|
Name |
Accession |
Description |
Interval |
E-value |
| PRK09752 |
PRK09752 |
AIDA-I family autotransporter YfaL; |
1-1250 |
0e+00 |
|
AIDA-I family autotransporter YfaL;
Pssm-ID: 182059 [Multi-domain] Cd Length: 1250 Bit Score: 2219.89 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 1 MRIIFLRKEYLSLLPSMIASLFSANGVAAVTDSCQGYDVKASCQASRQSLSGITQDWSIADGQWLVFSDMTNNASGGAVF 80
Cdd:PRK09752 1 MRIIFLRKEYLSLLPSMIASLFSANGVAAVIDSCQGYDIKASCQASRQSLSGITQDWSIADGQWLVFSDMTNNASGGAVF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 81 LQQGAEFSLLPENETGMTLFANNTVTGEYNNGGAIFAKENSTLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAVDLRVTNA 160
Cdd:PRK09752 81 LQQGAEFTLSPENETGMTLFANNTVSGEYNNGGAIFAKENSTLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAVDLRVTNA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 161 MFRNNIANDGKGGAIYTINNDVYLSDVIFDNNQAYTSTSYSDGDGGAIDVTDNNSDSKHPSGYTIVNNTAFTNNTAEGYG 240
Cdd:PRK09752 161 MFRNNIANDGKGGAIYTINNDVYLSDVIFDNNQAYTSTSYSDGDGGAIDVTDNNSDSKHPSGYTIINNTAFTNNTAEGYG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 241 GAIYTNSVTAPYLIDISVDDSYSQNGGVLVDENNSAAGYGDGPSSAAGGFMYLGLSEVTFDIADGKTLVIGNTENDGAVD 320
Cdd:PRK09752 241 GAIYTNSATAPYLIDISVDDSYSQNGGVLVDENNSAAGYGDGPSSAAGGFMYLGLSEVTFDIADGKTLVIGNTENDGAVD 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 321 SIAGTGLITKTGSGDLVLNADNNDFTGEMQIENGEVTLGRSNSLMNVGDTHCQDDPQDCYGLTIGSIDQYQNQAELNVGS 400
Cdd:PRK09752 321 SIAGTGLITKTGSGDLVLNADNNDFTGEMQIENGEVTLGRSNSLMNVGDTHCQDDPQDCYGLTIGSIDKYQNQAELNVGS 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 401 TQQTFVHALTGFQNGTLNIDAGGNVTVNQGSFAGIIEGAGQLTIAQNGSYVLAGAQSMALTGDIVVDDGAVLSLEGDAAD 480
Cdd:PRK09752 401 TQQTFVHSLTGFQNGTLNIDAGGNVTVNQGSFAGTIEGAGQLTIAQNGSYVLAGAQSMALTGDIVVDDGAVLSLEGDAAD 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 481 LTALQDDPQSIVLNGGVLDLSDFSTWQSGTSYNDGLEVSGSSGTVIGSQDVVDLAGGDNLHIGGDGKDGVYVVVDASDGQ 560
Cdd:PRK09752 481 LRALQDDPQSIVLNGGVLDLSDFSTWQSGTSYNDGLEVSGSSGTVIGSQDVVDLAGGDDLHIGGDGKDGVYVVIDAGDGQ 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 561 VSLANNNSYLGTTQIASGTLMVSDNSQLGDTHYNRQVIFTDKQQESVMEITSDVDTRSDAAGHGRDIEMRADGEVAVDAG 640
Cdd:PRK09752 561 VSLANNNSYLGTTQIASGTLMVSDNSQLGDTHYNRQVIFTDKQQESVMEITADVDTRSTTTGHGRDIEMRADGEVAVDAG 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 641 VDTQWGALMADSSGQHQDEGSTLTKTGAGTLELTASGTTQSAVRVEEGTLKGDVADILPYASSLWVGDGATFVTGADQDI 720
Cdd:PRK09752 641 VDTQWGALMADSSGQHQDEGSTLTKTGAGTLELTASGTTQSAVRVEEGTLKGDVADIIPYASSLWVGDGATFVTGADQDI 720
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 721 QSIDAISSGTIDISDGTVLRLTGQDTSVALNASLFNGDGTLVNATDGVTLTGELNTNLETDSLTYLSNVTVNGNLTNTSG 800
Cdd:PRK09752 721 QSIDATSSGTIDISDGTVLRLTGQDTSVALNASLFNGDGTLVNATDGVTLTGELNTNLETDSLTYLSDVTVNGNLTNTSG 800
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 801 AVSLQNGVAGDTLTVNGDYTGGGTLLLDSELNGDDSVSDQLVMNGNTAGNTTVVVNSITGIGEPTSTGIKVVDFAADPTQ 880
Cdd:PRK09752 801 AVSLQNGVAGDTLTVNGDYTGGGTLLLDSELNGDDSVSDQLVLNGNTAGNTTVVVNSITGIGEPTSTGIKVVDFAADPTQ 880
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 881 FQNNAQFSLAGSGYVNMGAYDYTLVEDNNDWYLRSQEVTPPSPPDPDPTPDPDPTPDPDPTPDPEPTPAYQPVLNAKVGG 960
Cdd:PRK09752 881 FQNNAQFSLAGSGYVNMGAYDYTLVEDNNDWYLRSQEVTPPSPPDPDPTPDPDPTPDPDPTPDPEPTPAYQPVLNAKVGG 960
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 961 YLNNLRAANQAFMMERRDHAGGDGQTLNLRVIGGDYHYTAAGQLAQHEDTSTVQLSGDLFSGRWGTDGEWMLGIVGGYSD 1040
Cdd:PRK09752 961 YLNNLRAANQAFMMERRDHAGGDGQTLNLRVIGGDYHYTAAGQLAQHEDTSTVQLSGDLFSGRWGDDGEWMLGIVGGYSD 1040
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 1041 NQGDSRSNMTGTRADNQNHGYAVGLTSSWFQHGNQKQGAWLDSWLQYAWFSNDVSEQEDGTDHYHSSGIIASLEAGYQWL 1120
Cdd:PRK09752 1041 NQGDSRSNMTGTRADNQNHGYAVGLTSSWFQHGNQKQGAWLDSWLQYAWFNNDVSEQEDGTDHYHSSGIIASLEAGYQWL 1120
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 1121 PGRGVVIEPQAQVIYQGVQQDDFTAANRARVSQSQGDDIQTRLGLHSEWRTAVHVIPTLDLNYYHDPHSTEIEEDGSTIS 1200
Cdd:PRK09752 1121 PGRGVVIEPQAQVIYQGVQQDDFTAANHARVSQSQGDDIQTRLGLHSEWRTAVHVIPTLDLNYYHDPHSTEIEEDGSTIS 1200
|
1210 1220 1230 1240 1250
....*....|....*....|....*....|....*....|....*....|
gi 16130168 1201 DDAVKQRGEIKVGVTGNISQRVSLRGSVAWQKGSDDFAQTAGFLSMTVKW 1250
Cdd:PRK09752 1201 DDAVKQRGEIKVGVTGNISQRVSLRGSVAWQKGSDDFAQTAGFLSMTVKW 1250
|
|
| autotrans_barl |
TIGR01414 |
outer membrane autotransporter barrel domain; A number of Gram-negative bacterial proteins, ... |
806-1250 |
4.90e-91 |
|
outer membrane autotransporter barrel domain; A number of Gram-negative bacterial proteins, mostly found in pathogens and associated with virulence, contain a conserved C-terminal domain that integrates into the outer membrane and enables the N-terminal region to be delivered across the membrane. This C-terminal autotransporter domain is about 400 amino acids in length and includes the aromatic amino acid-rich OMP signal, typically ending with a Phe or Trp residue, at the extreme C-terminus. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 273608 [Multi-domain] Cd Length: 431 Bit Score: 300.45 E-value: 4.90e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 806 NGVAGDTLTVNGDYTGGGTLLLDSELNGDDSVSDQLVMNGNTAGNTTVVVNSITGIGEPTSTGIKVVDfaadpTQFQNNA 885
Cdd:TIGR01414 1 PGGAFNTLTVNGLYTGNGGFVMNTDLGGDNSQTDRLVVNGNASGTTGVVVNNIGGEGAQTGDGITLVT-----VNGGSDA 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 886 QFSLAGsGYVNMGAYDYTLV----EDNNDWYLRSQEvtppsppdpdpTPDPDPTPDPDPTPDPEPTPAYQPVLNAKVGGY 961
Cdd:TIGR01414 76 AFTLAN-GKVDAGAYTYTLYkngtEDNNNWYLTSSL-----------PDLTPPGQQLSPTYRAEAGSYAANANAALFLAE 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 962 LNNLRAANQAFMMERRDHaggdGQTLNLRVIGGDYHYTA-AGQLAQHEDTSTVQLSGDLFSGRWGtDGEWMLGIVGGYSD 1040
Cdd:TIGR01414 144 LDTLRQRMGDLRSAARDA----GNGVWARIFGGDNHLDGdAGAAGYDQNTTGVQLGGDILLAGNA-DGDLHVGLMAGYAK 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 1041 NQGDSRSNMTGtrADNQNHGYAVGLTSSWFQHGnqkqGAWLDSWLQYAWFSNDVSEQEDG---TDHYHSSGIIASLEAGY 1117
Cdd:TIGR01414 219 ADIKTRSYKYG--GKGKVDGYGLGLYGTWLQDS----GAYVDGVLQYSRFRNDVSSTGSNgkvSGKYNSNGFTASLEAGY 292
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 1118 QWLPG-RGVVIEPQAQVIYQGVQQDDFTAANRARVSQSQGDDIQTRLGLHSEWR----TAVHVIPTLDLNYYHDPH-STE 1191
Cdd:TIGR01414 293 RYNLGgNGWYVEPQAQLSYFGVSGDDYKESNGTRVLGGGGDSLQGRLGLRVGYQfdlgTGRAVKPYLKANVLHEFKgGTG 372
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 16130168 1192 IEEDGSTISDDAVKQRGEIKVGVTGNISQRVSLRGSVAWQKGSDDFAQTAGFLSMTVKW 1250
Cdd:TIGR01414 373 VRVNGVTIRNDFSGTRAEYGVGVNAKIKDNLSLYADVDYQKGGKKYTDNQGNLGVRYSF 431
|
|
| AidA |
COG3468 |
Autotransporter adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular ... |
410-1250 |
1.00e-78 |
|
Autotransporter adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442691 [Multi-domain] Cd Length: 846 Bit Score: 277.98 E-value: 1.00e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 410 TGFQNGTLNIDAGGNVTVNQGSFAGIIEGAGQLTIAQNGSYVLAGAQSMALTGDIVVDDGAVLSLEGDAADLTALQDDPQ 489
Cdd:COG3468 1 TASGGGGGATGLGGGGTGGGGGLGGTGGGNAGLGIGNGGGGGAASGSGAGGVAGNGGGGGGGAGGGGGGAGSGGGLAGAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 490 SIVLNGGVLDLSDFSTWQSGTSYNDGLEVSGSSGTVIGSQDVVDLAGGDNLHIGGDGKDGVYVVVDASDGQVSLANNNSY 569
Cdd:COG3468 81 SGGTGGNSTGGGGGNSGTGGTGGGGGGGGSGNGGGGGGGGGGGGTGGGGGGGTGSAGGGGGGGGGGTGVGGTGAAAAGGG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 570 LGTTQIASGTLMVSDNSQLGDTHYNRQVIFTDKQQESVMEITSDVDTRSDAAGHGRDIEMRADGEVAVDAGVDTQWGALM 649
Cdd:COG3468 161 TGSGGGGSGGGGGAGGGGGGGAGGSGGAGSTGSGAGGGGGGSGGGGGAAGTGGGGGGGGGAGGATGGAGSGGNTGGGVGG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 650 ADSSGQHQDEGSTLTKTGAGTLELTASGTTQSAVRVEEGTLKGDVADILPYASSLWVGDGATFVTGADQDIQSIDAISSG 729
Cdd:COG3468 241 GGGSAGGTGGGGLTGGGAAGTGGGGGGTGTGSGGGGGGGANGGGSGGGGGASGTGGGGTASTGGGGGGGGGNGGGGGGGS 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 730 TIDISDGTVLRLTGQDTSVALNASLFNGDGTLVNATDGVTLTGELNTNLETDSLTYLSNVTVNGNLTNTSGAVSLQNGV- 808
Cdd:COG3468 321 NAGGGSGGGGGGGGGGGGGGTTLNGAGSAGGGTGAALAGTGGSGSGGGGGGGSGGGGGAGGGGANTGSDGVGTGLTTGGt 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 809 ------------------AGDTLTVNGDYTG-GGTLLLDSELNGDDSVSDQLVMNGNTAGNTTVVVNSITGIGEPTSTGI 869
Cdd:COG3468 401 gnnggggvgggggggltlTGGTLTVNGNYTGnNGTLVLNTVLGDDNSPTDRLVVNGNTSGTTGVRVNNAGGLGAQTVNGI 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 870 KVVDfaadpTQFQNNAQFSLagSGYVNMGAYDYTLV-----EDNNDWYLRSQEVTPPSPpdpdptpdpdptpdpdptpdp 944
Cdd:COG3468 481 EVVE-----VNGASDGAFTL--GGRVVAGAYEYTLYqggsgGDDGNWYLRSTLTPPDPP--------------------- 532
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 945 eptpayQPVLNAKVGGYLNNLRAANQAFMMER----------RDHAGGDGQTLNLRVIGGDYHY-TAAGQLAQHEDTSTV 1013
Cdd:COG3468 533 ------TPVYRPEVPSYLANPAAANGLFELGTlhdrlgerryTDTGESDNSGAWLRVEGGHNRSrDSSGQLDYDSNRYGL 606
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 1014 QLSGDLFSGRWGtDGEWMLGIVGGYSDNQGDSRSNMTGTrADNQNHGYAVGLTSSWFQHgnqkQGAWLDSWLQYAWFSND 1093
Cdd:COG3468 607 QLGGDLLQWEDG-GGRLHVGVMAGYGNGDSDVRSRATGT-GKGDVDGYSLGLYGTWYGN----NGFYVDGVLQYSWFDND 680
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 1094 VSEQEDG--TDHYHSSGIIASLEAGYQWLPGRGVVIEPQAQVIYQGVQQDDFTAANRARVSQSQGDDIQTRLGLH----S 1167
Cdd:COG3468 681 VSSDDLGgvTGSYDGNGYSASLEAGYPFKLGEGWSLEPQAQLIYQGVDFDDFTDSNGTRVSGDDGDSLQGRLGLRlgyeF 760
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 1168 EWRTAVHVIPTLDLNYYHDP-HSTEIEEDGSTISDDAVKQRGEIKVGVTGNISQRVSLRGSVAWQKGSDDFAQTAGFLSM 1246
Cdd:COG3468 761 HWDDGRALQPYLEANWLHEFlGDNSVTVNGVSFSQDGSGTWGELGLGVTGQLNKNLSLYGDVGYQTGLDGYDSSDTSGNL 840
|
....
gi 16130168 1247 TVKW 1250
Cdd:COG3468 841 GVRY 844
|
|
| PL2_Passenger_AT |
cd01344 |
Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 2, of ... |
729-916 |
7.57e-34 |
|
Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 2, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of the nonprotease autotransporters, Ag43, AIDA-1 and IcsA, as well as, the less characterized ShdA, MisL, and BapA autotransporters.
Pssm-ID: 238654 [Multi-domain] Cd Length: 188 Bit Score: 128.96 E-value: 7.57e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 729 GTIDISDGTVL--RLTGQDTSVALNASLFnGDGTLVNATDG-VTLTGELNTNLETDSltylsnVTVNGNLTNtSGAVSLQ 805
Cdd:cd01344 1 GTITGNGGWKLggDLTLGGGALTLTTSLT-LTGTLLTGGAGtLTLDSTSTWNITGTS------TLNVGNLTN-AGTIDLG 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 806 NG-VAGDTLTVNGDYTG-GGTLLLDSELNGDDSVSDQLVMNGNTAGNTTVVVNSITGIGEPTSTGIKVVDFAAdptqFQN 883
Cdd:cd01344 73 NGsPAGGTLTITGNYTGnGGTLRLNTVLGDDDSPTDRLVIDGDASGTTRVAVNNAGGSGATTGNGIEVVEVGG----TSS 148
|
170 180 190
....*....|....*....|....*....|....*...
gi 16130168 884 NAQFSLAgsGYVNMGAYDYTLV-----EDNNDWYLRSQ 916
Cdd:cd01344 149 NGAFSLA--GRVVAGAYEYRLYrggvsGNDGNWYLRSE 184
|
|
| auto_AIDA-I |
NF033176 |
autotransporter adhesin AIDA-I; |
747-1233 |
5.94e-33 |
|
autotransporter adhesin AIDA-I;
Pssm-ID: 380183 [Multi-domain] Cd Length: 1287 Bit Score: 139.02 E-value: 5.94e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 747 SVALNASLFNGDGTLVNATDGVTLTGELNT-------------NLETDS-----LTYLSNVTVNGNLTNTSGAV-SLQNG 807
Cdd:NF033176 767 SAVVNADMAVSQNAYINISDQATINGSVNNkgsvvinnsiingNITNDAdlsfgTAKLLSATVNGSLVNNKNIIlNPTKE 846
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 808 VAGDTLTVNgDYTG--GGTLLLDSELNGDDSVSDQLVMNGNTAGNTTVVVNSITGIGEPTSTGIKVVDFAADptqfqNNA 885
Cdd:NF033176 847 SAGNTLTVS-NYTGtpGSVISLGGVLEGDNSLTDRLVVKGNTSGQSDIVYVNEGGSGGQTIEGINIISVEGN-----SDA 920
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 886 QFSLAGSgyVNMGAYDYTLVE------DNNDWYLRSQevtppsppdpdptpdpdptpdpdptPDPEPTPAYQPvlnaKVG 959
Cdd:NF033176 921 EFSLKNR--VVAGAYDYTLQKgnvsgtDKKGWYLTSH-------------------------LPTSDTRQYRP----ENG 969
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 960 GYLNNLRAANQAFMM---ERR------DHAGGDGQTLNLRVIGGdyhyTAAGQLAQHEDTSTV-----QLSGDLFSGRWG 1025
Cdd:NF033176 970 SYATNMALANSLFLMdlnERKqfsavnDNTQPESASVWMKITGG----RTSGKLSDGQNKTTTnqfinQLGGDIYKYHAE 1045
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 1026 TDGEWMLGIVGGYSDNQGDSRSNMTGTRADNQNHGYAVGLTSSWFQHGNQKQGAWLDSWLQYAWFSNDVSEQEDGTDHYH 1105
Cdd:NF033176 1046 KLGDFTLGIMGGYANAKGKTINHTSKKGARNTLDGYSAGLYGTWYQNGANATGLFAETWMQYNWFNASVKGDGLEEEKYN 1125
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 1106 SSGIIASLEAGYQ-----WLPGRGVV----IEPQAQVIYQGVQQDDFTAANRARVSQSQGDDIQTRLGLHSEWR------ 1170
Cdd:NF033176 1126 LNGLTASVGGGYNlnvhtWTSPEGIKgefwLQPHLQAVWMGVTPDTHQEDNGTVVQGTGKNNLQTKAGIRASWKvkssld 1205
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16130168 1171 --TAVHVIPTLDLNYYHDPHSTEIEEDGSTISDDAVKQRGEIKVGVTGNISQRVSLRGSVAWQKG 1233
Cdd:NF033176 1206 kdTGREFRPYIEANWIHNTHEFGVKMSGDNQLLSGSRNQGEIKTGIEGVITQNLSVNGGVAYQAG 1270
|
|
| Autotransporter |
pfam03797 |
Autotransporter beta-domain; Secretion of protein products occurs by a number of different ... |
989-1228 |
3.47e-23 |
|
Autotransporter beta-domain; Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C terminus of the proteins it occurs in. The N terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.
Pssm-ID: 461054 [Multi-domain] Cd Length: 255 Bit Score: 100.15 E-value: 3.47e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 989 LRVIGGDYHY-TAAGQLAQHEDTSTVQLSGDLFSGrwgtdGEWMLGIVGGYSDnqgdSRSNMTGTRADNQNHGYAVGLTS 1067
Cdd:pfam03797 3 ARGFGGRGKQdGDGGAAGYDADTGGLQVGADYRLG-----DNLRLGVAFGYSR----SDADVDGRGGSGDSDSYSLGLYG 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 1068 SWFQHGnqkqGAWLDSWLQYAWFSNDVS-------EQEDGTDHYHSSGIIASLEAGYQWLPGRGVVIEPQAQVIYQGVQQ 1140
Cdd:pfam03797 74 TYYGDG----GWYLDGGLGYGWHDNDTRrsvdlggFSETAKGDYDGNGFGASLEAGYRFALGGGWTLEPFAGLAYVRLRL 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 1141 DDFTAANRA---RVSQSQGDDIQTRLGLHSEWR---TAVHVIPTLDLNYYHDPHSTEIEEDGS-----------TISDDA 1203
Cdd:pfam03797 150 DGFTESGGAaalSVDSQSYDSLTGRLGLRLSYTfdlGGGTLTPYARLGWRHEFGDDDPVTTAAfaglsgagsftVAGADL 229
|
250 260
....*....|....*....|....*
gi 16130168 1204 VKQRGEIKVGVTGNISQRVSLRGSV 1228
Cdd:pfam03797 230 ARDSLELGAGLSAQLSDNLSLYANY 254
|
|
| Autotransporter |
smart00869 |
Autotransporter beta-domain; Secretion of protein products occurs by a number of different ... |
989-1239 |
4.58e-23 |
|
Autotransporter beta-domain; Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type IV pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different peptidase is used and in some cases no cleavage occurs.
Pssm-ID: 214872 [Multi-domain] Cd Length: 268 Bit Score: 100.34 E-value: 4.58e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 989 LRVIGGDYHYTAAGQLAQHE---DTSTVQLSGDLfsgRWGTDGEWMLGIVGGYSDNQGDSRSNMTGTRADNqnHGYAVGL 1065
Cdd:smart00869 1 GRGLGGFLRQDSSGSGGSAGfdyDSYGLQLGADY---RLSDNGNLSLGFAAGYGNSKVDFSGNKGSGKGDV--DSYGLGL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 1066 TSSWFQHgnqkQGAWLDSWLQYAWFSNDVS------EQEDGTDHYHSSGIIASLEAGYQWLPGRGVVIEPQAQVIYQGVQ 1139
Cdd:smart00869 76 YAGYSLG----NGLYLDAQLGYGRSDNDTKrkvtlgGAGRAKGSYDGTGYGASLEAGYRFYLGGGLTLTPFAGLAYSRVR 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 1140 QDDFT----AANRARVSQSQGDDIQTRLGLHSEWRTAVH----VIPTLDLNYYHD---------PHSTEIEEDGSTISDD 1202
Cdd:smart00869 152 QDGFTesggGAFGLSVDSQSLDSLSLPLGLRLEYRLALGdgatLTPYLRLAYVHDfyddnpvvtASLLGSGASFTTSGTD 231
|
250 260 270
....*....|....*....|....*....|....*..
gi 16130168 1203 AVKQRGEIKVGVTGNISQRVSLRGSVAWQKGSDDFAQ 1239
Cdd:smart00869 232 LDRNAAELGLGLSAKLSNGLSLSLNYDGEFGGSSRSH 268
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK09752 |
PRK09752 |
AIDA-I family autotransporter YfaL; |
1-1250 |
0e+00 |
|
AIDA-I family autotransporter YfaL;
Pssm-ID: 182059 [Multi-domain] Cd Length: 1250 Bit Score: 2219.89 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 1 MRIIFLRKEYLSLLPSMIASLFSANGVAAVTDSCQGYDVKASCQASRQSLSGITQDWSIADGQWLVFSDMTNNASGGAVF 80
Cdd:PRK09752 1 MRIIFLRKEYLSLLPSMIASLFSANGVAAVIDSCQGYDIKASCQASRQSLSGITQDWSIADGQWLVFSDMTNNASGGAVF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 81 LQQGAEFSLLPENETGMTLFANNTVTGEYNNGGAIFAKENSTLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAVDLRVTNA 160
Cdd:PRK09752 81 LQQGAEFTLSPENETGMTLFANNTVSGEYNNGGAIFAKENSTLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAVDLRVTNA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 161 MFRNNIANDGKGGAIYTINNDVYLSDVIFDNNQAYTSTSYSDGDGGAIDVTDNNSDSKHPSGYTIVNNTAFTNNTAEGYG 240
Cdd:PRK09752 161 MFRNNIANDGKGGAIYTINNDVYLSDVIFDNNQAYTSTSYSDGDGGAIDVTDNNSDSKHPSGYTIINNTAFTNNTAEGYG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 241 GAIYTNSVTAPYLIDISVDDSYSQNGGVLVDENNSAAGYGDGPSSAAGGFMYLGLSEVTFDIADGKTLVIGNTENDGAVD 320
Cdd:PRK09752 241 GAIYTNSATAPYLIDISVDDSYSQNGGVLVDENNSAAGYGDGPSSAAGGFMYLGLSEVTFDIADGKTLVIGNTENDGAVD 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 321 SIAGTGLITKTGSGDLVLNADNNDFTGEMQIENGEVTLGRSNSLMNVGDTHCQDDPQDCYGLTIGSIDQYQNQAELNVGS 400
Cdd:PRK09752 321 SIAGTGLITKTGSGDLVLNADNNDFTGEMQIENGEVTLGRSNSLMNVGDTHCQDDPQDCYGLTIGSIDKYQNQAELNVGS 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 401 TQQTFVHALTGFQNGTLNIDAGGNVTVNQGSFAGIIEGAGQLTIAQNGSYVLAGAQSMALTGDIVVDDGAVLSLEGDAAD 480
Cdd:PRK09752 401 TQQTFVHSLTGFQNGTLNIDAGGNVTVNQGSFAGTIEGAGQLTIAQNGSYVLAGAQSMALTGDIVVDDGAVLSLEGDAAD 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 481 LTALQDDPQSIVLNGGVLDLSDFSTWQSGTSYNDGLEVSGSSGTVIGSQDVVDLAGGDNLHIGGDGKDGVYVVVDASDGQ 560
Cdd:PRK09752 481 LRALQDDPQSIVLNGGVLDLSDFSTWQSGTSYNDGLEVSGSSGTVIGSQDVVDLAGGDDLHIGGDGKDGVYVVIDAGDGQ 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 561 VSLANNNSYLGTTQIASGTLMVSDNSQLGDTHYNRQVIFTDKQQESVMEITSDVDTRSDAAGHGRDIEMRADGEVAVDAG 640
Cdd:PRK09752 561 VSLANNNSYLGTTQIASGTLMVSDNSQLGDTHYNRQVIFTDKQQESVMEITADVDTRSTTTGHGRDIEMRADGEVAVDAG 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 641 VDTQWGALMADSSGQHQDEGSTLTKTGAGTLELTASGTTQSAVRVEEGTLKGDVADILPYASSLWVGDGATFVTGADQDI 720
Cdd:PRK09752 641 VDTQWGALMADSSGQHQDEGSTLTKTGAGTLELTASGTTQSAVRVEEGTLKGDVADIIPYASSLWVGDGATFVTGADQDI 720
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 721 QSIDAISSGTIDISDGTVLRLTGQDTSVALNASLFNGDGTLVNATDGVTLTGELNTNLETDSLTYLSNVTVNGNLTNTSG 800
Cdd:PRK09752 721 QSIDATSSGTIDISDGTVLRLTGQDTSVALNASLFNGDGTLVNATDGVTLTGELNTNLETDSLTYLSDVTVNGNLTNTSG 800
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 801 AVSLQNGVAGDTLTVNGDYTGGGTLLLDSELNGDDSVSDQLVMNGNTAGNTTVVVNSITGIGEPTSTGIKVVDFAADPTQ 880
Cdd:PRK09752 801 AVSLQNGVAGDTLTVNGDYTGGGTLLLDSELNGDDSVSDQLVLNGNTAGNTTVVVNSITGIGEPTSTGIKVVDFAADPTQ 880
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 881 FQNNAQFSLAGSGYVNMGAYDYTLVEDNNDWYLRSQEVTPPSPPDPDPTPDPDPTPDPDPTPDPEPTPAYQPVLNAKVGG 960
Cdd:PRK09752 881 FQNNAQFSLAGSGYVNMGAYDYTLVEDNNDWYLRSQEVTPPSPPDPDPTPDPDPTPDPDPTPDPEPTPAYQPVLNAKVGG 960
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 961 YLNNLRAANQAFMMERRDHAGGDGQTLNLRVIGGDYHYTAAGQLAQHEDTSTVQLSGDLFSGRWGTDGEWMLGIVGGYSD 1040
Cdd:PRK09752 961 YLNNLRAANQAFMMERRDHAGGDGQTLNLRVIGGDYHYTAAGQLAQHEDTSTVQLSGDLFSGRWGDDGEWMLGIVGGYSD 1040
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 1041 NQGDSRSNMTGTRADNQNHGYAVGLTSSWFQHGNQKQGAWLDSWLQYAWFSNDVSEQEDGTDHYHSSGIIASLEAGYQWL 1120
Cdd:PRK09752 1041 NQGDSRSNMTGTRADNQNHGYAVGLTSSWFQHGNQKQGAWLDSWLQYAWFNNDVSEQEDGTDHYHSSGIIASLEAGYQWL 1120
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 1121 PGRGVVIEPQAQVIYQGVQQDDFTAANRARVSQSQGDDIQTRLGLHSEWRTAVHVIPTLDLNYYHDPHSTEIEEDGSTIS 1200
Cdd:PRK09752 1121 PGRGVVIEPQAQVIYQGVQQDDFTAANHARVSQSQGDDIQTRLGLHSEWRTAVHVIPTLDLNYYHDPHSTEIEEDGSTIS 1200
|
1210 1220 1230 1240 1250
....*....|....*....|....*....|....*....|....*....|
gi 16130168 1201 DDAVKQRGEIKVGVTGNISQRVSLRGSVAWQKGSDDFAQTAGFLSMTVKW 1250
Cdd:PRK09752 1201 DDAVKQRGEIKVGVTGNISQRVSLRGSVAWQKGSDDFAQTAGFLSMTVKW 1250
|
|
| autotrans_barl |
TIGR01414 |
outer membrane autotransporter barrel domain; A number of Gram-negative bacterial proteins, ... |
806-1250 |
4.90e-91 |
|
outer membrane autotransporter barrel domain; A number of Gram-negative bacterial proteins, mostly found in pathogens and associated with virulence, contain a conserved C-terminal domain that integrates into the outer membrane and enables the N-terminal region to be delivered across the membrane. This C-terminal autotransporter domain is about 400 amino acids in length and includes the aromatic amino acid-rich OMP signal, typically ending with a Phe or Trp residue, at the extreme C-terminus. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 273608 [Multi-domain] Cd Length: 431 Bit Score: 300.45 E-value: 4.90e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 806 NGVAGDTLTVNGDYTGGGTLLLDSELNGDDSVSDQLVMNGNTAGNTTVVVNSITGIGEPTSTGIKVVDfaadpTQFQNNA 885
Cdd:TIGR01414 1 PGGAFNTLTVNGLYTGNGGFVMNTDLGGDNSQTDRLVVNGNASGTTGVVVNNIGGEGAQTGDGITLVT-----VNGGSDA 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 886 QFSLAGsGYVNMGAYDYTLV----EDNNDWYLRSQEvtppsppdpdpTPDPDPTPDPDPTPDPEPTPAYQPVLNAKVGGY 961
Cdd:TIGR01414 76 AFTLAN-GKVDAGAYTYTLYkngtEDNNNWYLTSSL-----------PDLTPPGQQLSPTYRAEAGSYAANANAALFLAE 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 962 LNNLRAANQAFMMERRDHaggdGQTLNLRVIGGDYHYTA-AGQLAQHEDTSTVQLSGDLFSGRWGtDGEWMLGIVGGYSD 1040
Cdd:TIGR01414 144 LDTLRQRMGDLRSAARDA----GNGVWARIFGGDNHLDGdAGAAGYDQNTTGVQLGGDILLAGNA-DGDLHVGLMAGYAK 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 1041 NQGDSRSNMTGtrADNQNHGYAVGLTSSWFQHGnqkqGAWLDSWLQYAWFSNDVSEQEDG---TDHYHSSGIIASLEAGY 1117
Cdd:TIGR01414 219 ADIKTRSYKYG--GKGKVDGYGLGLYGTWLQDS----GAYVDGVLQYSRFRNDVSSTGSNgkvSGKYNSNGFTASLEAGY 292
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 1118 QWLPG-RGVVIEPQAQVIYQGVQQDDFTAANRARVSQSQGDDIQTRLGLHSEWR----TAVHVIPTLDLNYYHDPH-STE 1191
Cdd:TIGR01414 293 RYNLGgNGWYVEPQAQLSYFGVSGDDYKESNGTRVLGGGGDSLQGRLGLRVGYQfdlgTGRAVKPYLKANVLHEFKgGTG 372
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 16130168 1192 IEEDGSTISDDAVKQRGEIKVGVTGNISQRVSLRGSVAWQKGSDDFAQTAGFLSMTVKW 1250
Cdd:TIGR01414 373 VRVNGVTIRNDFSGTRAEYGVGVNAKIKDNLSLYADVDYQKGGKKYTDNQGNLGVRYSF 431
|
|
| AidA |
COG3468 |
Autotransporter adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular ... |
410-1250 |
1.00e-78 |
|
Autotransporter adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442691 [Multi-domain] Cd Length: 846 Bit Score: 277.98 E-value: 1.00e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 410 TGFQNGTLNIDAGGNVTVNQGSFAGIIEGAGQLTIAQNGSYVLAGAQSMALTGDIVVDDGAVLSLEGDAADLTALQDDPQ 489
Cdd:COG3468 1 TASGGGGGATGLGGGGTGGGGGLGGTGGGNAGLGIGNGGGGGAASGSGAGGVAGNGGGGGGGAGGGGGGAGSGGGLAGAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 490 SIVLNGGVLDLSDFSTWQSGTSYNDGLEVSGSSGTVIGSQDVVDLAGGDNLHIGGDGKDGVYVVVDASDGQVSLANNNSY 569
Cdd:COG3468 81 SGGTGGNSTGGGGGNSGTGGTGGGGGGGGSGNGGGGGGGGGGGGTGGGGGGGTGSAGGGGGGGGGGTGVGGTGAAAAGGG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 570 LGTTQIASGTLMVSDNSQLGDTHYNRQVIFTDKQQESVMEITSDVDTRSDAAGHGRDIEMRADGEVAVDAGVDTQWGALM 649
Cdd:COG3468 161 TGSGGGGSGGGGGAGGGGGGGAGGSGGAGSTGSGAGGGGGGSGGGGGAAGTGGGGGGGGGAGGATGGAGSGGNTGGGVGG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 650 ADSSGQHQDEGSTLTKTGAGTLELTASGTTQSAVRVEEGTLKGDVADILPYASSLWVGDGATFVTGADQDIQSIDAISSG 729
Cdd:COG3468 241 GGGSAGGTGGGGLTGGGAAGTGGGGGGTGTGSGGGGGGGANGGGSGGGGGASGTGGGGTASTGGGGGGGGGNGGGGGGGS 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 730 TIDISDGTVLRLTGQDTSVALNASLFNGDGTLVNATDGVTLTGELNTNLETDSLTYLSNVTVNGNLTNTSGAVSLQNGV- 808
Cdd:COG3468 321 NAGGGSGGGGGGGGGGGGGGTTLNGAGSAGGGTGAALAGTGGSGSGGGGGGGSGGGGGAGGGGANTGSDGVGTGLTTGGt 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 809 ------------------AGDTLTVNGDYTG-GGTLLLDSELNGDDSVSDQLVMNGNTAGNTTVVVNSITGIGEPTSTGI 869
Cdd:COG3468 401 gnnggggvgggggggltlTGGTLTVNGNYTGnNGTLVLNTVLGDDNSPTDRLVVNGNTSGTTGVRVNNAGGLGAQTVNGI 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 870 KVVDfaadpTQFQNNAQFSLagSGYVNMGAYDYTLV-----EDNNDWYLRSQEVTPPSPpdpdptpdpdptpdpdptpdp 944
Cdd:COG3468 481 EVVE-----VNGASDGAFTL--GGRVVAGAYEYTLYqggsgGDDGNWYLRSTLTPPDPP--------------------- 532
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 945 eptpayQPVLNAKVGGYLNNLRAANQAFMMER----------RDHAGGDGQTLNLRVIGGDYHY-TAAGQLAQHEDTSTV 1013
Cdd:COG3468 533 ------TPVYRPEVPSYLANPAAANGLFELGTlhdrlgerryTDTGESDNSGAWLRVEGGHNRSrDSSGQLDYDSNRYGL 606
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 1014 QLSGDLFSGRWGtDGEWMLGIVGGYSDNQGDSRSNMTGTrADNQNHGYAVGLTSSWFQHgnqkQGAWLDSWLQYAWFSND 1093
Cdd:COG3468 607 QLGGDLLQWEDG-GGRLHVGVMAGYGNGDSDVRSRATGT-GKGDVDGYSLGLYGTWYGN----NGFYVDGVLQYSWFDND 680
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 1094 VSEQEDG--TDHYHSSGIIASLEAGYQWLPGRGVVIEPQAQVIYQGVQQDDFTAANRARVSQSQGDDIQTRLGLH----S 1167
Cdd:COG3468 681 VSSDDLGgvTGSYDGNGYSASLEAGYPFKLGEGWSLEPQAQLIYQGVDFDDFTDSNGTRVSGDDGDSLQGRLGLRlgyeF 760
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 1168 EWRTAVHVIPTLDLNYYHDP-HSTEIEEDGSTISDDAVKQRGEIKVGVTGNISQRVSLRGSVAWQKGSDDFAQTAGFLSM 1246
Cdd:COG3468 761 HWDDGRALQPYLEANWLHEFlGDNSVTVNGVSFSQDGSGTWGELGLGVTGQLNKNLSLYGDVGYQTGLDGYDSSDTSGNL 840
|
....
gi 16130168 1247 TVKW 1250
Cdd:COG3468 841 GVRY 844
|
|
| PRK15313 |
PRK15313 |
intestinal colonization autotransporter adhesin MisL; |
741-1246 |
2.36e-50 |
|
intestinal colonization autotransporter adhesin MisL;
Pssm-ID: 237940 [Multi-domain] Cd Length: 955 Bit Score: 193.86 E-value: 2.36e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 741 LTGQDTSVALNA---SLFNGDGTLVNATDGvtlTGELNTNLETDSLTYLSNVTVNgNLTNTSGAV---SLQNGVAGDTLT 814
Cdd:PRK15313 386 LPQQNSTIKLNMtdnSRWDGASYITSATAG---TGVISVQMSDATWNMTSSSTLT-DLTLNSGATinfSHEDGEPWQTLT 461
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 815 VNGDYTG-GGTLLLDSELNGDDSVSDQLVMNGNTAGNTTVVVNSITGIGEPTSTGIKVVDFAADptqfqNNAQFSLAGSg 893
Cdd:PRK15313 462 INEDYVGnGGKLVFNTVLNDDDSETDRLQVLGNTSGNTFVAVNNIGGAGAQTIEGIEIVNVAGN-----SNGTFEKASR- 535
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 894 yVNMGAYDYTLVEDNNDWYLRS------------------------------------QEVTPPSPPDPDPTPDPDPTPD 937
Cdd:PRK15313 536 -IVAGAYDYNVVQKGKNWYLTSyiepdepiipdpvdpvipdpvipdpvdpdpvdpvipDPVIPDPVDPDPVDPEPVDPVI 614
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 938 PDPTPDPEPTPAYQPV----LNAKVGGYLNNLRAANQAFMMERRDHAGGDGQT-----------LNLRVIGGDYHYT-AA 1001
Cdd:PRK15313 615 PDPTIPDIGQSDTPPItehqFRPEVGSYLANNYAANTLFMTRLHDRLGETQYTdmltgekkvtsLWMRNVGAHTRFNdGS 694
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 1002 GQLAQHEDTSTVQLSGDLfsGRWGTDG--EWMLGIVGGYSDNQGDSRSNMTGTRADNQNHGYAVGLTSSWFQHGNQKQGA 1079
Cdd:PRK15313 695 GQLKTRINSYVLQLGGDL--AQWSTDGldRWHIGAMAGYANSQNRTLSSVSDYHSRGQVTGYSVGLYGTWYANNIDRSGA 772
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 1080 WLDSWLQYAWFSNDVSEQEDGTDHYHSSGIIASLEAGYQWLPG----RGVVIEPQAQVIYQGVQQDDFTAANRARVSQSQ 1155
Cdd:PRK15313 773 YVDTWMLYNWFDNKVMGQDQAAEKYKSKGITASVEAGYSFRLGesahQSYWLQPKAQVVWMGVQADDNREANGTLVKDDT 852
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 1156 GDDIQTRLGLHS--------EWRTAVHVIPTLDLNYYHDPHSTEIEEDGSTISDDAVKQRGEIKVGVTGNISQRVSLRGS 1227
Cdd:PRK15313 853 AGNLLTRMGVKAyinghnaiDDNKSREFQPFVEANWIHNTQPASVKMDDVSSDMRGTKNIGELKVGIEGQITPRLNVWGN 932
|
570
....*....|....*....
gi 16130168 1228 VAWQKGSDDFAQTAGFLSM 1246
Cdd:PRK15313 933 VAQQVGDQGYSNTQGLLGV 951
|
|
| PRK14849 |
PRK14849 |
autotransporter barrel domain-containing lipoprotein; |
388-1250 |
2.60e-46 |
|
autotransporter barrel domain-containing lipoprotein;
Pssm-ID: 184851 [Multi-domain] Cd Length: 1806 Bit Score: 183.01 E-value: 2.60e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 388 DQYQNQAELNVGSTQQTFVHALTGFQngtLNIDAGGNVTVNQGSFAGIIEGAGQLTIAQNGSYVLAGAQSMALTGDivvd 467
Cdd:PRK14849 948 DEVEADKTLHIAQNGTVVAEGDYGFR---LTTAPGDGLYVNYGLKALNIHGGQKLTLAEHGGAYGATADMSAKIGG---- 1020
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 468 dgavlslEGDAADLTALQddpqsIVLNGGVLDLSDFSTWQSGTSYNDGLEVSGSSGTV-IGSQDVVDLAGGDNLHIGGDG 546
Cdd:PRK14849 1021 -------EGDLAINTVRQ-----VSLSNGQNDYQGATYVQMGTLRTDADGALGNTRELnISNAAIVDLNGSTQTVETFTG 1088
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 547 KDGVYVVVDA----------SDGQVSLANNNSYLGTTQIASGtlMVSDNSQLGDTHYNRQVIFTDKQQESVMEITSD-VD 615
Cdd:PRK14849 1089 QMGSTVLFKEgaltvnkggiSQGELTGGGNLNVTGGTLAIEG--LNARYNALTSISPNAEVSLDNTQGLGRGNIANDgLL 1166
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 616 TRSDAAGHGRDiEMRADGEVAVDAGVDTQWGALMADSSGQHQ-DEGSTLTKTGAGTLeltasgttQSAVRVEEGTLKGDV 694
Cdd:PRK14849 1167 TLKNVTGELRN-SISGKGIVSATARTDVELDGDNSRFVGQFNiDTGSALSVNEQKNL--------GDASVINNGLLTIST 1237
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 695 ADILPYASSLWVGDGATFVTGADQDIQSIDAISSGTIDISDGTVlrLTGQDTSVALNASLFNGDGTLVnATDGVTLTGEL 774
Cdd:PRK14849 1238 ERSWAMTHSISGSGDVTKLGTGILTLNNDSAAYQGTTDIVGGEI--AFGSDSAINMASQHINIHNSGV-MSGNVTTAGDV 1314
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 775 ntNLETDSLTYLSNVTVNGNLTNtSGAVSL--QNGVAGDTLTVNGDYTG-GGTLLLDSELNGDDSVSDQLVMNGNTAGNT 851
Cdd:PRK14849 1315 --NVMPGGTLRVAKTTIGGNLEN-GGTVQMnsEGGKPGNVLTVNGNYTGnNGLMTFNATLGGDNSPTDKMNVKGDTQGNT 1391
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 852 TVVVNSITGIGEPTSTGIKVVDFAADPTqfqnnAQFSLAgSGYVNMGAYDYTLVE----DNNDWYLRSQevtppspPDPD 927
Cdd:PRK14849 1392 RVRVDNIGGVGAQTVNGIELIEVGGNSA-----GNFALT-TGTVEAGAYVYTLAKgkgnDEKNWYLTSK-------WDGV 1458
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 928 PTPDPDPTPDPDPTPDPEPTPAYQPvlnaKVGGYLNNLRAANQAFMMERRD-----------HAGGDGQTLNLRVIGGDY 996
Cdd:PRK14849 1459 TPPDTPDPINNPPVVDPEGPSVYRP----EAGSYISNIAAANSLFSHRLHDrlgepqyidslHSQGSASSMWMRHVGGHE 1534
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 997 HYTAA-GQLAQHEDTSTVQLSGDLFSGRWGTDGEWMLGIVGGYSDNQGDSRSNMTGTRADNQNHGYAVGLTSSWFQHGNQ 1075
Cdd:PRK14849 1535 RSRAGdGQLNTQANRYVLQLGGDLAQWSSNAQDRWHLGVMAGYANQHSNTQSNRVGYKSDGRISGYSAGLYATWYQNDAN 1614
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 1076 KQGAWLDSWLQYAWFSNDVSEQEDGTDHYHSSGIIASLEAGYQWLPG---------RGVVIEPQAQVIYQGVQQDDFTAA 1146
Cdd:PRK14849 1615 KTGAYVDSWALYNWFDNSVSSDNRSADDYDSRGVTASVEGGYTFEAGtfsgsegtlNTWYVQPQAQITWMGVKDSDHTRK 1694
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 1147 NRARVSQSQGDDIQTRLGLHSEWRT--------AVHVIPTLDLNYYHDPHSTEIEEDGSTISDDAVKQRGEIKVGVTGNI 1218
Cdd:PRK14849 1695 DGTRIETEGDGNVQTRLGVKTYLNShhqrddgkQREFQPYIEANWINNSKVYAVKMNGQTVGREGARNLGEVRTGVEAKV 1774
|
890 900 910
....*....|....*....|....*....|..
gi 16130168 1219 SQRVSLRGSVAWQKGSDDFAQTAGFLSMTVKW 1250
Cdd:PRK14849 1775 NNNLSLWGNVGVQLGDKGYSDTQGMLGVKYSW 1806
|
|
| PRK15319 |
PRK15319 |
fibronectin-binding autotransporter adhesin ShdA; |
631-1250 |
1.41e-39 |
|
fibronectin-binding autotransporter adhesin ShdA;
Pssm-ID: 185219 [Multi-domain] Cd Length: 2039 Bit Score: 161.02 E-value: 1.41e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 631 ADGEVAVDAGVDTQWGALMADSSGQHQDEGSTLTKTGAGTLELTASGTTQSAVRVEEGTLkgdvadilpyasslWV-GDG 709
Cdd:PRK15319 1428 AHGTFTLGAGDSFEVTSVLGDKTGNGDWDGKSLTKLGAGKLTLSGANTYTGDTNVQEGTL--------------WLsGDG 1493
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 710 ATFVTGADQDIqsidaissgtidisdgtvlrltgqdtSVALNASLFNGDGTLVNATdgVTLTGELntnLETDSLTYLSNV 789
Cdd:PRK15319 1494 SIGEMGSQQAV--------------------------NVASGATFGGSNGTTVNGK--VTNEGTL---VFGDSEETGAIF 1542
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 790 TVNGNLTN----TSGAVSlqnGVAGDTLTVNGDYTG-GGTLLLDSELNGDDSVSDQLVMNGNTAGNTTVVVNSItGIGEP 864
Cdd:PRK15319 1543 TLNGDLINmgtmTSGSSS---STPGNTLYVDGNYTGnGGSLYLNTVLGDDDSATDKLVITGDASGTTDLYINGI-GDGAQ 1618
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 865 TSTGIKVVDFAADPTqfqnNAQFSLAGSgyVNMGAYDYTLV--EDNNDWYLRSQEVTPPSPP------------------ 924
Cdd:PRK15319 1619 TTNGIEVVDVGGVST----SDAFELKNE--VNAGLYTYRLYwnESDNDWYLASKAQSDDDDSggddtpsdggddggnvtp 1692
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 925 -----DPDPTPDPDPTPDPDPTPDPEPTPAYQPVLNAKVGGYLNNLRAANQAFMMERRDHAG-----GDGQTLNLRVIGG 994
Cdd:PRK15319 1693 pddggDGGNVTPPDDGGDGGDVTPPDHGGDVAPQYRADIGAYMGNQWMARNLQMQTLYDREGsqyrnADGSVWARFKAGK 1772
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 995 DYHYTAAGQLAQHEDTSTVQLSGDLFSgrWGTDGE-WMLGIVGGY----SDNQGDSRSNMTGTRADNQNHGYAVGLTSSW 1069
Cdd:PRK15319 1773 AESEAVSGNIDMDSNYSQFQLGGDILA--WGNGQQsVTVGVMASYinadTDSTGNRGADGSQFTSSGNVDGYNLGVYATW 1850
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 1070 FQHGNQKQGAWLDSWLQYAWFSNDVSEQEDGTDHYHSSGIIASLEAGYQW----LPGRGVVIEPQAQVIYQGVQQDDFTA 1145
Cdd:PRK15319 1851 FADAQTHSGAYVDSWYQYGFYNNSVESGDAGSESYDSTANAVSLETGYRYdialSNGNTVSLTPQAQVVWQNYSADSVKD 1930
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 1146 ANRARVSQSQGDDIQTRLGLHSEWR----TAVHVIPTLDLNYYHDPHSTEIEEDGSTISDDAVKQRGEIKVGVTGNISQR 1221
Cdd:PRK15319 1931 NYGTRIDGQDGDSWTTRLGLRVDGKlykgSRTVIQPFAEANWLHTSDDVSVSFDDATVKQDLPANRAELKVGLQADIDKQ 2010
|
650 660
....*....|....*....|....*....
gi 16130168 1222 VSLRGSVAWQKGSDDFAQTAGFLSMTVKW 1250
Cdd:PRK15319 2011 WSVRAQVAGQTGSNDFGDLNGSLNLRYNW 2039
|
|
| PL2_Passenger_AT |
cd01344 |
Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 2, of ... |
729-916 |
7.57e-34 |
|
Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 2, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of the nonprotease autotransporters, Ag43, AIDA-1 and IcsA, as well as, the less characterized ShdA, MisL, and BapA autotransporters.
Pssm-ID: 238654 [Multi-domain] Cd Length: 188 Bit Score: 128.96 E-value: 7.57e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 729 GTIDISDGTVL--RLTGQDTSVALNASLFnGDGTLVNATDG-VTLTGELNTNLETDSltylsnVTVNGNLTNtSGAVSLQ 805
Cdd:cd01344 1 GTITGNGGWKLggDLTLGGGALTLTTSLT-LTGTLLTGGAGtLTLDSTSTWNITGTS------TLNVGNLTN-AGTIDLG 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 806 NG-VAGDTLTVNGDYTG-GGTLLLDSELNGDDSVSDQLVMNGNTAGNTTVVVNSITGIGEPTSTGIKVVDFAAdptqFQN 883
Cdd:cd01344 73 NGsPAGGTLTITGNYTGnGGTLRLNTVLGDDDSPTDRLVIDGDASGTTRVAVNNAGGSGATTGNGIEVVEVGG----TSS 148
|
170 180 190
....*....|....*....|....*....|....*...
gi 16130168 884 NAQFSLAgsGYVNMGAYDYTLV-----EDNNDWYLRSQ 916
Cdd:cd01344 149 NGAFSLA--GRVVAGAYEYRLYrggvsGNDGNWYLRSE 184
|
|
| auto_AIDA-I |
NF033176 |
autotransporter adhesin AIDA-I; |
747-1233 |
5.94e-33 |
|
autotransporter adhesin AIDA-I;
Pssm-ID: 380183 [Multi-domain] Cd Length: 1287 Bit Score: 139.02 E-value: 5.94e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 747 SVALNASLFNGDGTLVNATDGVTLTGELNT-------------NLETDS-----LTYLSNVTVNGNLTNTSGAV-SLQNG 807
Cdd:NF033176 767 SAVVNADMAVSQNAYINISDQATINGSVNNkgsvvinnsiingNITNDAdlsfgTAKLLSATVNGSLVNNKNIIlNPTKE 846
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 808 VAGDTLTVNgDYTG--GGTLLLDSELNGDDSVSDQLVMNGNTAGNTTVVVNSITGIGEPTSTGIKVVDFAADptqfqNNA 885
Cdd:NF033176 847 SAGNTLTVS-NYTGtpGSVISLGGVLEGDNSLTDRLVVKGNTSGQSDIVYVNEGGSGGQTIEGINIISVEGN-----SDA 920
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 886 QFSLAGSgyVNMGAYDYTLVE------DNNDWYLRSQevtppsppdpdptpdpdptpdpdptPDPEPTPAYQPvlnaKVG 959
Cdd:NF033176 921 EFSLKNR--VVAGAYDYTLQKgnvsgtDKKGWYLTSH-------------------------LPTSDTRQYRP----ENG 969
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 960 GYLNNLRAANQAFMM---ERR------DHAGGDGQTLNLRVIGGdyhyTAAGQLAQHEDTSTV-----QLSGDLFSGRWG 1025
Cdd:NF033176 970 SYATNMALANSLFLMdlnERKqfsavnDNTQPESASVWMKITGG----RTSGKLSDGQNKTTTnqfinQLGGDIYKYHAE 1045
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 1026 TDGEWMLGIVGGYSDNQGDSRSNMTGTRADNQNHGYAVGLTSSWFQHGNQKQGAWLDSWLQYAWFSNDVSEQEDGTDHYH 1105
Cdd:NF033176 1046 KLGDFTLGIMGGYANAKGKTINHTSKKGARNTLDGYSAGLYGTWYQNGANATGLFAETWMQYNWFNASVKGDGLEEEKYN 1125
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 1106 SSGIIASLEAGYQ-----WLPGRGVV----IEPQAQVIYQGVQQDDFTAANRARVSQSQGDDIQTRLGLHSEWR------ 1170
Cdd:NF033176 1126 LNGLTASVGGGYNlnvhtWTSPEGIKgefwLQPHLQAVWMGVTPDTHQEDNGTVVQGTGKNNLQTKAGIRASWKvkssld 1205
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16130168 1171 --TAVHVIPTLDLNYYHDPHSTEIEEDGSTISDDAVKQRGEIKVGVTGNISQRVSLRGSVAWQKG 1233
Cdd:NF033176 1206 kdTGREFRPYIEANWIHNTHEFGVKMSGDNQLLSGSRNQGEIKTGIEGVITQNLSVNGGVAYQAG 1270
|
|
| PL_Passenger_AT |
cd00253 |
Pertactin-like passenger domains (virulence factors) of autotransporter proteins of the type V ... |
732-918 |
3.49e-29 |
|
Pertactin-like passenger domains (virulence factors) of autotransporter proteins of the type V secretion system. Autotransporters are proteins used by Gram-negative bacteria to transport proteins across their outer membranes. The C-terminal (beta) domain of autotransporters forms a pore in the outer membrane through which the N-terminal passenger domain is transported. Following transport, the passenger domain is generally cleaved by an outer membrane protease with the passenger domain either remaining in contact with the surface via a noncovalent interaction with the beta domain or cleaved to release a soluble protein. These proteins are highly diverse and perform a variety of functions that promote virulence, including catalyzing proteolysis, serving as an adhesin, mediating actin-promoted motility, or serving as a cytotoxin. Proteins in this family share similarity in the C-terminal region of the passenger domain as seen in the pertactin structure P.69, a Bordetella pertussis agglutinogen responsible for human pertussis. The P.69 protein consists of a 16-stranded parallel beta-helix with a V-shaped cross-section, and is one of the largest beta-helix known to date.
Pssm-ID: 238156 [Multi-domain] Cd Length: 186 Bit Score: 115.54 E-value: 3.49e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 732 DISDGTVLRLTGQDTSVALNASLFNGDGTLVNATDGVTLTGELNTNletDSLTYLSNVTVNGNLTNTSGAVSLQNG-VAG 810
Cdd:cd00253 2 TLSGNATINGGGDLTLGGGGALTLTGNSVWLGTLQAGGGTVSLNSN---SLWTLTGDSTVNGNLTNSGGTVDFGSAsGAF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 811 DTLTVNGDYTGG-GTLLLDSELNGDDSVSDQLVMNGNTAGNTTVVVNSITGIGEPTSTGIKVVDfaadpTQFQNNAQFSL 889
Cdd:cd00253 79 NTLTVNGNYLGGnGTFVLNTDLGGDNSPTDKLVVTGNASGTTNVAVVNAGGEGASTGDGIELVE-----VNGGSDAAFSL 153
|
170 180 190
....*....|....*....|....*....|...
gi 16130168 890 AgsGYVNMGAYDYTL----VEDNNDWYLRSQEV 918
Cdd:cd00253 154 A--GRVDAGAYEYTLykggVGNNGNWYLRSTLA 184
|
|
| Autotransporter |
pfam03797 |
Autotransporter beta-domain; Secretion of protein products occurs by a number of different ... |
989-1228 |
3.47e-23 |
|
Autotransporter beta-domain; Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C terminus of the proteins it occurs in. The N terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.
Pssm-ID: 461054 [Multi-domain] Cd Length: 255 Bit Score: 100.15 E-value: 3.47e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 989 LRVIGGDYHY-TAAGQLAQHEDTSTVQLSGDLFSGrwgtdGEWMLGIVGGYSDnqgdSRSNMTGTRADNQNHGYAVGLTS 1067
Cdd:pfam03797 3 ARGFGGRGKQdGDGGAAGYDADTGGLQVGADYRLG-----DNLRLGVAFGYSR----SDADVDGRGGSGDSDSYSLGLYG 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 1068 SWFQHGnqkqGAWLDSWLQYAWFSNDVS-------EQEDGTDHYHSSGIIASLEAGYQWLPGRGVVIEPQAQVIYQGVQQ 1140
Cdd:pfam03797 74 TYYGDG----GWYLDGGLGYGWHDNDTRrsvdlggFSETAKGDYDGNGFGASLEAGYRFALGGGWTLEPFAGLAYVRLRL 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 1141 DDFTAANRA---RVSQSQGDDIQTRLGLHSEWR---TAVHVIPTLDLNYYHDPHSTEIEEDGS-----------TISDDA 1203
Cdd:pfam03797 150 DGFTESGGAaalSVDSQSYDSLTGRLGLRLSYTfdlGGGTLTPYARLGWRHEFGDDDPVTTAAfaglsgagsftVAGADL 229
|
250 260
....*....|....*....|....*
gi 16130168 1204 VKQRGEIKVGVTGNISQRVSLRGSV 1228
Cdd:pfam03797 230 ARDSLELGAGLSAQLSDNLSLYANY 254
|
|
| Autotransporter |
smart00869 |
Autotransporter beta-domain; Secretion of protein products occurs by a number of different ... |
989-1239 |
4.58e-23 |
|
Autotransporter beta-domain; Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type IV pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different peptidase is used and in some cases no cleavage occurs.
Pssm-ID: 214872 [Multi-domain] Cd Length: 268 Bit Score: 100.34 E-value: 4.58e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 989 LRVIGGDYHYTAAGQLAQHE---DTSTVQLSGDLfsgRWGTDGEWMLGIVGGYSDNQGDSRSNMTGTRADNqnHGYAVGL 1065
Cdd:smart00869 1 GRGLGGFLRQDSSGSGGSAGfdyDSYGLQLGADY---RLSDNGNLSLGFAAGYGNSKVDFSGNKGSGKGDV--DSYGLGL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 1066 TSSWFQHgnqkQGAWLDSWLQYAWFSNDVS------EQEDGTDHYHSSGIIASLEAGYQWLPGRGVVIEPQAQVIYQGVQ 1139
Cdd:smart00869 76 YAGYSLG----NGLYLDAQLGYGRSDNDTKrkvtlgGAGRAKGSYDGTGYGASLEAGYRFYLGGGLTLTPFAGLAYSRVR 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 1140 QDDFT----AANRARVSQSQGDDIQTRLGLHSEWRTAVH----VIPTLDLNYYHD---------PHSTEIEEDGSTISDD 1202
Cdd:smart00869 152 QDGFTesggGAFGLSVDSQSLDSLSLPLGLRLEYRLALGdgatLTPYLRLAYVHDfyddnpvvtASLLGSGASFTTSGTD 231
|
250 260 270
....*....|....*....|....*....|....*..
gi 16130168 1203 AVKQRGEIKVGVTGNISQRVSLRGSVAWQKGSDDFAQ 1239
Cdd:smart00869 232 LDRNAAELGLGLSAKLSNGLSLSLNYDGEFGGSSRSH 268
|
|
| AC_1 |
pfam18883 |
Autochaperone Domain Type 1; This entry represents the autochaperone domain of type 1 (AC-1) ... |
787-904 |
2.43e-15 |
|
Autochaperone Domain Type 1; This entry represents the autochaperone domain of type 1 (AC-1) in the Type Va Secretion System (T5aSS). Autotransporters (ATs) belong to a family of modular proteins secreted by the Type V, subtype a, secretion system (T5aSS) and considered as an important source of virulence factors in lipopolysaccharidic diderm bacteria (archetypical Gram-negative bacteria). The AC of type 1 with beta-fold appears as a prevalent and conserved structural element exclusively associated to beta-helical AT passenger.
Pssm-ID: 465898 [Multi-domain] Cd Length: 114 Bit Score: 73.41 E-value: 2.43e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 787 SNVTvngNLTNTSGAVSLQ--NGVAGDTLTVNGDYTG-GGTLLLDSELNGDDSVSDQLVMNGNTA-GNTTVVVNSITGIG 862
Cdd:pfam18883 1 SNVT---NLTNDNSTINFTapSGASYKTLTVDGDYTGnDGTLALNTYLGGDGSPSDKLVIDGGTAsGTTNLRINNTGGPG 77
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 16130168 863 EPTST-GIKVVDfAADPTQFQNnaqFSLagSGYVNMGAYDYTL 904
Cdd:pfam18883 78 ALTTNdGILVVD-VGGTTSDGA---FRL--AGRAVAGPYEYLL 114
|
|
| PL1_Passenger_AT |
cd01343 |
Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 1, of ... |
700-913 |
2.81e-12 |
|
Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 1, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of Neisseria and Haemophilus IgA1 proteases, SPATEs (serine protease autotransporters secreted by Enterobacteriaceae), Bordetella pertacins, and nonprotease autotransporters, TibA and similar AIDA-like proteins.
Pssm-ID: 238653 [Multi-domain] Cd Length: 233 Bit Score: 67.77 E-value: 2.81e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 700 YASSLWVGDGATFVTGadqDIQSIDAISSGTIDISD--GTVLrLTGQDTSVALNASLFNGDGTLVNATDGVTLTGELNTN 777
Cdd:cd01343 26 YGSSVTLTNGAVLDAG---NANLSAAASYATLSGSNirGTVV-LGAGQPLQALAELLLGGNAAWTGAIQGLNATVSLNLN 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 778 letdSLTYLSNVTVNGNLTNTSGAVSLQNGVAGD--TLTVNgDYTGGGTLLLDSELNGDDSvsDQLVMNGNTAGNTTVVV 855
Cdd:cd01343 102 ----SVWTLTGDSNVNNLTLNGGTVDFNGPSAGKfnTLTVN-TLSGNGTFVMRTDLAGGQG--DKLVVTGSATGDFNLLV 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 856 NSITGigEPTS-TGIKVVDfaadpTQFQNNAQFSLAGsGYVNMGAYDYTLVED-NNDWYL 913
Cdd:cd01343 175 VNTGK--EPTSgLNLTLVS-----TPKGGDAEFTLAN-GTVDLGAYRYTLVKDgNGNWTL 226
|
|
| FhaB |
COG3210 |
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ... |
48-1068 |
2.23e-10 |
|
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442443 [Multi-domain] Cd Length: 1698 Bit Score: 65.56 E-value: 2.23e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 48 QSLSGITQDWSIADGQWLVFSDMTNNASGGAVFLQQGAEFSLLPENETGMTLFANNTVTGEYNNGGAIFAKENSTLNLTD 127
Cdd:COG3210 434 GITGNGTVTGGTIGGLTGSGTTNGAGLSGNTDVSGTGTVTNSAGNTTSATTLAGGGIGTVTTNATISNNAGGDANGIATG 513
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 128 VIFSGNVAGGYGGAIYSSGTNDTGAVDLRVTNAMFRNNIANDGKGGAIYTINNDVYLSDVIFDNNQAYTSTSYSDGDGGA 207
Cdd:COG3210 514 LTGITAGGGGGGNATSGGTGGDGTTLSGSGLTTTVSGGASGTTAASGSNTANTLGVLAATGGTSNATTAGNSTSATGGTG 593
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 208 IDVTDNNSDSKHPSGYTIVNNTAFTNNTAEGYGGAIYTNSVTAPYLIDISVDDSYSQNGGVLVDENNSAAGYGDGPSSAA 287
Cdd:COG3210 594 TNSGGTVLSIGTGSAGATGTITLGAGTSGAGANATGGGAGLTGSAVGAALSGTGSGTTGTASANGSNTTGVNTAGGTGGG 673
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 288 GGFMYLGLSEVTFDIADGKTLVIGNTENDGAVDSIAGTGlITKTGSGDLVLNADNNDFTGEMQIENGEVTLGRSNSLMNV 367
Cdd:COG3210 674 TTGTVTSGATGGTTGTTLNAATGGTLNNAGNTLTISTGS-ITVTGQIGALANANGDTVTFGNLGTGATLTLNAGVTITSG 752
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 368 GDTHCQDDPQDCYGLTIGSIDQYQNQAELNVGSTQQTFVHALTGFQNGTLNIDAGGNVTVNQGSFAGIIegagQLTIAQN 447
Cdd:COG3210 753 NAGTLSIGLTANTTASGTTLTLANANGNTSAGATLDNAGAEISIDITADGTITAAGTTAINVTGSGGTI----TINTATT 828
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 448 GSYVLAGAQSMALTGDIVVDDGAVLSLEGDAADLTALQDDPQSIVLNGGVLDLSDFSTWQSGTSYNDGLEVSGSSGTVIG 527
Cdd:COG3210 829 GLTGTGDTTSGAGGSNTTDTTTGTTSDGASGGGTAGANSGSLAATAASITVGSGGVATSTGTANAGTLTNLGTTTNAASG 908
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 528 SQDVVDLAGGDNLHIGGDGKDGVYVVVDASDGQVSLANNNSYLGTTQIASGTLMVSDNSQLGDTHYNRQVIFTDKQQESV 607
Cdd:COG3210 909 NGAVLATVTATGTGGGGLTGGNAAAGGTGAGNGTTALSGTQGNAGLSAASASDGAGDTGASSAAGSSAVGTSANSAGSTG 988
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 608 MEITSDVDTRSDAAGHGRDIEMRADGEVAVDAGVDTQWGALMADSSGQHQDEGSTLTKTGAGTLELTASGTTQSAVRVEE 687
Cdd:COG3210 989 GVIAATGILVAGNSGTTASTTGGSGAIVAGGNGVTGTTGTASATGTGTAATAGGQNGVGVNASGISGGNAAALTASGTAG 1068
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 688 GTLKGDVADILPYASSLWVGDGATFVTGADQDIQSIDAISSGTIDISDGTVLRLTGQDTSVALNASLFNGDGTLVNATDG 767
Cdd:COG3210 1069 TTGGTAASNGGGGTAQASGAGTTHTLGGITNGGATGTSGGTTTSTGGVTASKVGGTTTVGATGTSTASTEAAGAGTLTGL 1148
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 768 VTLTGELNTNLETDSLTYLSNVTVNGNLTNTSGAVSLQNGVAGDTLTVNGDYTGGGTLLLDSELNGDDSVSDQLVMNGNT 847
Cdd:COG3210 1149 VAVSAVAGGASSASAGDTTAVAAATTTTTGSAINGGADSAATEGTAGTDLKGGDSTGGSTTTIGTTNVTTTTTLTASDTG 1228
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 848 AGNTTVVVNSITGIGEPTSTGIKVVDFAADPTQFQNNAQFSLAGSGYVNMGAYDYTLVEDNNDWYLRSQEVTPPSPPDPD 927
Cdd:COG3210 1229 NTTATGGSSAGQTGSFVAAGSASGTGDATTGATAGAVSNGATSTVAGNAGATATGSTVDIGSTSATSAGGSLDTTGNTAG 1308
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 928 PTPDPDPTPDPDPTPDPEPTPAYQPVLNAKVGGYLNNLRAANQAFMMERRDHAGGDGQTLNLRVIGGDYHYTAAGQLAQH 1007
Cdd:COG3210 1309 ANGATVGTGIGGTTATGTAVAAVNSGGVNAGGGTINTTAANTGLNGGNGATDSAAGAGSGGAAGSLAATAGAGTVLTGAG 1388
|
970 980 990 1000 1010 1020
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16130168 1008 EDTSTVQLSGDLFSGRWGTDGEWMLGIVGGYSDNQGDSRSNMTGTRADNQNHGYAVGLTSS 1068
Cdd:COG3210 1389 NNTGAEGTNAGRDGGVTTSGTGVGNNGGVSGTTVAGTTGSSATTGTGGTGNTTGTSVAGAG 1449
|
|
| FhaB |
COG3210 |
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ... |
68-1068 |
5.61e-09 |
|
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442443 [Multi-domain] Cd Length: 1698 Bit Score: 60.94 E-value: 5.61e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 68 SDMTNNASGGAVFLQQGAEFSLLPENETGMTLFANNTVTGEYNNGGAIFAKENSTLNLTDVIFSGNVAGGYGGAIYSSGT 147
Cdd:COG3210 209 LANAGGGTAGGVASANSTLTGGVVAAGTGAGVISTGGTDISSLSVAAGAGTGGAGGTGNAGNTTIGTTVTGTNATGSNTA 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 148 NDTGAVDLRVTNAMFRNNIANDGKGGAIYTINNDVYLSDVIFDNNQAYTSTSYSDGDGGAIDVTDNNSDSKHPSGYTIVN 227
Cdd:COG3210 289 GASSGDTTTNGTSSVTGAGGTGVLGGGTAAGITTTNTVGGNGDGNNTTANSGAGLVSGGTGGNNGTTGTGAGSGLTGTGN 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 228 NTAFTNNTAEGYGGAIYTNSVTAPYLIDISVDDSYSQNGGVLVDENNSAAGYGDGPSSAAGGFMYLGLSEVTFDIADGKT 307
Cdd:COG3210 369 GGGLTTAGAGTVASTVGTATASTGNASSTTVLGSGSLATGNTGTTIAGNGGSANAGGFTTTGGVLGITGNGTVTGGTIGG 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 308 LVIGNTENDGAVDSIAGTGLITKTGSGDLVLNADNNDFTGEMQIENGEVTLGRSNSLMNVGDTHCQDDPQdcyGLTIGSI 387
Cdd:COG3210 449 LTGSGTTNGAGLSGNTDVSGTGTVTNSAGNTTSATTLAGGGIGTVTTNATISNNAGGDANGIATGLTGIT---AGGGGGG 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 388 DQYQNQAELNVGSTQQTFVHALTGFQNGTLNIDAGGNVTVNQGSFAGIIEGAGQLTIAQNGSYVLAGAQSMALTGDIVVD 467
Cdd:COG3210 526 NATSGGTGGDGTTLSGSGLTTTVSGGASGTTAASGSNTANTLGVLAATGGTSNATTAGNSTSATGGTGTNSGGTVLSIGT 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 468 DGAVLSLEGDAADLTALQDDPQSIVLNGGVLDLSDFSTWQSGTSYNDGLEVSGSSGTVIGSQDVVDLAGGDNLHIGGDGK 547
Cdd:COG3210 606 GSAGATGTITLGAGTSGAGANATGGGAGLTGSAVGAALSGTGSGTTGTASANGSNTTGVNTAGGTGGGTTGTVTSGATGG 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 548 DGVYVVVDASDGQVSLANNNSYLGTTQIASGTLMVSDNSQLGDThynrqVIFTDKQQESVMEITSDVDTRSDAAGHGRDI 627
Cdd:COG3210 686 TTGTTLNAATGGTLNNAGNTLTISTGSITVTGQIGALANANGDT-----VTFGNLGTGATLTLNAGVTITSGNAGTLSIG 760
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 628 emRADGEVAVDAGVDTQWGALMADSSGQHQDEGSTLTKTGAGTLELTASGTTQSAVRVEEGTLkgdvadILPYASSLWVG 707
Cdd:COG3210 761 --LTANTTASGTTLTLANANGNTSAGATLDNAGAEISIDITADGTITAAGTTAINVTGSGGTI------TINTATTGLTG 832
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 708 DGATFVTGADQDIQSIDAISSGTIDISDGTVLRLTGQDTSVALNASLFNGDGTLVNATDGVTLTGELNTNLETDSLTYLS 787
Cdd:COG3210 833 TGDTTSGAGGSNTTDTTTGTTSDGASGGGTAGANSGSLAATAASITVGSGGVATSTGTANAGTLTNLGTTTNAASGNGAV 912
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 788 NVTVNGNLTNTSGAVSLQNGVAGDTLTVNGDYTGGGTLLLDSELNGDDSVSDQLVMNGNTAGNTTVVVNSITGIGEPTST 867
Cdd:COG3210 913 LATVTATGTGGGGLTGGNAAAGGTGAGNGTTALSGTQGNAGLSAASASDGAGDTGASSAAGSSAVGTSANSAGSTGGVIA 992
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 868 GIKVVDFAADPTQFQNNAQFSLAGSGYVNMGAYDYTLVEDNNDWYLRSQEVTPPSPPDPDPTPDPDPTPDPDPTPDPEPT 947
Cdd:COG3210 993 ATGILVAGNSGTTASTTGGSGAIVAGGNGVTGTTGTASATGTGTAATAGGQNGVGVNASGISGGNAAALTASGTAGTTGG 1072
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 948 PAYQPVLNAKVGGYLNNLRAANQAFMMERRDHAGGDGQTLNLRVIGGDYHYTAAGQLAQHEDTSTVQLSGDLFSGRWGTD 1027
Cdd:COG3210 1073 TAASNGGGGTAQASGAGTTHTLGGITNGGATGTSGGTTTSTGGVTASKVGGTTTVGATGTSTASTEAAGAGTLTGLVAVS 1152
|
970 980 990 1000
....*....|....*....|....*....|....*....|.
gi 16130168 1028 GEWMLGIVGGYSDNQGDSRSNMTGTRADNQNHGYAVGLTSS 1068
Cdd:COG3210 1153 AVAGGASSASAGDTTAVAAATTTTTGSAINGGADSAATEGT 1193
|
|
| AidA |
COG3468 |
Autotransporter adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular ... |
120-545 |
2.73e-06 |
|
Autotransporter adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442691 [Multi-domain] Cd Length: 846 Bit Score: 51.87 E-value: 2.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 120 NSTLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAVDLRVTNAMFRNNIANDGKGGAIYTINNDVYLSDVIFDNNQAYTSTS 199
Cdd:COG3468 2 ASGGGGGATGLGGGGTGGGGGLGGTGGGNAGLGIGNGGGGGAASGSGAGGVAGNGGGGGGGAGGGGGGAGSGGGLAGAGS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 200 YSDGDGGAIDVTDNNSDSKHPSGYTIVNNTAFTNNTAEGYGGAIYTNSVTAPYLIDISVDDSYSQNGGVLVDENNSAAGY 279
Cdd:COG3468 82 GGTGGNSTGGGGGNSGTGGTGGGGGGGGSGNGGGGGGGGGGGGTGGGGGGGTGSAGGGGGGGGGGTGVGGTGAAAAGGGT 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 280 GDGPSSAAGGFMYLGLSEVTFDIADGKTLVIGNTENDGAVDSIAGTGLITKTGSGDLVLNADNNDFTGEMQIENGEVTLG 359
Cdd:COG3468 162 GSGGGGSGGGGGAGGGGGGGAGGSGGAGSTGSGAGGGGGGSGGGGGAAGTGGGGGGGGGAGGATGGAGSGGNTGGGVGGG 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 360 RSNSLMNVGDTHCQDDPQDCYGLTIGSIDQYQNQAELNVGSTQQTFVHALTGFQNGTLNIDAGGNVTVNQGSFAGIIEGA 439
Cdd:COG3468 242 GGSAGGTGGGGLTGGGAAGTGGGGGGTGTGSGGGGGGGANGGGSGGGGGASGTGGGGTASTGGGGGGGGGNGGGGGGGSN 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 440 GQLTIAQNGSYVLAGAQSMALTGDIVVDDGAVLSLEGDAADLTALQDDP-QSIVLNGGVLDLSDFSTWQSGTSYNDGLEV 518
Cdd:COG3468 322 AGGGSGGGGGGGGGGGGGGTTLNGAGSAGGGTGAALAGTGGSGSGGGGGgGSGGGGGAGGGGANTGSDGVGTGLTTGGTG 401
|
410 420
....*....|....*....|....*..
gi 16130168 519 SGSSGTVIGSQDVVDLAGGDNLHIGGD 545
Cdd:COG3468 402 NNGGGGVGGGGGGGLTLTGGTLTVNGN 428
|
|
| PRK15319 |
PRK15319 |
fibronectin-binding autotransporter adhesin ShdA; |
299-798 |
1.40e-04 |
|
fibronectin-binding autotransporter adhesin ShdA;
Pssm-ID: 185219 [Multi-domain] Cd Length: 2039 Bit Score: 46.62 E-value: 1.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 299 TFDIADGKTLVIGNTENDGAVDSIAGTGLITKTGSGDLVLNADNNDFtGEMQIENGeVTLGRSNSLMNVGDTHCQDDPQd 378
Cdd:PRK15319 596 TFTVDAGSTFTVTSELDETTATSNWNGSKLTKQGDGTLILSNTGNDY-GDTEIDGG-ILAAKDAAALGTGDVTIAESAT- 672
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 379 cYGLTIGSID-QYQNQAELNVGSTQQTFVHALTGFQNGTL-----------------NIDAGGNVTVNQGSFAGIIEGAG 440
Cdd:PRK15319 673 -LALSQGTLDnNVTGEGQIVKSGSDELIVTGDNNYSGGTTisggtltadhadslgsgDVDNSGVLKVGEGELENILSGSG 751
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 441 QLTIAQNGSYVLAGAQSMA----LTGDIVVDDGAVLSLEGD----------AADLTALQDDPQSIVLNG-GVLDLSDFST 505
Cdd:PRK15319 752 SLVKTGTGELTLSGDNTYSggttITGGTLTADHADSLGSGDidnsgvlkvgEGDLENTLSGSGSLVKTGtGELTLSGGND 831
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 506 WQSGTSYNDGlEVSGSSGTVIGSQDVvdlAGGDNLHIG-GDGKDGVY---VVVDASDGQVSLANNNSYLGTTQIASGTLM 581
Cdd:PRK15319 832 YSGGTTIIGG-TLTADHADSLGSGDI---DNSGVLQVGeGELKNTLFgsgSLVKTGTGELTLNGDNDYSGGTTIDDGVLI 907
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 582 VSDNSQLGDTHYNRQVIFTDKQQESVMEITSDVDTRSDAAGhgrdiEMRADGEVAVDAGVDTQWGALMADSS---GQHQD 658
Cdd:PRK15319 908 ADHADSLGTGAVANSGVLQVGEGELKNTLSGSGSLVKTGTG-----ELTLSGDNSYSGGTTIIGGTLIADHAdslGTGAV 982
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 659 EGSTLTKTGAGTLELTASGTTqSAVRVEEG--TLKGDVAdilpYASSLWVGDGaTFVTGADQDIQSIDAISSGTIDISDG 736
Cdd:PRK15319 983 ANSGVLQVGEGELENTLSGSG-SLVKTGTGelTLGGDNS----YSGDTTIADG-TLIAANVNALGSGNIDNSGTLMLDAN 1056
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16130168 737 TVLRLTGQDTSVALNASLFNG---DGTLVNATDGVTLTGELNTNLEtDSLTYLSNVTVNGNLTNT 798
Cdd:PRK15319 1057 GAFELANITTHSGATTALAAGstlDAGQLTQEDGSTLSIDLGAATD-DAVITADSVTLGGTLNVT 1120
|
|
| Pertactin |
pfam03212 |
Pertactin; |
812-913 |
1.94e-03 |
|
Pertactin;
Pssm-ID: 460848 [Multi-domain] Cd Length: 121 Bit Score: 39.30 E-value: 1.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130168 812 TLTVNGdYTGGGTLLLDSELngDDSVSDQLVMNGNTAGNTTVVVNSiTGiGEPTSTGiKVVDFAADPtqfQNNAQFSLAG 891
Cdd:pfam03212 25 TLTTQT-LSGSGTFVMNADV--ASGTGDQLVVSGNASGQHVLLVRN-TG-SEPASGN-TKLTLVETG---GGDAAFTLGN 95
|
90 100
....*....|....*....|....
gi 16130168 892 SG-YVNMGAYDYTLVEDNN-DWYL 913
Cdd:pfam03212 96 KGgKVDAGTYRYRLTADGNgNWSL 119
|
|
| PATR |
pfam12951 |
Passenger-associated-transport-repeat; This Autotransporter-associated beta strand repeat ... |
663-690 |
7.32e-03 |
|
Passenger-associated-transport-repeat; This Autotransporter-associated beta strand repeat model represents a core 32-residue region of a class of bacterial protein repeat found in one to 30 copies per protein. Most proteins with a copy of this repeat have domains associated with membrane autotransporters (pfam03797). The repeats occur with a periodicity of 60 to 100 residues. A pattern of sequence conservation is that every second residue is well-conserved across most of the domain. These repeats as likely to have a beta-helical structure. This repeat plays a role in the efficient transport of autotransporter virulence factors to the bacterial surface during growth and infection. The repeat is always associated with the passenger domain of the autotransporter. For these reasons it has been coined the Passenger-associated Transport Repeat (PATR). The mechanism by which the PATR motif promotes transport is uncertain but it is likely that the conserved glycines (see HMM Logo) are required for flexibility of folding and that this folding drives secretion. Autotransporters that contain PATR(s) associate with distinct virulence traits such as subtilisin (S8) type protease domains and polymorphic outer-membrane protein repeats, whilst SPATE (S6) type protease and lipase-like autotransporters do not tend to contain PATR motifs.
Pssm-ID: 463760 [Multi-domain] Cd Length: 28 Bit Score: 35.01 E-value: 7.32e-03
10 20
....*....|....*....|....*...
gi 16130168 663 LTKTGAGTLELTASGTTQSAVRVEEGTL 690
Cdd:pfam12951 1 LTKTGAGTLTLTGANTYTGGTTVNAGTL 28
|
|
| |
