NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|16129779|ref|NP_416339|]
View 

uncharacterized protein YebO [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

YebO family protein( domain architecture ID 10623527)

YebO family protein similar to Escherichia coli uncharacterized protein YebO

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
YebO pfam13974
YebO-like protein; This short protein is uncharacterized. It seems likely to be of phage ...
 24-95 5.20e-30

YebO-like protein; This short protein is uncharacterized. It seems likely to be of phage origin as it is found in Swiss:Q9MCU2 and Swiss:Q9MCS4. The protein is also found in a variety of enteric bacteria.


:

Pssm-ID: 433617  Cd Length: 78  Bit Score: 101.66  E-value: 5.20e-30
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16129779   24 IGLILWFFINRASSRTNEQIELLEALLDQQKRQNALLRRLCEANEPEKADKKtvESQKSVEDEDIIRLVAER 95
Cdd:pfam13974  9 VGLIVWFFVNRASVRANEQIALLQELLEQQKQQNALLRRLCEANAPEKEPAP--EDEAAASSLDFKRLIPER 78
 
Name Accession Description Interval E-value
YebO pfam13974
YebO-like protein; This short protein is uncharacterized. It seems likely to be of phage ...
 24-95 5.20e-30

YebO-like protein; This short protein is uncharacterized. It seems likely to be of phage origin as it is found in Swiss:Q9MCU2 and Swiss:Q9MCS4. The protein is also found in a variety of enteric bacteria.


Pssm-ID: 433617  Cd Length: 78  Bit Score: 101.66  E-value: 5.20e-30
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16129779   24 IGLILWFFINRASSRTNEQIELLEALLDQQKRQNALLRRLCEANEPEKADKKtvESQKSVEDEDIIRLVAER 95
Cdd:pfam13974  9 VGLIVWFFVNRASVRANEQIALLQELLEQQKQQNALLRRLCEANAPEKEPAP--EDEAAASSLDFKRLIPER 78
 
Name Accession Description Interval E-value
YebO pfam13974
YebO-like protein; This short protein is uncharacterized. It seems likely to be of phage ...
 24-95 5.20e-30

YebO-like protein; This short protein is uncharacterized. It seems likely to be of phage origin as it is found in Swiss:Q9MCU2 and Swiss:Q9MCS4. The protein is also found in a variety of enteric bacteria.


Pssm-ID: 433617  Cd Length: 78  Bit Score: 101.66  E-value: 5.20e-30
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16129779   24 IGLILWFFINRASSRTNEQIELLEALLDQQKRQNALLRRLCEANEPEKADKKtvESQKSVEDEDIIRLVAER 95
Cdd:pfam13974  9 VGLIVWFFVNRASVRANEQIALLQELLEQQKQQNALLRRLCEANAPEKEPAP--EDEAAASSLDFKRLIPER 78
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH