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Conserved domains on  [gi|16130269|ref|NP_416837|]
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putative fimbrial protein YfcQ [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

fimbrial protein( domain architecture ID 646)

fimbrial protein similar to the type-1 fimbrial major subunit FimA, which is transported to the outer membrane by the lipoprotein sorting system, and a mature or processed FimA protein on the outer membrane is autopolymerized to form Fim fimbriae

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Fimbrial super family cl01416
Fimbrial protein;
1-162 9.79e-49

Fimbrial protein;


The actual alignment was detected with superfamily member PRK15287:

Pssm-ID: 445401 [Multi-domain]  Cd Length: 158  Bit Score: 154.48  E-value: 9.79e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130269    1 MRKTFLTLLcVSSAIAHAADEDITFHGTLLSPPTCSISGGKTIEVEFRDLIIDDINGNYGRKEVPYELTCDSTTRHPDWE 80
Cdd:PRK15287   1 MKKMALTML-MGGSLAAQAADNLKFHGTLISPPNCTINNDQTIDVKFGNLLINKIDGTRYAQNVPYEITCDSTVRDETMA 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130269   81 MTLTWTGTQTSFNDAAIETDVPGFGIELQHDGQRFKLNTPLAINATDFtqkPKLEAVPVKASDAVLSDTNFSAYATLRVD 160
Cdd:PRK15287  80 MTLTLSGSVSDFNPAAVNTSVAGLGIELRQNDQPFTLGSTITVNEQSI---PVLKAIPVKKSGASLKEGGFDATATLQVD 156


                 ..
gi 16130269  161 YQ 162
Cdd:PRK15287 157 YQ 158
 
Name Accession Description Interval E-value
PRK15287 PRK15287
fimbrial minor subunit StfF;
1-162 9.79e-49

fimbrial minor subunit StfF;


Pssm-ID: 185187 [Multi-domain]  Cd Length: 158  Bit Score: 154.48  E-value: 9.79e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130269    1 MRKTFLTLLcVSSAIAHAADEDITFHGTLLSPPTCSISGGKTIEVEFRDLIIDDINGNYGRKEVPYELTCDSTTRHPDWE 80
Cdd:PRK15287   1 MKKMALTML-MGGSLAAQAADNLKFHGTLISPPNCTINNDQTIDVKFGNLLINKIDGTRYAQNVPYEITCDSTVRDETMA 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130269   81 MTLTWTGTQTSFNDAAIETDVPGFGIELQHDGQRFKLNTPLAINATDFtqkPKLEAVPVKASDAVLSDTNFSAYATLRVD 160
Cdd:PRK15287  80 MTLTLSGSVSDFNPAAVNTSVAGLGIELRQNDQPFTLGSTITVNEQSI---PVLKAIPVKKSGASLKEGGFDATATLQVD 156


                 ..
gi 16130269  161 YQ 162
Cdd:PRK15287 157 YQ 158
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
1-162 1.13e-20

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 83.16  E-value: 1.13e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130269   1 MRKTFLTL---LCVSSAIAHAADEDITFHGTLLSpPTCSIS-GGKTIEVEFRDLIIDDINGN---YGRKEVPYELT-CDS 72
Cdd:COG3539   1 MKKLLLALllaLALSAAAAAAADGTVNFTGTVVA-PTCTINtGSKDQTVDLGTVSTSDLNGVgstSGPKPFSIKLTnCDA 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130269  73 TTRHpdwEMTLTWTGTQTSFNDAAI----ETDVPGFGIELQH-DGQRFKLNTP---LAINATDfTQKPKLEAVPVKASDA 144
Cdd:COG3539  80 GTSN---SVKVTFTGTADSANPGLLantgSGGASGVGIQLLDsDGTPIPLGTPssaVTLTSNG-SATLPFYARYVATGAT 155

                       170       180
                ....*....|....*....|
gi 16130269 145 VlsdT--NFSAYATLRVDYQ 162
Cdd:COG3539 156 V---TagSFNATATFTIDYQ 172
Fimbrial pfam00419
Fimbrial protein;
23-162 2.94e-08

Fimbrial protein;


Pssm-ID: 425671  Cd Length: 152  Bit Score: 50.13  E-value: 2.94e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130269    23 ITFHGTLLS-PPTCSISGGKTIEVEFRDLIIDDI-NGNYGRKEVPYELT--CDSTTRHPDWEMTLtwTGTQTSFNDAAIE 98
Cdd:pfam00419   1 INFTGTVTRvPATCKITAGTPIEVDFGQIPVNELnAGGEGSRQKPFSITleCSSGSSAVKVTVGL--FGTADASSPNLLL 78

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16130269    99 T-----DVPGFGIELQHDGqrfklNTPLAINATDFTQKP----------KLEAVPVKASDAVLSDTNFSAYATLRVDYQ 162
Cdd:pfam00419  79 TgngagAATGVGIRLYDAN-----GGALPPNNGTSSIPVsataavatgiTFTASLVATTGGTPTAGDFNATATIVVDYQ 152
 
Name Accession Description Interval E-value
PRK15287 PRK15287
fimbrial minor subunit StfF;
1-162 9.79e-49

fimbrial minor subunit StfF;


Pssm-ID: 185187 [Multi-domain]  Cd Length: 158  Bit Score: 154.48  E-value: 9.79e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130269    1 MRKTFLTLLcVSSAIAHAADEDITFHGTLLSPPTCSISGGKTIEVEFRDLIIDDINGNYGRKEVPYELTCDSTTRHPDWE 80
Cdd:PRK15287   1 MKKMALTML-MGGSLAAQAADNLKFHGTLISPPNCTINNDQTIDVKFGNLLINKIDGTRYAQNVPYEITCDSTVRDETMA 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130269   81 MTLTWTGTQTSFNDAAIETDVPGFGIELQHDGQRFKLNTPLAINATDFtqkPKLEAVPVKASDAVLSDTNFSAYATLRVD 160
Cdd:PRK15287  80 MTLTLSGSVSDFNPAAVNTSVAGLGIELRQNDQPFTLGSTITVNEQSI---PVLKAIPVKKSGASLKEGGFDATATLQVD 156


                 ..
gi 16130269  161 YQ 162
Cdd:PRK15287 157 YQ 158
PRK15276 PRK15276
putative fimbrial subunit SteE; Provisional
 6-162 4.44e-37

putative fimbrial subunit SteE; Provisional


Pssm-ID: 185179  Cd Length: 153  Bit Score: 124.83  E-value: 4.44e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130269    6 LTLLCVSSAIAhaadEDITFHGTLLSPPTCSISGGKTIEVEFRDLIIDDINGNYGRKEVPYELTCDSTTRHPDWEMTLTW 85
Cdd:PRK15276   4 LTLLITQFACA----DNLTFHGKLINPPACTINNGETLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSY 79

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16130269   86 TGTQTSFNDAAIETDVPGFGIELQHDGQRFKLNTPLAINATDFtqkPKLEAVPVKASDAVLSDTNFSAYATLRVDYQ 162
Cdd:PRK15276  80 LGTATPYSAKALTTNVPELGIELQQNGTVFPPGTSLTINESSL---PTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ 153
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
1-162 1.13e-20

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 83.16  E-value: 1.13e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130269   1 MRKTFLTL---LCVSSAIAHAADEDITFHGTLLSpPTCSIS-GGKTIEVEFRDLIIDDINGN---YGRKEVPYELT-CDS 72
Cdd:COG3539   1 MKKLLLALllaLALSAAAAAAADGTVNFTGTVVA-PTCTINtGSKDQTVDLGTVSTSDLNGVgstSGPKPFSIKLTnCDA 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130269  73 TTRHpdwEMTLTWTGTQTSFNDAAI----ETDVPGFGIELQH-DGQRFKLNTP---LAINATDfTQKPKLEAVPVKASDA 144
Cdd:COG3539  80 GTSN---SVKVTFTGTADSANPGLLantgSGGASGVGIQLLDsDGTPIPLGTPssaVTLTSNG-SATLPFYARYVATGAT 155

                       170       180
                ....*....|....*....|
gi 16130269 145 VlsdT--NFSAYATLRVDYQ 162
Cdd:COG3539 156 V---TagSFNATATFTIDYQ 172
PRK15275 PRK15275
putative fimbrial protein SteD; Provisional
 2-162 1.79e-16

putative fimbrial protein SteD; Provisional


Pssm-ID: 185178  Cd Length: 166  Bit Score: 72.08  E-value: 1.79e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130269    2 RKTFLTLLC----VSSAIAHAADEDITFHGTLLSPPTCSISGGktiEVEFRDLIIDDINGNYGRKEVPYELTCDSttRHP 77
Cdd:PRK15275   4 RWKILVLLCggfvTGTEAAGTKTVQLELHLVVTQPPPCTVGGA---SVEFGDVLTTKVGDASQTKPVGYSLNCDG--RAS 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130269   78 DWeMTLTWTGTQTSFN-DAAIETDVPGFGIELQHDGQrfKLNTPLAI-NATDFT----QKPKLEAVPVKASDAVLSDTNF 151
Cdd:PRK15275  79 DY-LKLQIQGTTTTISgEQVLQTSVQGLGIRIQQAGN--KQLVPVGItDWLNFTlsgsNGPELEAVPVKEPTTQLAGGDF 155

                        170
                 ....*....|.
gi 16130269  152 SAYATLRVDYQ 162
Cdd:PRK15275 156 NASATLVVDYQ 166
PRK15286 PRK15286
putative minor fimbrial subunit StfE; Provisional
 31-162 9.80e-14

putative minor fimbrial subunit StfE; Provisional


Pssm-ID: 185186  Cd Length: 170  Bit Score: 65.15  E-value: 9.80e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130269   31 SPPTCSISGGktiEVEFRDLIIDDINGNYGRKEVPYELTCDSttRHPDWeMTLTWTGTQTSFN-DAAIETDVPGFGIELQ 109
Cdd:PRK15286  41 AAPPCTVTGG---EVEFGNVLTTKVDGVNYRQAVGYRLSCNG--RVSDY-LKLQIQGNAVTINgESVLQTDVDGLGIRLQ 114

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 16130269  110 H--DGqrfKLNTPLAINATDFTQK----PKLEAVPVKASDAVLSDTNFSAYATLRVDYQ 162
Cdd:PRK15286 115 TatDG---ALISPGNTQWLSFQYSggsgPAIEAIPVKNNGVTLTGGAFNAGATLVVDYQ 170
Fimbrial pfam00419
Fimbrial protein;
23-162 2.94e-08

Fimbrial protein;


Pssm-ID: 425671  Cd Length: 152  Bit Score: 50.13  E-value: 2.94e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130269    23 ITFHGTLLS-PPTCSISGGKTIEVEFRDLIIDDI-NGNYGRKEVPYELT--CDSTTRHPDWEMTLtwTGTQTSFNDAAIE 98
Cdd:pfam00419   1 INFTGTVTRvPATCKITAGTPIEVDFGQIPVNELnAGGEGSRQKPFSITleCSSGSSAVKVTVGL--FGTADASSPNLLL 78

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16130269    99 T-----DVPGFGIELQHDGqrfklNTPLAINATDFTQKP----------KLEAVPVKASDAVLSDTNFSAYATLRVDYQ 162
Cdd:pfam00419  79 TgngagAATGVGIRLYDAN-----GGALPPNNGTSSIPVsataavatgiTFTASLVATTGGTPTAGDFNATATIVVDYQ 152
PRK15189 PRK15189
fimbrial protein BcfD; Provisional
 23-161 1.53e-03

fimbrial protein BcfD; Provisional


Pssm-ID: 185111 [Multi-domain]  Cd Length: 335  Bit Score: 37.79  E-value: 1.53e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130269   23 ITFHGTLLSPPTCSISGGKTIEVEFRDLiiddINGNY--------GRKEVPYELTCDSTTRHPDWEMTLTWTGTQTSFND 94
Cdd:PRK15189 187 ILYSGTVTVPQSCEINAGQTILVNFGAL----YSGNFnhagqkpeGVRAKKFSVPVKCSGLDSQVNLTMRLIATPDSHVP 262

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16130269   95 AAIETDVPGFGIELQHD-GQRFKLN--TPLAINATDFTQKPK--LEAVPVKASDAVLSDTNFSAYATLRVDY 161
Cdd:PRK15189 263 QAIASDNADVGVVVETDeGNALIPNdvQSVAPFITDSAGRANitLQAYPVSTTGETPAEGAFTALASLRVDF 334
PRK15297 PRK15297
fimbrial protein;
23-159 3.21e-03

fimbrial protein;


Pssm-ID: 185197 [Multi-domain]  Cd Length: 359  Bit Score: 37.02  E-value: 3.21e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130269   23 ITFHGTLLSPPTCSISGGKTIEVEFRDLIIDDINgNYGRK------EVPYELTCDSTTRHPDWEMTLtwTGTQTSFNDAA 96
Cdd:PRK15297 213 VTMSGTITVPQSCSINAGQVIEVRLPDIEGKDIR-HLGDSpqnshvTTQVNFTCSNVADGTNLSMSL--NGATDPHNPDY 289

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16130269   97 IETDVPGFGIELQHDGQRFKL---NTPLAI-NATDFTQKPKLEAVPVKASDAVLSDTNFSAYATLRV 159
Cdd:PRK15297 290 LKTDNENLGIRISDKYDNTIVpggSAELPIeDYTDGKGSTEFTAAPVNTTGHVPHTGEYQATATLEI 356
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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