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Conserved domains on  [gi|16129778|ref|NP_416338|]
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DUF2527 domain-containing protein YobF [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2527 super family cl11330
Protein of unknown function (DUF2627); This family of proteins with unknown function appears ...
 1-38 2.87e-21

Protein of unknown function (DUF2627); This family of proteins with unknown function appears to be restricted to a family of Enterobacterial proteins. It has a highly conserved sequence.


The actual alignment was detected with superfamily member pfam10736:

Pssm-ID: 119256  Cd Length: 38  Bit Score: 76.33  E-value: 2.87e-21
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 16129778    1 MCGIFSKEVLSKHVDVEYRFSAEPYIGASCSNVSVLSM 38
Cdd:pfam10736  1 MCGIFSKEVLSKDVDVEYRFSADPYIGASCSNDSSLSM 38
 
Name Accession Description Interval E-value
DUF2527 pfam10736
Protein of unknown function (DUF2627); This family of proteins with unknown function appears ...
 1-38 2.87e-21

Protein of unknown function (DUF2627); This family of proteins with unknown function appears to be restricted to a family of Enterobacterial proteins. It has a highly conserved sequence.


Pssm-ID: 119256  Cd Length: 38  Bit Score: 76.33  E-value: 2.87e-21
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 16129778    1 MCGIFSKEVLSKHVDVEYRFSAEPYIGASCSNVSVLSM 38
Cdd:pfam10736  1 MCGIFSKEVLSKDVDVEYRFSADPYIGASCSNDSSLSM 38
 
Name Accession Description Interval E-value
DUF2527 pfam10736
Protein of unknown function (DUF2627); This family of proteins with unknown function appears ...
 1-38 2.87e-21

Protein of unknown function (DUF2627); This family of proteins with unknown function appears to be restricted to a family of Enterobacterial proteins. It has a highly conserved sequence.


Pssm-ID: 119256  Cd Length: 38  Bit Score: 76.33  E-value: 2.87e-21
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 16129778    1 MCGIFSKEVLSKHVDVEYRFSAEPYIGASCSNVSVLSM 38
Cdd:pfam10736  1 MCGIFSKEVLSKDVDVEYRFSADPYIGASCSNDSSLSM 38
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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