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Conserved domains on  [gi|90111387|ref|NP_416610|]
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periplasmic protein involved in nickel/cobalt export [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

RcnB family protein( domain architecture ID 10009312)

RcnB family protein similar to Escherichia coli nickel/cobalt homeostasis protein RcnB that may act by modulating RcnA-mediated export of nickel and cobalt ions to avoid excess efflux

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RcnB COG5455
Periplasmic regulator RcnB of Ni and Co efflux [Inorganic ion transport and metabolism];
45-107 2.84e-27

Periplasmic regulator RcnB of Ni and Co efflux [Inorganic ion transport and metabolism];


:

Pssm-ID: 444206 [Multi-domain]  Cd Length: 121  Bit Score: 96.71  E-value: 2.84e-27
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 90111387  45 DFKHFKPGDTVPEMYRTDEYNIKQWQLRNLPAPDAGTHWTYMGGAYVLISDTDGKIIKAYDGE 107
Cdd:COG5455  59 DYKRWRRGDRLPPEYRGRRYVVNDWRRYGLPAPPRGYHWVRVGGDYVLVAIATGIIVSIVLGR 121
 
Name Accession Description Interval E-value
RcnB COG5455
Periplasmic regulator RcnB of Ni and Co efflux [Inorganic ion transport and metabolism];
45-107 2.84e-27

Periplasmic regulator RcnB of Ni and Co efflux [Inorganic ion transport and metabolism];


Pssm-ID: 444206 [Multi-domain]  Cd Length: 121  Bit Score: 96.71  E-value: 2.84e-27
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 90111387  45 DFKHFKPGDTVPEMYRTDEYNIKQWQLRNLPAPDAGTHWTYMGGAYVLISDTDGKIIKAYDGE 107
Cdd:COG5455  59 DYKRWRRGDRLPPEYRGRRYVVNDWRRYGLPAPPRGYHWVRVGGDYVLVAIATGIIVSIVLGR 121
RcnB pfam11776
Nickel/cobalt transporter regulator; RcnB is a family of Proteobacteria proteins. RcnB is ...
 52-102 7.57e-19

Nickel/cobalt transporter regulator; RcnB is a family of Proteobacteria proteins. RcnB is required for maintaining metal ion homeostasis, in conjunction with the efflux pump RcnA, family NicO, pfam03824.


Pssm-ID: 432066  Cd Length: 51  Bit Score: 73.37  E-value: 7.57e-19
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 90111387    52 GDTVPEMYRTDEYNIKQWQLRNLPAPDAGTHWTYMGGAYVLISDTDGKIIK 102
Cdd:pfam11776   1 GDRLPPEYRGRRYVVDDYRRYHLPAPPRGYHWVRIGGDYVLVAIATGRIVD 51
 
Name Accession Description Interval E-value
RcnB COG5455
Periplasmic regulator RcnB of Ni and Co efflux [Inorganic ion transport and metabolism];
45-107 2.84e-27

Periplasmic regulator RcnB of Ni and Co efflux [Inorganic ion transport and metabolism];


Pssm-ID: 444206 [Multi-domain]  Cd Length: 121  Bit Score: 96.71  E-value: 2.84e-27
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 90111387  45 DFKHFKPGDTVPEMYRTDEYNIKQWQLRNLPAPDAGTHWTYMGGAYVLISDTDGKIIKAYDGE 107
Cdd:COG5455  59 DYKRWRRGDRLPPEYRGRRYVVNDWRRYGLPAPPRGYHWVRVGGDYVLVAIATGIIVSIVLGR 121
RcnB pfam11776
Nickel/cobalt transporter regulator; RcnB is a family of Proteobacteria proteins. RcnB is ...
 52-102 7.57e-19

Nickel/cobalt transporter regulator; RcnB is a family of Proteobacteria proteins. RcnB is required for maintaining metal ion homeostasis, in conjunction with the efflux pump RcnA, family NicO, pfam03824.


Pssm-ID: 432066  Cd Length: 51  Bit Score: 73.37  E-value: 7.57e-19
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 90111387    52 GDTVPEMYRTDEYNIKQWQLRNLPAPDAGTHWTYMGGAYVLISDTDGKIIK 102
Cdd:pfam11776   1 GDRLPPEYRGRRYVVDDYRRYHLPAPPRGYHWVRIGGDYVLVAIATGRIVD 51
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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