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Conserved domains on  [gi|16130004|ref|NP_416568|]
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putative assembly protein AsmA [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

outer membrane assembly protein AsmA( domain architecture ID 11484974)

outer membrane assembly protein AsmA is involved in the inhibition of assembly of mutant ompF proteins

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
PRK10833 PRK10833
putative assembly protein; Provisional
 1-617 0e+00

putative assembly protein; Provisional


:

Pssm-ID: 236772 [Multi-domain]  Cd Length: 617  Bit Score: 1091.87  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004    1 MRRFLTTLMILLVVLVAGLSALVLLVNPNDFRDYMVKQVAARSGYQLQLDGPLRWHVWPQLSILSGRMSLTAQGASQPLV 80
Cdd:PRK10833   1 MRRFLTTLMILLVVLVAGLSALVLLVNPNDFRAYMVKQVEARSGYQLQLDGDLRWHVWPQLSILSGRMSLTAPGASQPVV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004   81 RADNMRLDVALLPLLSHQLSVKQVMLKGAVIQLTPQTEAVRSEDAPVAPRDNTLPDLSDDRGWSFDISSLKVADSVLVFQ 160
Cdd:PRK10833  81 SADNMRLDVALWPLLSHQLSVKQVMLKGAVIRLTPDSEAQRSEDAPVAPKGNTLPDVSDDRGWSFDISSLKVADSLLIWQ 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004  161 HEDDEQVTIRNIRLQMEQDPQHRGSFEFSGRVNRDQRDLTISLNGTVDASDYPHDLTAAIEQINWQLQGADLPKQGIQGQ 240
Cdd:PRK10833 161 HEDDEQINVRDINLQMEQDAQRQVSVEFSSRVNRDQRDLTLSLNATVDASDYPHQLTANIEQLDYQLQGADLPAQGISGQ 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004  241 GSFQAQWQESHKRLSFNQISLTANDSTLSGQAQVTLTEKPEWQLRLQFPQLNLDNLIPLNETANGENGaAQQGQSQSTLP 320
Cdd:PRK10833 241 GSLQAQWQESPKRLSLNQLNLTANDSQLSGSASVTLGEKPEYQLDLQSDKLNLDNLLGLQPLANDENG-AQQGQSQPTLP 319

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004  321 RPVISSRID-EPAYQGLQGFTADILLQASNVRWRGMNFTDVATQMTNKSGLLEITQLQGKLNGGQVSLPGTLDATSINPR 399
Cdd:PRK10833 320 RPVIASRIDsEPAYQGLRDFTADLTLQADNVRYRGMNFTQVALQATNQQGLLTITTLSGKLGGGDFSLPGTLDATGASPR 399

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004  400 INFQPRLENVEIGTILKAFNYPISLTGKMSLAGDFSGADIDADAFRHNWQGQAHVEMTDTRMEGMNFQQMIQQAVERNGG 479
Cdd:PRK10833 400 ITFQPRLKNVELGPLLKAFNLPISLTGKLSLAGDFSGAGIDAAAFRHQWQGQAHVSMDNARLEGLNIQQLIQQAVERSGG 479

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004  480 DVKAAENFDNVTRLDRFTTDLTLKDGVVTLNDMQGQSPVLALTGEGMLNLADQTCDTQFDIRVVGGWNGESKLIDFLKET 559
Cdd:PRK10833 480 DVKAQENYDNYTRLDRLTADLTLNRGVLTLNDLQGQSSLLALTGSGQLNLPKQQCDVNFNVRVTGGWNGDSKLIDFLQET 559

                        570       580       590       600       610
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 16130004  560 PVPLRVYGNWQQLNYSLQVDQLLRKHLQDEAKRRLNDWAERNKDSRNGKDVKKLLEKM 617
Cdd:PRK10833 560 PVPLRVYGNWQQLNYQLQVDQLLRKHLQDEAKKRLNDWAERNKDSRNGKDVKKLLDKL 617
 
Name Accession Description Interval E-value
PRK10833 PRK10833
putative assembly protein; Provisional
 1-617 0e+00

putative assembly protein; Provisional


Pssm-ID: 236772 [Multi-domain]  Cd Length: 617  Bit Score: 1091.87  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004    1 MRRFLTTLMILLVVLVAGLSALVLLVNPNDFRDYMVKQVAARSGYQLQLDGPLRWHVWPQLSILSGRMSLTAQGASQPLV 80
Cdd:PRK10833   1 MRRFLTTLMILLVVLVAGLSALVLLVNPNDFRAYMVKQVEARSGYQLQLDGDLRWHVWPQLSILSGRMSLTAPGASQPVV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004   81 RADNMRLDVALLPLLSHQLSVKQVMLKGAVIQLTPQTEAVRSEDAPVAPRDNTLPDLSDDRGWSFDISSLKVADSVLVFQ 160
Cdd:PRK10833  81 SADNMRLDVALWPLLSHQLSVKQVMLKGAVIRLTPDSEAQRSEDAPVAPKGNTLPDVSDDRGWSFDISSLKVADSLLIWQ 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004  161 HEDDEQVTIRNIRLQMEQDPQHRGSFEFSGRVNRDQRDLTISLNGTVDASDYPHDLTAAIEQINWQLQGADLPKQGIQGQ 240
Cdd:PRK10833 161 HEDDEQINVRDINLQMEQDAQRQVSVEFSSRVNRDQRDLTLSLNATVDASDYPHQLTANIEQLDYQLQGADLPAQGISGQ 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004  241 GSFQAQWQESHKRLSFNQISLTANDSTLSGQAQVTLTEKPEWQLRLQFPQLNLDNLIPLNETANGENGaAQQGQSQSTLP 320
Cdd:PRK10833 241 GSLQAQWQESPKRLSLNQLNLTANDSQLSGSASVTLGEKPEYQLDLQSDKLNLDNLLGLQPLANDENG-AQQGQSQPTLP 319

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004  321 RPVISSRID-EPAYQGLQGFTADILLQASNVRWRGMNFTDVATQMTNKSGLLEITQLQGKLNGGQVSLPGTLDATSINPR 399
Cdd:PRK10833 320 RPVIASRIDsEPAYQGLRDFTADLTLQADNVRYRGMNFTQVALQATNQQGLLTITTLSGKLGGGDFSLPGTLDATGASPR 399

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004  400 INFQPRLENVEIGTILKAFNYPISLTGKMSLAGDFSGADIDADAFRHNWQGQAHVEMTDTRMEGMNFQQMIQQAVERNGG 479
Cdd:PRK10833 400 ITFQPRLKNVELGPLLKAFNLPISLTGKLSLAGDFSGAGIDAAAFRHQWQGQAHVSMDNARLEGLNIQQLIQQAVERSGG 479

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004  480 DVKAAENFDNVTRLDRFTTDLTLKDGVVTLNDMQGQSPVLALTGEGMLNLADQTCDTQFDIRVVGGWNGESKLIDFLKET 559
Cdd:PRK10833 480 DVKAQENYDNYTRLDRLTADLTLNRGVLTLNDLQGQSSLLALTGSGQLNLPKQQCDVNFNVRVTGGWNGDSKLIDFLQET 559

                        570       580       590       600       610
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 16130004  560 PVPLRVYGNWQQLNYSLQVDQLLRKHLQDEAKRRLNDWAERNKDSRNGKDVKKLLEKM 617
Cdd:PRK10833 560 PVPLRVYGNWQQLNYQLQVDQLLRKHLQDEAKKRLNDWAERNKDSRNGKDVKKLLDKL 617
AsmA COG2982
Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall ...
 1-474 5.09e-121

Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442221 [Multi-domain]  Cd Length: 491  Bit Score: 367.44  E-value: 5.09e-121
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004   1 MRRFLTTLMILLVVLVAGLSALVLLVNPNDFRDYMVKQVAARSGYQLQLDGPLRWHVWPQLSILSGRMSLTA--QGASQP 78
Cdd:COG2982   4 MKRLLIILAILLVLLVAALVALPLLFDWNRLRPLIERQVSEATGREVTIDGDLSLSLFPWPGVTLGDVTLSNpdGFGGPP 83

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004  79 LVRADNMRLDVALLPLLSHQLSVKQVMLKGAVIQLTPQTEAVRSEDAPVAPRDNtlPDLSDDRGWSFDISSLKVADSVLV 158
Cdd:COG2982  84 LASAERLELDLALLPLLSGELEVDEITLDGPVINLERDADGRANWDFLLAAAAA--AADAEASAWSLDIGRLEITDGRLV 161

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004 159 FQHEDDEQ-VTIRNIRLQMEQdPQHRGSFEFSGR--------------------------VNRDQRDLTISLNGTVDASD 211
Cdd:COG2982 162 YDDAASGAdLTLDDLNLTLSG-PSLDGPFRLSGSgrlngqpltldgkiggllalgpyplkLDLRSGDLRLSLDGTVDLAG 240

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004 212 YPHDLTAAIEQINWQLQ--GADLPKQGiqgQGSFQAQWQESHKRLSFNQISLTANDSTLSGQAQVTLTEKPEWQLRLQFP 289
Cdd:COG2982 241 LDGQLALSGPSLRDLLAllGVTLPEPG---PFSLSGRLTADGDRLRLEDLKGTLGDSDLTGDLSVTGGDRPALTGDLASD 317

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004 290 QLNLDNLIPlnetANGENGAAQQGQSQSTLPRpvissriDEPAYQGLQGFTADILLQASNVRWRGMNFTDVATQMTNKSG 369
Cdd:COG2982 318 RLDLDDLLP----AAPAAAAAGAPAAARGLPD-------APLDLSALRALDADVRLSADSLKLGGLPLGDLAAHLTLDDG 386

                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004 370 LLEITQLQGKLNGGQVSLPGTLDATSINPRINFQPRLENVEIGTILKAFNYPISLTGKMSLAGDFSGADIDADAFRHNWQ 449
Cdd:COG2982 387 RLDLDPLSAGLYGGTLSGSLTLDARGDPPRVALKLSLSGVDLGPLLPDLAGFDRLSGTLNGDLDLSGTGNSVAALLASLN 466

                       490       500
                ....*....|....*....|....*
gi 16130004 450 GQAHVEMTDTRMEGMNFQQMIQQAV 474
Cdd:COG2982 467 GSASLSLGDGAISGLNLEQLLRNAG 491
AsmA pfam05170
AsmA family; The AsmA gene, whose product is involved in the assembly of outer membrane ...
 2-511 8.16e-33

AsmA family; The AsmA gene, whose product is involved in the assembly of outer membrane proteins in Escherichia coli. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant. AsmA may have a role in LPS biogenesis.


Pssm-ID: 428346 [Multi-domain]  Cd Length: 607  Bit Score: 133.37  E-value: 8.16e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004     2 RRFLTTLMILLVVLVAGLSALVLLVNPNDFRDYMVKQVAARSGYQLQLDGPLRWHVWPQLSILSGRMSLT-AQGASQPLV 80
Cdd:pfam05170   5 LKILVAILLGLLLLLVLLAALIALFDPNNYKPTLQQKVSAATNRPLAINGDIGRSLFPWPTLSLSDITLAsPQGDATPLV 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004    81 RADNMRLDVALLPLLSHQLSVKQVMLKGAVIQLTPQTEAVRSEDAPVAPRDNTLPDLS--------DDRGWSFDISSLKV 152
Cdd:pfam05170  85 SLEQVKISLSPLPLLRKQIEIDSIRLDGAELALERLKQGNWNWQELIQNQQNQASNAPtqqpqptwPVAAWSLPIGRIQV 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004   153 ADSVLVFQHEDDEQVTIR-NIRLQM-------------------EQDPQHRGSFEF----SGRVNRDQR----------- 197
Cdd:pfam05170 165 SNGQVTIDDKASQKILKDiNLELQVstlygpsfnwskitisgkgDQDPQSFGSQVNvtilSGEISGEALrgststggmll 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004   198 -------------------------DLTISLNGTVDASDYPHDLTAAIeQINWQLQGADLPKQGIQ-------------- 238
Cdd:pfam05170 245 lqtlsspiyhinslkllnaqleldgTLWDNLNLSIEDLDLKASGWKSI-TVNLALTADELDSLANQaelpganlpdtpqn 323

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004   239 -GQGSFQAQWQESHKRLSFNQISLTA--NDSTLSGQAQVTLTE------------KPEWQLRLQFPQLNLDNLIPLNETA 303
Cdd:pfam05170 324 iTLGELSLSFKTGRVQVSGSLNSLTLnlDYLSFDGKKWVGSSDidlsnrlpqpqpRPKLRGKLSSPELDLDNLLPIKTAV 403

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004   304 NGENGAAQQGQSQSTLPRPVISSRIDEPAYQGLQGFTADILLQASNVRWRGMNFTDVATQMTNKSGLLEITQLQGKLNGG 383
Cdd:pfam05170 404 AAKSRAPEWDASGLSADGANLPLPVEPFLWGVWQGMDADVSANIDKVTYSGLPISDLKTKLRSEGGVLQLSRLKGGLYGG 483

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004   384 QVSLPGTLDATSINPRINFQPRLENVEIGTILKAFNYPISLTGKMSLAGDFSGADIDADAFRHNWQGQAHVEMTDTRMEG 463
Cdd:pfam05170 484 YLEAGAQLDLSKKPATYRLKINAKNIPLKPLLPDLFKMFSTDGLLDIDADLQGSGNSVKMLIGSLNGQLKLNLRNGALSG 563

                         570       580       590       600
                  ....*....|....*....|....*....|....*....|....*...
gi 16130004   464 MNFQQMIqqaveRNGGDVKAAENFDNVTRLDRFTTDLTLKDGVVTLND 511
Cdd:pfam05170 564 INVGNIL-----VNGIAGLTSDFGDKSTPFNCLTLNLNLQRGVVTLND 606
 
Name Accession Description Interval E-value
PRK10833 PRK10833
putative assembly protein; Provisional
 1-617 0e+00

putative assembly protein; Provisional


Pssm-ID: 236772 [Multi-domain]  Cd Length: 617  Bit Score: 1091.87  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004    1 MRRFLTTLMILLVVLVAGLSALVLLVNPNDFRDYMVKQVAARSGYQLQLDGPLRWHVWPQLSILSGRMSLTAQGASQPLV 80
Cdd:PRK10833   1 MRRFLTTLMILLVVLVAGLSALVLLVNPNDFRAYMVKQVEARSGYQLQLDGDLRWHVWPQLSILSGRMSLTAPGASQPVV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004   81 RADNMRLDVALLPLLSHQLSVKQVMLKGAVIQLTPQTEAVRSEDAPVAPRDNTLPDLSDDRGWSFDISSLKVADSVLVFQ 160
Cdd:PRK10833  81 SADNMRLDVALWPLLSHQLSVKQVMLKGAVIRLTPDSEAQRSEDAPVAPKGNTLPDVSDDRGWSFDISSLKVADSLLIWQ 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004  161 HEDDEQVTIRNIRLQMEQDPQHRGSFEFSGRVNRDQRDLTISLNGTVDASDYPHDLTAAIEQINWQLQGADLPKQGIQGQ 240
Cdd:PRK10833 161 HEDDEQINVRDINLQMEQDAQRQVSVEFSSRVNRDQRDLTLSLNATVDASDYPHQLTANIEQLDYQLQGADLPAQGISGQ 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004  241 GSFQAQWQESHKRLSFNQISLTANDSTLSGQAQVTLTEKPEWQLRLQFPQLNLDNLIPLNETANGENGaAQQGQSQSTLP 320
Cdd:PRK10833 241 GSLQAQWQESPKRLSLNQLNLTANDSQLSGSASVTLGEKPEYQLDLQSDKLNLDNLLGLQPLANDENG-AQQGQSQPTLP 319

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004  321 RPVISSRID-EPAYQGLQGFTADILLQASNVRWRGMNFTDVATQMTNKSGLLEITQLQGKLNGGQVSLPGTLDATSINPR 399
Cdd:PRK10833 320 RPVIASRIDsEPAYQGLRDFTADLTLQADNVRYRGMNFTQVALQATNQQGLLTITTLSGKLGGGDFSLPGTLDATGASPR 399

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004  400 INFQPRLENVEIGTILKAFNYPISLTGKMSLAGDFSGADIDADAFRHNWQGQAHVEMTDTRMEGMNFQQMIQQAVERNGG 479
Cdd:PRK10833 400 ITFQPRLKNVELGPLLKAFNLPISLTGKLSLAGDFSGAGIDAAAFRHQWQGQAHVSMDNARLEGLNIQQLIQQAVERSGG 479

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004  480 DVKAAENFDNVTRLDRFTTDLTLKDGVVTLNDMQGQSPVLALTGEGMLNLADQTCDTQFDIRVVGGWNGESKLIDFLKET 559
Cdd:PRK10833 480 DVKAQENYDNYTRLDRLTADLTLNRGVLTLNDLQGQSSLLALTGSGQLNLPKQQCDVNFNVRVTGGWNGDSKLIDFLQET 559

                        570       580       590       600       610
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 16130004  560 PVPLRVYGNWQQLNYSLQVDQLLRKHLQDEAKRRLNDWAERNKDSRNGKDVKKLLEKM 617
Cdd:PRK10833 560 PVPLRVYGNWQQLNYQLQVDQLLRKHLQDEAKKRLNDWAERNKDSRNGKDVKKLLDKL 617
AsmA COG2982
Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall ...
 1-474 5.09e-121

Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442221 [Multi-domain]  Cd Length: 491  Bit Score: 367.44  E-value: 5.09e-121
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004   1 MRRFLTTLMILLVVLVAGLSALVLLVNPNDFRDYMVKQVAARSGYQLQLDGPLRWHVWPQLSILSGRMSLTA--QGASQP 78
Cdd:COG2982   4 MKRLLIILAILLVLLVAALVALPLLFDWNRLRPLIERQVSEATGREVTIDGDLSLSLFPWPGVTLGDVTLSNpdGFGGPP 83

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004  79 LVRADNMRLDVALLPLLSHQLSVKQVMLKGAVIQLTPQTEAVRSEDAPVAPRDNtlPDLSDDRGWSFDISSLKVADSVLV 158
Cdd:COG2982  84 LASAERLELDLALLPLLSGELEVDEITLDGPVINLERDADGRANWDFLLAAAAA--AADAEASAWSLDIGRLEITDGRLV 161

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004 159 FQHEDDEQ-VTIRNIRLQMEQdPQHRGSFEFSGR--------------------------VNRDQRDLTISLNGTVDASD 211
Cdd:COG2982 162 YDDAASGAdLTLDDLNLTLSG-PSLDGPFRLSGSgrlngqpltldgkiggllalgpyplkLDLRSGDLRLSLDGTVDLAG 240

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004 212 YPHDLTAAIEQINWQLQ--GADLPKQGiqgQGSFQAQWQESHKRLSFNQISLTANDSTLSGQAQVTLTEKPEWQLRLQFP 289
Cdd:COG2982 241 LDGQLALSGPSLRDLLAllGVTLPEPG---PFSLSGRLTADGDRLRLEDLKGTLGDSDLTGDLSVTGGDRPALTGDLASD 317

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004 290 QLNLDNLIPlnetANGENGAAQQGQSQSTLPRpvissriDEPAYQGLQGFTADILLQASNVRWRGMNFTDVATQMTNKSG 369
Cdd:COG2982 318 RLDLDDLLP----AAPAAAAAGAPAAARGLPD-------APLDLSALRALDADVRLSADSLKLGGLPLGDLAAHLTLDDG 386

                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004 370 LLEITQLQGKLNGGQVSLPGTLDATSINPRINFQPRLENVEIGTILKAFNYPISLTGKMSLAGDFSGADIDADAFRHNWQ 449
Cdd:COG2982 387 RLDLDPLSAGLYGGTLSGSLTLDARGDPPRVALKLSLSGVDLGPLLPDLAGFDRLSGTLNGDLDLSGTGNSVAALLASLN 466

                       490       500
                ....*....|....*....|....*
gi 16130004 450 GQAHVEMTDTRMEGMNFQQMIQQAV 474
Cdd:COG2982 467 GSASLSLGDGAISGLNLEQLLRNAG 491
AsmA pfam05170
AsmA family; The AsmA gene, whose product is involved in the assembly of outer membrane ...
 2-511 8.16e-33

AsmA family; The AsmA gene, whose product is involved in the assembly of outer membrane proteins in Escherichia coli. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant. AsmA may have a role in LPS biogenesis.


Pssm-ID: 428346 [Multi-domain]  Cd Length: 607  Bit Score: 133.37  E-value: 8.16e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004     2 RRFLTTLMILLVVLVAGLSALVLLVNPNDFRDYMVKQVAARSGYQLQLDGPLRWHVWPQLSILSGRMSLT-AQGASQPLV 80
Cdd:pfam05170   5 LKILVAILLGLLLLLVLLAALIALFDPNNYKPTLQQKVSAATNRPLAINGDIGRSLFPWPTLSLSDITLAsPQGDATPLV 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004    81 RADNMRLDVALLPLLSHQLSVKQVMLKGAVIQLTPQTEAVRSEDAPVAPRDNTLPDLS--------DDRGWSFDISSLKV 152
Cdd:pfam05170  85 SLEQVKISLSPLPLLRKQIEIDSIRLDGAELALERLKQGNWNWQELIQNQQNQASNAPtqqpqptwPVAAWSLPIGRIQV 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004   153 ADSVLVFQHEDDEQVTIR-NIRLQM-------------------EQDPQHRGSFEF----SGRVNRDQR----------- 197
Cdd:pfam05170 165 SNGQVTIDDKASQKILKDiNLELQVstlygpsfnwskitisgkgDQDPQSFGSQVNvtilSGEISGEALrgststggmll 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004   198 -------------------------DLTISLNGTVDASDYPHDLTAAIeQINWQLQGADLPKQGIQ-------------- 238
Cdd:pfam05170 245 lqtlsspiyhinslkllnaqleldgTLWDNLNLSIEDLDLKASGWKSI-TVNLALTADELDSLANQaelpganlpdtpqn 323

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004   239 -GQGSFQAQWQESHKRLSFNQISLTA--NDSTLSGQAQVTLTE------------KPEWQLRLQFPQLNLDNLIPLNETA 303
Cdd:pfam05170 324 iTLGELSLSFKTGRVQVSGSLNSLTLnlDYLSFDGKKWVGSSDidlsnrlpqpqpRPKLRGKLSSPELDLDNLLPIKTAV 403

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004   304 NGENGAAQQGQSQSTLPRPVISSRIDEPAYQGLQGFTADILLQASNVRWRGMNFTDVATQMTNKSGLLEITQLQGKLNGG 383
Cdd:pfam05170 404 AAKSRAPEWDASGLSADGANLPLPVEPFLWGVWQGMDADVSANIDKVTYSGLPISDLKTKLRSEGGVLQLSRLKGGLYGG 483

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004   384 QVSLPGTLDATSINPRINFQPRLENVEIGTILKAFNYPISLTGKMSLAGDFSGADIDADAFRHNWQGQAHVEMTDTRMEG 463
Cdd:pfam05170 484 YLEAGAQLDLSKKPATYRLKINAKNIPLKPLLPDLFKMFSTDGLLDIDADLQGSGNSVKMLIGSLNGQLKLNLRNGALSG 563

                         570       580       590       600
                  ....*....|....*....|....*....|....*....|....*...
gi 16130004   464 MNFQQMIqqaveRNGGDVKAAENFDNVTRLDRFTTDLTLKDGVVTLND 511
Cdd:pfam05170 564 INVGNIL-----VNGIAGLTSDFGDKSTPFNCLTLNLNLQRGVVTLND 606
AsmA_2 pfam13502
AsmA-like C-terminal region; This family is similar to the C-terminal of the AsmA protein of E. ...
 357-570 3.19e-18

AsmA-like C-terminal region; This family is similar to the C-terminal of the AsmA protein of E. coli.


Pssm-ID: 463902 [Multi-domain]  Cd Length: 226  Bit Score: 83.95  E-value: 3.19e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004   357 FTDVATQMTNKSGLLEITQLQGKLNGGQVSLPGTLDATSINPRINFQPRLENVEIGTILKAFNYPISLTGKMSLAGDFSG 436
Cdd:pfam13502   1 LGNVSGKLRPQGGGLRLDKLNLRSPGGKLAGSGEWRTGGGAPRTNLDLKLDGVDLGALLKRLGLPEVLGGKGSLDGSLSW 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004   437 ADIDADAFRHNWQGQAHVEMTDTRMEGMNFQQMIQQAVerngGDVkaaenFDNVTRLDRFTTDLTLKDGVVTLNDMQGQS 516
Cdd:pfam13502  81 QGAPLSPDLSSLSGDLDLDLGNGQILGRDLGLLKTLDF----RDL-----FGKGLAFDSITGPFSIENGVVHTDDFKLDG 151

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16130004   517 PVLALTGEGMLNLADQTCD--TQFDIR------VVGGWNGESKLIDFL----------KETPVPLRVYGNWQ 570
Cdd:pfam13502 152 PAAKLTIKGTVDLDRETLDynVVVVPPigaslpVVAAAAGNPGLAAFAadkllsppleKIIALEYRVTGPWD 223
YhdR COG3164
Uncharacterized conserved protein YhdP, contains DUF3971 and AsmA2 domains [Function unknown];
3-393 5.45e-10

Uncharacterized conserved protein YhdP, contains DUF3971 and AsmA2 domains [Function unknown];


Pssm-ID: 442397 [Multi-domain]  Cd Length: 1289  Bit Score: 62.64  E-value: 5.45e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004    3 RFLTTLMILLVVLVAGLSALVLLVNP--NDFRDYMVKQVAARSGYQLQ---LDGplRWH-VWPQLSIlsGRMSLTAqGAS 76
Cdd:COG3164   14 RILLLLLAVLLVLLALLLSLLRLLLPllDDYRPQLEAWLSQALGVPVTigsLSA--SWQgLGPVLEL--RDVRLLD-PDG 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004   77 QPLVRADNMRLDVALL-PLLSHQLSVKQVMLKGAVIQLTPQTEA---VRSEDAPVAPRDNTLPDLSDdrgWSFDISSLKV 152
Cdd:COG3164   89 RPALRLPRVELALDLWrSLLHGRPRFRRLTLDGLQLDLRRDADGrwsVAGLPVSGGGDGDDLDALLD---WLLQQGRFSL 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004  153 ADSVLVFQHE-DDEQVTIRNIRLQMEQDP-QHRGSFEFSGRVNRDQRdLTISLNGTVDASDYPHDLTAaieQINWQLQGA 230
Cdd:COG3164  166 RDSRLRWLDPsRGPPLTLSIVNLRLRNGGrRHRLEGRASLPAALGGP-LDLRADLRGPDPGDWRGWSG---QLYLQADDV 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004  231 DL----------PKQGIQGQGSFQA-------QWQESHKRLSFNQISLTANDST-------LSGQAQVTLTEKpEWQLRL 286
Cdd:COG3164  242 DLapwlprdlpdNLGLQSGRGSLRAwldlrdgRLTSATADLALSDLSLRLAEDLpplalqrLSGRLRWQRQGD-GWQLDL 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004  287 QFPQLNLDNLI--PLNETANGENGAAQQGQSQSTLPR-----------------PVISSRIDEPAYQG-LQGFTADILLQ 346
Cdd:COG3164  321 PDLRLATDGQAwpLGDLSLRWQPAAGQGEELRLRADRldlaalapllpllpllpPALRELLAALQPRGrLRDLRLDWPLE 400

                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 16130004  347 AsNVRWRG-MNFTDVATQ-------MTNKSGLLEITQLQGKLN----GGQVSLPGTLDA 393
Cdd:COG3164  401 A-PERYRLsARLQDLSWQawgglpgVSGLSGTLSGDEQGGRLTldsqDATLDLPGVFRE 458
YhdR COG3164
Uncharacterized conserved protein YhdP, contains DUF3971 and AsmA2 domains [Function unknown];
257-543 1.06e-07

Uncharacterized conserved protein YhdP, contains DUF3971 and AsmA2 domains [Function unknown];


Pssm-ID: 442397 [Multi-domain]  Cd Length: 1289  Bit Score: 55.32  E-value: 1.06e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004  257 NQISLTANDSTLSGQA--QVTLTEKPE---WQLRLQFPQL-----------------NLDNL-IPLNETANGENGAAQQG 313
Cdd:COG3164  926 TRIDLRADQLDLGGQTlhDVRLSARRQgggWRLQLDSPELagtltwppaagagplraRLDRLhLPALEASEAGSAAGEPL 1005

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004  314 QSQSTLPRPVissridePAyqglqgftadILLQASNVRWRGMNFTDVATQMTNKSGLLEITQLQGKLNGGQVSLPGTLDA 393
Cdd:COG3164 1006 ADADVDPRSL-------PA----------LDLVVDDLRLGGRDLGRLELEARPDGDGLRLDKLRLDSPDARLTGSGDWRQ 1068

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004  394 TSINPRINFQPRLENVEIGTILKAFNYPISLTGkmslagdfSGADIDADAfrhNWQ------------GQAHVEMTD--- 458
Cdd:COG3164 1069 DGGGSRTRLKGKLDSKDLGKLLARFGYPSPIRG--------GSGKLDGDL---SWPgspwqfdlaslsGSLSLDLGKgqf 1137

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004  459 TRMEG--------MNFQqmiqqAVERnggdvKAAENFDNVTR----LDRFTTDLTLKDGVVTLNDMQGQSPVLALTGEGM 526
Cdd:COG3164 1138 LKVEPgagrllglLSLQ-----SLPR-----RLTLDFSDVFSkgfaFDSIRGSAQIADGVARTDDLLIDGPAADVLMSGS 1207

                        330
                 ....*....|....*..
gi 16130004  527 LNLADQTcdtqFDIRVV 543
Cdd:COG3164 1208 ADLVRET----LDLRVV 1220
TamB COG2911
Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, ...
 163-442 1.49e-07

Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442155 [Multi-domain]  Cd Length: 766  Bit Score: 54.66  E-value: 1.49e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004 163 DDEQVTIRNIRLQMEQ----DPQHRGSFEFSGRVNR-----------DQRDLTISLNGTVDASDYPHDLTAAIE-QINWQ 226
Cdd:COG2911 206 DDGRVTLGPLCLAGGGslclSGTLGGTLDLQLRLKNlplallnpflpDDLGLSGTLNGDADLSGGLANPQGDASlSLSGD 285

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004 227 LQGADLPKQGIQGQGSFQAQWQESHKRLSFN-QISLTANDS-TLSGQAQVTLTEKPEWQLRLQFpQLNLDNLIPLNeTAN 304
Cdd:COG2911 286 LTLNDGLGGLPLGLGDLTLNARLANGRLTLDlTLDGGGLGTlSLSGSVPLADGLPPSAPLDGNL-RLDNLDLALLN-PLL 363

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004 305 GENGAAQQGQSQSTLprpVISSRIDEPAYQG---LQGFTADILLQasnvrwrGMNFTDVATQMTNKSGLLEITQLQGKLN 381
Cdd:COG2911 364 PGVLERLSGQLNGDL---RLSGTLAAPQLNGqltLDDGRLKLPAL-------GVRLTDINLRLRFDGDRLTLDGLTADSG 433

                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16130004 382 GGQVSLPGTLDATSINPRINFQPRLENVEIgtILKAFnYPISLTGKMSLAGDFSGADIDAD 442
Cdd:COG2911 434 GGTLTLSGTVDLDGLSWPADLTLKGDNLRV--LNPPD-YTATVSGDLTLTGTPDGPTLSGN 491
TamB COG2911
Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, ...
 65-445 2.92e-04

Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442155 [Multi-domain]  Cd Length: 766  Bit Score: 43.88  E-value: 2.92e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004  65 SGRMSLTAQGasqPLVRADNMRLDVALLPLLSHQLSVKQVMLKGAviqltpqteavrsedapVAPRDNTLPDLSDDRGWS 144
Cdd:COG2911   4 GGGLTLRDDG---VDLEADRLRLDWSPLALLRGRLCIDELALSAS-----------------LDGDRLRLDNLDLDAPEG 63

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004 145 FDISSLKVADSVLVFQHEDDEQVTIRNIRLQMEqdpqhRGSFEFSGRVNRDQRDLTISLNG------------------- 205
Cdd:COG2911  64 ALSGLLDLVQATLDAEGLDLASSALDDLDLRSG-----GNRLTLSGNLSAASLDGDLDLDApdladlaallpglagslsg 138

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004 206 --------TVDASDYPHDLTAAIEQINWQLQ-----GADLPKQGIQGQGSF--QAQWQESHK-RLSFNQISLTANDSTLS 269
Cdd:COG2911 139 dgldslslDADGTLAQHRLDLDAKGEPASLSlalsgGLDRDDGGTLSRLDFlnTGRWGLAAPaTLSYDDGRVTLGPLCLA 218

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004 270 GQAQVTL--TEKPEWQLRLQFPQLNLDNL-------IPLNETANGE-----NGAAQQGQSQSTLPRPVISSRIDEPAYQG 335
Cdd:COG2911 219 GGGSLCLsgTLGGTLDLQLRLKNLPLALLnpflpddLGLSGTLNGDadlsgGLANPQGDASLSLSGDLTLNDGLGGLPLG 298

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130004 336 LQGFTADILLQASNVRWR------GMNFTDVATQMTNKSGLLEITQLQGKLNGGQVSLP--------------GTLDA-- 393
Cdd:COG2911 299 LGDLTLNARLANGRLTLDltldggGLGTLSLSGSVPLADGLPPSAPLDGNLRLDNLDLAllnpllpgvlerlsGQLNGdl 378

                       410       420       430       440       450
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 16130004 394 ----TSINPRINFQPRLENVEigtiLKAFNYPISLTGkMSLAGDFSGADIDADAFR 445
Cdd:COG2911 379 rlsgTLAAPQLNGQLTLDDGR----LKLPALGVRLTD-INLRLRFDGDRLTLDGLT 429
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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