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Conserved domains on  [gi|226524724|ref|NP_416324|]
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DUF1889 domain-containing protein YoaC [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1889 pfam08986
Domain of unknown function (DUF1889); This domain is found in a set of hypothetical bacterial ...
 1-96 8.79e-58

Domain of unknown function (DUF1889); This domain is found in a set of hypothetical bacterial proteins. They are probably cytoplasmic proteins.


:

Pssm-ID: 462649  Cd Length: 96  Bit Score: 172.73  E-value: 8.79e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226524724   1 MPAVIDKALDFIGAMDVSAPTPSSMNESTAKGIFKYLKELGVPASAADITARADQEGWNPGFTEKMVGWAKKMETGERSV 80
Cdd:pfam08986  1 MPTVIDKALDFIGGMNTSASVPHSMDESTAKGIFKYLKELGVPASAADVTARGDQEGWNAGFTKKVAGWADKVASGERIV 80

                         90
                 ....*....|....*.
gi 226524724  81 IKNPEYFSTYMQEELK 96
Cdd:pfam08986 81 IKNPEYFSSYMREELR 96
 
Name Accession Description Interval E-value
DUF1889 pfam08986
Domain of unknown function (DUF1889); This domain is found in a set of hypothetical bacterial ...
 1-96 8.79e-58

Domain of unknown function (DUF1889); This domain is found in a set of hypothetical bacterial proteins. They are probably cytoplasmic proteins.


Pssm-ID: 462649  Cd Length: 96  Bit Score: 172.73  E-value: 8.79e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226524724   1 MPAVIDKALDFIGAMDVSAPTPSSMNESTAKGIFKYLKELGVPASAADITARADQEGWNPGFTEKMVGWAKKMETGERSV 80
Cdd:pfam08986  1 MPTVIDKALDFIGGMNTSASVPHSMDESTAKGIFKYLKELGVPASAADVTARGDQEGWNAGFTKKVAGWADKVASGERIV 80

                         90
                 ....*....|....*.
gi 226524724  81 IKNPEYFSTYMQEELK 96
Cdd:pfam08986 81 IKNPEYFSSYMREELR 96
 
Name Accession Description Interval E-value
DUF1889 pfam08986
Domain of unknown function (DUF1889); This domain is found in a set of hypothetical bacterial ...
 1-96 8.79e-58

Domain of unknown function (DUF1889); This domain is found in a set of hypothetical bacterial proteins. They are probably cytoplasmic proteins.


Pssm-ID: 462649  Cd Length: 96  Bit Score: 172.73  E-value: 8.79e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226524724   1 MPAVIDKALDFIGAMDVSAPTPSSMNESTAKGIFKYLKELGVPASAADITARADQEGWNPGFTEKMVGWAKKMETGERSV 80
Cdd:pfam08986  1 MPTVIDKALDFIGGMNTSASVPHSMDESTAKGIFKYLKELGVPASAADVTARGDQEGWNAGFTKKVAGWADKVASGERIV 80

                         90
                 ....*....|....*.
gi 226524724  81 IKNPEYFSTYMQEELK 96
Cdd:pfam08986 81 IKNPEYFSSYMREELR 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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