLNTFLALQEKpHCRAILCGGEFHASNaifkpLDFQ----- 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129724  159 EIIRRYHVDIMVMSCKGLDINSGALDSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFVQLADFSHINYIITDKSPGAE 238
Cdd:PRK10681 159 QTLDNICPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMAMAQKHVLVVDHSKFGKVRPARMGDLTRFDTVVSDRCPDDE 238

                        250
                 ....*....|....
gi 16129724  239 WIAFCKDNNIQLVW 252
Cdd:PRK10681 239 FVKYAQAQRIKLMY 252
HTH_DeoR pfam08220
DeoR-like helix-turn-helix domain;
6-60 4.85e-13

DeoR-like helix-turn-helix domain;


Pssm-ID: 285436 [Multi-domain]  Cd Length: 57  Bit Score: 62.28  E-value: 4.85e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 16129724     6 RIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGAVLNT 60
Cdd:pfam08220   1 RIQQILELLKQQGTLSVEELAELLGVSEMTIRRDLNELEEQGLLTRTHGGAVSNS 55
YobV COG2378
Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains ...
 1-48 1.03e-04

Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains [Transcription];


Pssm-ID: 441945 [Multi-domain]  Cd Length: 314  Bit Score: 42.76  E-value: 1.03e-04
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*...
gi 16129724   1 MAAKDRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGF 48
Cdd:COG2378   1 MSRLERLLALLQLLQSRRGVTAAELAERLEVSERTIYRDIDALRELGV 48
COG3177 COG3177
Fic family protein [Transcription];
4-55 1.23e-03

Fic family protein [Transcription];


Pssm-ID: 442410 [Multi-domain]  Cd Length: 316  Bit Score: 39.28  E-value: 1.23e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|..
gi 16129724   4 KDRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGG 55
Cdd:COG3177 260 NERQRKLLELLFENPVLTASELAELLGVSRRTARRDLKDLVELGILEKVGGG 311
COG2345 COG2345
Predicted transcriptional regulator, ArsR family [Transcription];
8-53 1.50e-03

Predicted transcriptional regulator, ArsR family [Transcription];


Pssm-ID: 441914 [Multi-domain]  Cd Length: 217  Bit Score: 38.75  E-value: 1.50e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*.
gi 16129724   8 QAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTY 53
Cdd:COG2345  16 RRILELLKRAGPVTAAELAEALGLTPNAVRRHLDALEEEGLVERET 61
HTH_11 pfam08279
HTH domain; This family includes helix-turn-helix domains in a wide variety of proteins.
 8-48 8.09e-03

HTH domain; This family includes helix-turn-helix domains in a wide variety of proteins.


Pssm-ID: 429896 [Multi-domain]  Cd Length: 52  Bit Score: 33.56  E-value: 8.09e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 16129724     8 QAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGF 48
Cdd:pfam08279   2 QILQLLLEARGPISGQELAEKLGVSRRTIRRDIKILEELGV 42
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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