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Conserved domains on  [gi|16129750|ref|NP_416310|]
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DUF1869 domain-containing protein YoaG [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1869 super family cl07528
Domain of unknown function (DUF1869); This domain is found in a set of hypothetical bacterial ...
 5-60 8.81e-25

Domain of unknown function (DUF1869); This domain is found in a set of hypothetical bacterial proteins.


The actual alignment was detected with superfamily member pfam08956:

Pssm-ID: 430343  Cd Length: 56  Bit Score: 86.43  E-value: 8.81e-25
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 16129750    5 TYTVTVTNNSNGVSVDYETETPMTLLVPEVAAEVIKDLVNTVRSYDTENEHDVCGW 60
Cdd:pfam08956  1 EFLLTVTNNNNGVSVDKDFSTLAELRDPETAADVVKDLINIVRGYDSDEETNVCGW 56
 
Name Accession Description Interval E-value
DUF1869 pfam08956
Domain of unknown function (DUF1869); This domain is found in a set of hypothetical bacterial ...
 5-60 8.81e-25

Domain of unknown function (DUF1869); This domain is found in a set of hypothetical bacterial proteins.


Pssm-ID: 430343  Cd Length: 56  Bit Score: 86.43  E-value: 8.81e-25
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 16129750    5 TYTVTVTNNSNGVSVDYETETPMTLLVPEVAAEVIKDLVNTVRSYDTENEHDVCGW 60
Cdd:pfam08956  1 EFLLTVTNNNNGVSVDKDFSTLAELRDPETAADVVKDLINIVRGYDSDEETNVCGW 56
 
Name Accession Description Interval E-value
DUF1869 pfam08956
Domain of unknown function (DUF1869); This domain is found in a set of hypothetical bacterial ...
 5-60 8.81e-25

Domain of unknown function (DUF1869); This domain is found in a set of hypothetical bacterial proteins.


Pssm-ID: 430343  Cd Length: 56  Bit Score: 86.43  E-value: 8.81e-25
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 16129750    5 TYTVTVTNNSNGVSVDYETETPMTLLVPEVAAEVIKDLVNTVRSYDTENEHDVCGW 60
Cdd:pfam08956  1 EFLLTVTNNNNGVSVDKDFSTLAELRDPETAADVVKDLINIVRGYDSDEETNVCGW 56
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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