NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|16130271|ref|NP_416839|]
View 

putative fimbrial chaperone YfcS [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK15285 super family cl33121
fimbrial chaperone StfD;
30-249 3.89e-107

fimbrial chaperone StfD;


The actual alignment was detected with superfamily member PRK15285:

Pssm-ID: 185185 [Multi-domain]  Cd Length: 250  Bit Score: 309.79  E-value: 3.89e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271   30 VTPDRTRLIFNESDKSISVTLRNNDPKLPYLAQSWIEDEKGNKITSPLTVLPPVQRIDSMMNGQVKVQGMPDINKLPADR 109
Cdd:PRK15285  27 IAPDRTRLVFRGEDKSISVDLKNANSKLPYLAQSWVEDEKGVKITSPLIVVPPVQRIEPSAIGQVKIQGMPALASLPQDR 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271  110 ESMFYFNVREIPPKSNKPNTLQIALQTRIKLFWRPKALEKVSMKSPWQHKVTLTRSGQAFTVNNPTPYYVIISNASAQKN 189
Cdd:PRK15285 107 ETLFYYNVREIPPQSDKPNTLQIALQTRIKVFYRPQALSKIDMQHPWQYKITLQRQGNGYQVSNPTGYYVVLSNASNRMD 186

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16130271  190 GNPAAGFSPLVIEPKTTVPLN---VKMDSVPVLTYVNDFGARMPLFFQCNGNSCQVDEEQSRK 249
Cdd:PRK15285 187 GTPARGFSPLVIAPKSNVTLGgdaSELGHSPVLTYVNDYGARLPLIFNCTDNSCAVDEAKSRK 249
 
Name Accession Description Interval E-value
PRK15285 PRK15285
fimbrial chaperone StfD;
30-249 3.89e-107

fimbrial chaperone StfD;


Pssm-ID: 185185 [Multi-domain]  Cd Length: 250  Bit Score: 309.79  E-value: 3.89e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271   30 VTPDRTRLIFNESDKSISVTLRNNDPKLPYLAQSWIEDEKGNKITSPLTVLPPVQRIDSMMNGQVKVQGMPDINKLPADR 109
Cdd:PRK15285  27 IAPDRTRLVFRGEDKSISVDLKNANSKLPYLAQSWVEDEKGVKITSPLIVVPPVQRIEPSAIGQVKIQGMPALASLPQDR 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271  110 ESMFYFNVREIPPKSNKPNTLQIALQTRIKLFWRPKALEKVSMKSPWQHKVTLTRSGQAFTVNNPTPYYVIISNASAQKN 189
Cdd:PRK15285 107 ETLFYYNVREIPPQSDKPNTLQIALQTRIKVFYRPQALSKIDMQHPWQYKITLQRQGNGYQVSNPTGYYVVLSNASNRMD 186

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16130271  190 GNPAAGFSPLVIEPKTTVPLN---VKMDSVPVLTYVNDFGARMPLFFQCNGNSCQVDEEQSRK 249
Cdd:PRK15285 187 GTPARGFSPLVIAPKSNVTLGgdaSELGHSPVLTYVNDYGARLPLIFNCTDNSCAVDEAKSRK 249
FimC COG3121
P pilus assembly protein, chaperone PapD [Extracellular structures];
30-232 2.84e-61

P pilus assembly protein, chaperone PapD [Extracellular structures];


Pssm-ID: 442355 [Multi-domain]  Cd Length: 237  Bit Score: 192.51  E-value: 2.84e-61
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271  30 VTPDRTRLIFNESDKSISVTLRNNDPKlPYLAQSWIEDEKGN----KITSPLTVLPPVQRIDSMMNGQVKVQGMPdiNKL 105
Cdd:COG3121  25 ISISPTRVIYPAGDKEASLTLTNTGDT-PYLVQSWVDDWDQDagpdKATAPFVVTPPLFRLEPGKSQTVRIIRTG--PPL 101

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271 106 PADRESMFYFNVREIPPK---SNKPNTLQIALQTRIKLFWRPKALEKVSMKspWQHKVTLTRSGQAFTVNNPTPYYVIIS 182
Cdd:COG3121 102 PQDRESLFRLNVDEIPPKdasEEGKNTLQIALRTRIKLFYRPAGLKGSPED--AAEKLTWSLVGNGLTVTNPGPYYVTLS 179

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 16130271 183 NASAQKNGNPAAGFsPLVIEPKTTVPLNVKMDSVP------VLTYVNDFGARMPLF 232
Cdd:COG3121 180 DLSLGAGGKKLKKG-LGMVLPGSTRRWPLPAGASLaaggkvTWATINDYGGAVPLE 234
PapD_N pfam00345
Pili and flagellar-assembly chaperone, PapD N-terminal domain; C2 domain-like beta-sandwich ...
 30-147 7.45e-43

Pili and flagellar-assembly chaperone, PapD N-terminal domain; C2 domain-like beta-sandwich fold. This domain is the n-terminal part of the PapD chaperone protein for pilus and flagellar assembly.


Pssm-ID: 425623  Cd Length: 123  Bit Score: 141.57  E-value: 7.45e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271    30 VTPDRTRLIFNESDKSISVTLRNNDpKLPYLAQSWIEDEKGN----KITSPLTVLPPVQRIDSMMNGQVKVQGMPDinKL 105
Cdd:pfam00345   1 VVLGGTRVIYPAGEKEASVTVSNTG-DNPYLVQSWVDDGNEEgtdeKAKAPFIVTPPLFRLEPGQEQVLRIYTTGP--PL 77

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 16130271   106 PADRESMFYFNVREIPPKSNKP---NTLQIALQTRIKLFWRPKAL 147
Cdd:pfam00345  78 PTDRESLFWLNVLEIPPKDKPKggqNGLQLALRSRIKLFYRPAGL 122
 
Name Accession Description Interval E-value
PRK15285 PRK15285
fimbrial chaperone StfD;
30-249 3.89e-107

fimbrial chaperone StfD;


Pssm-ID: 185185 [Multi-domain]  Cd Length: 250  Bit Score: 309.79  E-value: 3.89e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271   30 VTPDRTRLIFNESDKSISVTLRNNDPKLPYLAQSWIEDEKGNKITSPLTVLPPVQRIDSMMNGQVKVQGMPDINKLPADR 109
Cdd:PRK15285  27 IAPDRTRLVFRGEDKSISVDLKNANSKLPYLAQSWVEDEKGVKITSPLIVVPPVQRIEPSAIGQVKIQGMPALASLPQDR 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271  110 ESMFYFNVREIPPKSNKPNTLQIALQTRIKLFWRPKALEKVSMKSPWQHKVTLTRSGQAFTVNNPTPYYVIISNASAQKN 189
Cdd:PRK15285 107 ETLFYYNVREIPPQSDKPNTLQIALQTRIKVFYRPQALSKIDMQHPWQYKITLQRQGNGYQVSNPTGYYVVLSNASNRMD 186

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16130271  190 GNPAAGFSPLVIEPKTTVPLN---VKMDSVPVLTYVNDFGARMPLFFQCNGNSCQVDEEQSRK 249
Cdd:PRK15285 187 GTPARGFSPLVIAPKSNVTLGgdaSELGHSPVLTYVNDYGARLPLIFNCTDNSCAVDEAKSRK 249
PRK15274 PRK15274
putative periplasmic fimbrial chaperone protein SteC; Provisional
 30-248 9.60e-82

putative periplasmic fimbrial chaperone protein SteC; Provisional


Pssm-ID: 185177 [Multi-domain]  Cd Length: 257  Bit Score: 245.46  E-value: 9.60e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271   30 VTPDRTRLIFNESDKSISVTLRNNDPKLPYLAQSWIEDEKGNKITSPLTVLPPVQRIDSMMNGQVKVQGMPDINKLPADR 109
Cdd:PRK15274  28 IVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDR 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271  110 ESMFYFNVREIPPKSNKPNTLQIALQTRIKLFWRPKALEK-VSMKSPWQHKVTLTRSGQAFTVNNPTPYYVIISNASAQK 188
Cdd:PRK15274 108 ESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARqVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKE 187

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16130271  189 NgNPAAGFSPLVIEPKTTVPLNVK---MDSVPVLTYVNDFGARMPLFFQCNGNSCQVDEEQSR 248
Cdd:PRK15274 188 N-ETASGFKNLLIAPREKVTSPIKgasLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTR 249
FimC COG3121
P pilus assembly protein, chaperone PapD [Extracellular structures];
30-232 2.84e-61

P pilus assembly protein, chaperone PapD [Extracellular structures];


Pssm-ID: 442355 [Multi-domain]  Cd Length: 237  Bit Score: 192.51  E-value: 2.84e-61
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271  30 VTPDRTRLIFNESDKSISVTLRNNDPKlPYLAQSWIEDEKGN----KITSPLTVLPPVQRIDSMMNGQVKVQGMPdiNKL 105
Cdd:COG3121  25 ISISPTRVIYPAGDKEASLTLTNTGDT-PYLVQSWVDDWDQDagpdKATAPFVVTPPLFRLEPGKSQTVRIIRTG--PPL 101

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271 106 PADRESMFYFNVREIPPK---SNKPNTLQIALQTRIKLFWRPKALEKVSMKspWQHKVTLTRSGQAFTVNNPTPYYVIIS 182
Cdd:COG3121 102 PQDRESLFRLNVDEIPPKdasEEGKNTLQIALRTRIKLFYRPAGLKGSPED--AAEKLTWSLVGNGLTVTNPGPYYVTLS 179

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 16130271 183 NASAQKNGNPAAGFsPLVIEPKTTVPLNVKMDSVP------VLTYVNDFGARMPLF 232
Cdd:COG3121 180 DLSLGAGGKKLKKG-LGMVLPGSTRRWPLPAGASLaaggkvTWATINDYGGAVPLE 234
PRK15254 PRK15254
fimbrial chaperone protein StdC; Provisional
 30-240 5.89e-47

fimbrial chaperone protein StdC; Provisional


Pssm-ID: 185166 [Multi-domain]  Cd Length: 239  Bit Score: 156.09  E-value: 5.89e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271   30 VTPDRTRLIFNESDKSISVTLRNNDPKLPYLAQSWIEDEKGNKiTSPLTVLPPVQRIDSMMNGQVK---VQGMPDinKLP 106
Cdd:PRK15254  18 VNVDRTRIIMDAPQKTVAITLNNDDKTTPFLAQSWVTDADGVR-TDALMALPPLQRIDAGQKSQVRitqVRGLTD--KLP 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271  107 ADRESMFYFNVREIPPKSNKPNTLQIALQTRIKLFWRPKALEKVSMKSPwQHKVTLTRSGQAFTVNNPTPYYVIISNASA 186
Cdd:PRK15254  95 QDRETLFWFNVRGVPPKPEDDNVLQLAMQSQLKLFYRPKAIIRSSSDQP-ERKLTAERNAGHLTLRNPTPYYITVAWLGA 173

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 16130271  187 QKNgNPAAGFSP-LVIEPKTTVPLNVKMDS---VPVLTYVNDFGARMPLFFQCNGNSC 240
Cdd:PRK15254 174 DRS-HRLSGFREgVMVPPLGSLPLKAVLPAetrTLWVGYIDDYGGLQMNRYACDALNC 230
PapD_N pfam00345
Pili and flagellar-assembly chaperone, PapD N-terminal domain; C2 domain-like beta-sandwich ...
 30-147 7.45e-43

Pili and flagellar-assembly chaperone, PapD N-terminal domain; C2 domain-like beta-sandwich fold. This domain is the n-terminal part of the PapD chaperone protein for pilus and flagellar assembly.


Pssm-ID: 425623  Cd Length: 123  Bit Score: 141.57  E-value: 7.45e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271    30 VTPDRTRLIFNESDKSISVTLRNNDpKLPYLAQSWIEDEKGN----KITSPLTVLPPVQRIDSMMNGQVKVQGMPDinKL 105
Cdd:pfam00345   1 VVLGGTRVIYPAGEKEASVTVSNTG-DNPYLVQSWVDDGNEEgtdeKAKAPFIVTPPLFRLEPGQEQVLRIYTTGP--PL 77

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 16130271   106 PADRESMFYFNVREIPPKSNKP---NTLQIALQTRIKLFWRPKAL 147
Cdd:pfam00345  78 PTDRESLFWLNVLEIPPKDKPKggqNGLQLALRSRIKLFYRPAGL 122
PRK09926 PRK09926
fimbrial chaperone;
35-226 1.10e-39

fimbrial chaperone;


Pssm-ID: 236634 [Multi-domain]  Cd Length: 246  Bit Score: 137.54  E-value: 1.10e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271   35 TRLIFNESDKSISVTLRNNDPKlPYLAQSWIEDEKGN----KITSPLTVLPPVQRIDSMMNGQVKVQGMPDiNKLPADRE 110
Cdd:PRK09926  32 TRIIYKSDQKDVNVRLENKGNN-PLLVQSWLDTGDDNaepgSIKVPFTATPPVSRIDPKRGQTIKLMYTAS-TALPKDRE 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271  111 SMFYFNVREIPPKSNKP-----NTLQIALQTRIKLFWRPKALEKVSMKSPWQHKVTLTRSGQ--AFTVNNPTPYYVIISN 183
Cdd:PRK09926 110 SVFWFNVLEVPPKPDAEkvanqSLLQLAFRTRIKLFYRPDGLKGNPSEAPLALKWSWAGSEGkaSLRVTNPTPYYVSFSS 189

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 16130271  184 ASAQKNG--NPAAGFSplvIEPKTTVPLNVKMDSVPV----LTY--VNDFG 226
Cdd:PRK09926 190 GDLEAGGkrYPVDSKM---IAPFSDESMKVKGLSGKAssgkVHFyaINDFG 237
lfpB PRK15290
fimbrial chaperone;
35-227 5.51e-31

fimbrial chaperone;


Pssm-ID: 237934 [Multi-domain]  Cd Length: 243  Bit Score: 114.70  E-value: 5.51e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271   35 TRLIF--NESDKSISVTlrNNDPKLPYLAQSWIED-EKGNKITSPLTVLPPVQRIDSMMNGQVKVQGMPDINkLPADRES 111
Cdd:PRK15290  44 TRVVYlsNNPDKSISVF--SKEEKIPYLIQAWVDPfNKEDKSKAPFTVIPPVSRLEPSQEKVLRIIHTKGVS-LPDDRES 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271  112 MFYFNVREIPPK-SNK-PNTLQIALQTRIKLFWRPKALEKVSMKSpwQHKVTLTRSGQAFTVNNPTPYYVIISNASAQKN 189
Cdd:PRK15290 121 VFWLNIKNIPPSaSNKaTNSLEIAVKTRIKLFWRPASIRLIPEDA--APKVKWRREGRNLIAENPNPIHISVMDVIVDGH 198

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 16130271  190 GNPAAGFSPLviePKTTVPL--NVKMDSVpVLTYVNDFGA 227
Cdd:PRK15290 199 DVPLNMIRPF---ETLTLPLpaNSAGGQM-TWRFINDYGA 234
PRK15208 PRK15208
molecular chaperone LpfB;
35-227 3.15e-30

molecular chaperone LpfB;


Pssm-ID: 237925 [Multi-domain]  Cd Length: 228  Bit Score: 112.31  E-value: 3.15e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271   35 TRLIFNESDKSISVTLRNNDPKLPYLAQSWIEDEKGNKITsPLTVLPPVQRIDSMMNGQVKVQGMPDinKLPADRESMFY 114
Cdd:PRK15208  28 TRVIYDGSKKEASLTVNNKSKTEEFLIQSWIDDANGNKKT-PFIITPPLFKLDPTKNNVLRIVNITN--TLPQDRESVYW 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271  115 FNVREIPPKSNK---PNTLQIALQTRIKLFWRPKALEKVSMKSPwqHKVTLTRSGQAFTVNNPTPYYVIISNASAQKNGN 191
Cdd:PRK15208 105 INVKAIPAKSEDaenKNVLQIAVRTRLKLFYRPAGLKGNSMDAW--NKLRFTRAGNQIKVENPSAFNLTFNQFYANGRDI 182

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 16130271  192 PAAGFSPLVIEPKTTVPLNVKMDSVPVLTYVNDFGA 227
Cdd:PRK15208 183 EKAGMVPAKGSLNIELPAGTGKVSEVKYNIINDFGT 218
PRK15195 PRK15195
molecular chaperone FimC;
35-230 1.04e-28

molecular chaperone FimC;


Pssm-ID: 185117 [Multi-domain]  Cd Length: 229  Bit Score: 108.41  E-value: 1.04e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271   35 TRLIFNESDKSISVTLRNNDPKLPYLAQSWIEDEKGNK-----ITSPLTVLPPvqriDSMMNGQVKVQGMPdinkLPADR 109
Cdd:PRK15195  32 TRVIYPADAKQTSLAIRNSHTNERYLVNSWIENSSGVKeksfiVTPPLFVSEP----KSENTLRIIYAGPP----LAADR 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271  110 ESMFYFNVREIPP----KSNKPNTLQIALQTRIKLFWRPKALEKVSMKSPWQHKvtLTRSGQAFTVNNPTPYYVIISNAS 185
Cdd:PRK15195 104 ESLFWMNVKAIPSvdknALEGRNVLQLAILSRIKLFVRPINLQELPEEAPDTLK--FSRSGNHLKVHNPSPYYVTLVNLQ 181

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 16130271  186 --AQKNGNpaagfspLVIEPKTTVPLNVKMDSVPVLTY--VNDFGARMP 230
Cdd:PRK15195 182 vgSQKLGN-------AMIAPKVNSQIPLPSGVQGKLKFqtVNDYGAVTP 223
PRK15253 PRK15253
putative fimbrial assembly chaperone protein StcB; Provisional
 35-226 2.89e-28

putative fimbrial assembly chaperone protein StcB; Provisional


Pssm-ID: 185165 [Multi-domain]  Cd Length: 242  Bit Score: 107.83  E-value: 2.89e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271   35 TRLIFNESDKSISVTLRNNDPKLPyLAQSWIEDekGN------KITSPLTVLPPVQRIDSMMNGQVKVQGMPdiNKLPAD 108
Cdd:PRK15253  40 TRVIYPAEKKEVVVQLVNQGEQAS-LVQSWIDD--GNtslppeKIQVPFMLTPPVARVAAESGQQIKIKKMP--NSLPDN 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271  109 RESMFYFNVREIPPKSNK---PNTLQIALQTRIKLFWRPKALEKVSMKSpwQHKVTLTRSGQAFTVNNPTPYYVIISNAS 185
Cdd:PRK15253 115 KESLFYLNVLDIPPNSQEnagKNVLKFAMQNRIKLIWRPSRIAAVTKDS--FQRIGLFRSNKTVIMKNDTANWITVTDVK 192

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 16130271  186 AqknGNPAAGFSPLVIEPKTTVPLNVKMDSVPV--LTYVNDFG 226
Cdd:PRK15253 193 A---GNTKINDQTIMLPPLSTQNINMKYASTSQyeVTIIDDNG 232
PRK15249 PRK15249
fimbrial chaperone;
30-229 4.16e-26

fimbrial chaperone;


Pssm-ID: 237930 [Multi-domain]  Cd Length: 253  Bit Score: 102.18  E-value: 4.16e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271   30 VTPDRTRLIFNESDKSISVTLRNNDpKLPYLAQSWIED-------EKGNKItsPLTVLPPVQRIDSMmNGQVKVQGMPDI 102
Cdd:PRK15249  30 VTILGSRIIYPSTASSVDVQLKNND-AIPYIVQTWFDDgdmntspENSSAM--PFIATPPVFRIQPK-AGQVVRVIYNNT 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271  103 NKLPADRESMFYFNVREIPP----KSNKPNTLQIALQTRIKLFWRPKALEKV-SMKSPWQHKVTLTRSGQA-FTVNNPTP 176
Cdd:PRK15249 106 KKLPQDRESVFWFNVLQVPPtnigSDSGQNKMLVMLRSRIKLFYRPDGLGKPdNLAKKLQIKTVNKGSGKSgIVIVNPQP 185

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 16130271  177 YYVIISNASAQKNGNPA---AGFSPLVIEPKTTVPLNVKMDSVP---VLTYVNDFGARM 229
Cdd:PRK15249 186 WFASLSNLNVKVNGASYnldADMIAPFSSQTWWLPGKRSLKSFSgtvTVTLVNDQGARI 244
PRK15299 PRK15299
fimbrial chaperone protein StiB; Provisional
 35-230 7.70e-26

fimbrial chaperone protein StiB; Provisional


Pssm-ID: 185199 [Multi-domain]  Cd Length: 227  Bit Score: 101.01  E-value: 7.70e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271   35 TRLIFNESDKSISVTLRNNDpKLPYLAQSWIED--EKGNKITSPLTVLPPVQRIDSMMNGQVKVqgMPDINKLPADRESM 112
Cdd:PRK15299  29 TRVIFHGDAKDASISISNSD-NVPYLIQSWAQSisETGASGDAPFMVTPPLFRLNGGQKNVLRI--IRTGGNLPEDRESL 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271  113 FYFNVREIPPKS--NKPNTLQIALQTRIKLFWRPKAL----EKVSMKSPWqhkvtlTRSGQAFTVNNPTPYYVIISNASA 186
Cdd:PRK15299 106 YWLDIKSIPSSNpdNKHNTLMLAVKAEFKLIYRPKALtqkpEEVADRLTW------SRQGRTLTVKNPTPYYMNFATLSV 179

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 16130271  187 QKNGNPAAGFSPLVIEPKTTVPLNVkmdSVPVL-TYVNDFGARMP 230
Cdd:PRK15299 180 GSQKVKAPRYVAPFGNAQYTLPAAA---SGPIAwSIINDFGGTGP 221
PRK15295 PRK15295
fimbrial assembly chaperone;
35-228 8.06e-26

fimbrial assembly chaperone;


Pssm-ID: 237936 [Multi-domain]  Cd Length: 226  Bit Score: 100.79  E-value: 8.06e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271   35 TRLIFNESDKSISVTLRNNDPKlPYLAQSWI---EDEKGNKITSPLTvlPPVQRIDSMMNGQVKVqgMPDINKLPADRES 111
Cdd:PRK15295  26 TRLVFDGNNDESSINVENKDSK-ANLVQSWLsvvDPQVTNKQAFIIT--PPLFRLDAGQKNSIRV--IRSGAPLPADRES 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271  112 MFYFNVREIPPKSNKP--NTLQIALQTRIKLFWRPKALEKVSMKSpWQHKVTLTRSGQAFTVNNPTPYYVIISNASAQKN 189
Cdd:PRK15295 101 MYWLNIKGIPSIDDNAsaNRVEISINTQIKLIYRPPALTKSTPDS-QSQQLKWQTAGDVITVNNPTPYYMNFASVTLNSH 179

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 16130271  190 GNPAAGFSPlviePKTT--VPLNVKMDSVPVLTY--VNDFGAR 228
Cdd:PRK15295 180 EVKSATFVP----PKSSasFKLGSTAAPHGTVTWrlISDYGMS 218
PRK15211 PRK15211
fimbrial chaperone;
35-192 2.98e-24

fimbrial chaperone;


Pssm-ID: 185133 [Multi-domain]  Cd Length: 229  Bit Score: 96.82  E-value: 2.98e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271   35 TRLIFNESDKSISVTLRNNDPKLpYLAQSWIEDEKGNKITSPLTVLPPVQRIDSMMNGQVKVQGMPDInkLPADRESMFY 114
Cdd:PRK15211  29 TRFIYDEGRKNISFEVTNQADQT-YGGQVWIDNTTQGSSTVYMVPAPPFFKVRPKEKQIIRIMKTDSA--LPKDRESLFW 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271  115 FNVREIP--PKSNKPNTLQIALQTRIKLFWRPKALekVSMKSPWQHKVTLTRSGQAFTVNNPTPYYVIISNasAQKNGNP 192
Cdd:PRK15211 106 LNVQEIPpkPKASEGNVLAVALNTQVKLIYRPKAL--KEGRENAEKNLQIIHRGGETYLKNPTPYYFAVTG--VKLNGQP 181
PRK15218 PRK15218
fimbrial assembly chaperone;
35-226 2.14e-23

fimbrial assembly chaperone;


Pssm-ID: 185140 [Multi-domain]  Cd Length: 226  Bit Score: 94.28  E-value: 2.14e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271   35 TRLIFNESDKSISVTLRNNDpKLPYLAQSWIEDEKGN----KITSPLTVLPPVQRIDSMMNGQVKVQGMPdiNKLPADRE 110
Cdd:PRK15218  25 TRIIYPAQKKDITVQLMNDG-KRSSLIQAWIDNGDTSlppeKLQVPFIMTPPVIRVAANSGQQLKIKKLA--NNLPGDRE 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271  111 SMFYFNVREIPPKSNK---PNTLQIALQTRIKLFWRPKALEKVSMKSpwQHKVTLTRSGQAFTVNNPTPYYVIISNASAQ 187
Cdd:PRK15218 102 SLFYLNVLDIPPNSDEnkdKNIIKFALQNRIKLIYRPPGVQKVDKAT--FSRLQLLRAPGSISVKNNSANWITIPEIKAK 179

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 16130271  188 KNGNPAAgfspLVIEPKT--TVPLNVKMDSVPVlTYVNDFG 226
Cdd:PRK15218 180 SKVNKET----LLLAPWSsqSITTTVVVNSYTV-TLIDDSG 215
PRK15246 PRK15246
fimbrial assembly chaperone;
30-209 8.74e-19

fimbrial assembly chaperone;


Pssm-ID: 185158 [Multi-domain]  Cd Length: 233  Bit Score: 82.32  E-value: 8.74e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271   30 VTPDRTRLIFNESDKSISVTLRNNDPKlPYLAQSWIE----DEKGNKITSPLTVLPPVQRidsMMNGQVKVQG--MPDIN 103
Cdd:PRK15246  12 VNIDRTRIIFASDDVAQSLTLSNDNTT-PMLLQVWTDagniDASPDNSKTPLVALPPVFK---MQPGELRTLRllLSSRQ 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271  104 KLPADRESMFYFNVREIPPKS----NKPNTLQIALQTRIKLFWRPKALEKVSMKSpwQHKVTLTRSGQAFTVNNPTPYYV 179
Cdd:PRK15246  88 QLATDRESLFWLNIYQIPPVTqdikNHPRKLVLPLRLRLKILIRPTGLKAPTEAE--EKKLRFIAKENTIRIVNPTSWYM 165

                        170       180       190
                 ....*....|....*....|....*....|..
gi 16130271  180 IISNASAQKngnpaAGFSPLVIEPKT--TVPL 209
Cdd:PRK15246 166 SLTLTMDNK-----KSIGDIMVAPKTalDVPL 192
PRK15188 PRK15188
fimbrial chaperone protein BcfB; Provisional
 35-230 3.40e-18

fimbrial chaperone protein BcfB; Provisional


Pssm-ID: 185110 [Multi-domain]  Cd Length: 228  Bit Score: 80.58  E-value: 3.40e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271   35 TRLIFNESDKSISVTLRNNDPKLPYLAQSWIEDEKGNKITSpLTVLPPVQRIDSMMNGQVKVqgMPDINKLPADRESMFY 114
Cdd:PRK15188  34 TRVIYPQGSKQTSLPIINSSASNVFLIQSWVANADGSRSTD-FIITPPLFVIQPKKENILRI--MYVGPSLPTDRESVFY 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271  115 FNVREIPP-KSNK--PNTLQIALQTRIKLFWRPKALEKVSMKSPWQHKVTLTRsGQaFTVNNPTPYYVIISNASAQKNGN 191
Cdd:PRK15188 111 LNSKAIPSvDKNKltGNSLQIATQSVIKLFIRPKNLAEAPAHAPSTLRCRNER-GQ-LTITNPSPYYVSMVELYSAGKKL 188

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 16130271  192 PAAgfsplVIEPKTTVPLNVKMDSVPVLTyVNDFGARMP 230
Cdd:PRK15188 189 PNT-----MVPPKGAITLPATPGQVSLRT-VNDFGATTP 221
PRK15233 PRK15233
fimbrial chaperone SefB;
35-229 5.25e-16

fimbrial chaperone SefB;


Pssm-ID: 185149 [Multi-domain]  Cd Length: 246  Bit Score: 74.76  E-value: 5.25e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271   35 TRLIFNESDKSISVTLRNnDPKLPYLAQSWI-EDEKGNKitSPLTVLPPVQRIDSmmNGQVKVQGMPDINKLPADRESMF 113
Cdd:PRK15233  47 TRVIYKEDAPSTSFWIMN-EKEYPILVQTQVyNDDKSSK--APFIVTPPILKVES--NARTRLKVIPTSNLFNKNEESLY 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271  114 YFNVREIPP----KSNKPNTLQIALQTR------IKLFWRPKALEKVSMKSpwQHKVTLTRSGQAFTVNNPTPYYVIISN 183
Cdd:PRK15233 122 WLCVKGVPPlndnESNNKNNITTNLNVNvvtnscIKLIYRPKTIDLTTMEI--ADKLKLERKGNSIVIKNPTSSYVNIAN 199

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 16130271  184 AsaqKNGNPAAGFSPLVIEPKTTVPLNVKMDSVPVLTYVNDFGARM 229
Cdd:PRK15233 200 I---KSGNLSFNIPNGYIEPFGYAQLPGGVHSKITLTILDDNGAEI 242
PRK11385 PRK11385
fimbrial chaperone;
35-198 3.38e-14

fimbrial chaperone;


Pssm-ID: 183112 [Multi-domain]  Cd Length: 236  Bit Score: 69.78  E-value: 3.38e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271   35 TRLIFNESDKSISVTLRNNDpklpylAQSWIEDEKGNKIT-----------SPLTVLPPVQRIDSMMNGQVKV-QGMPDI 102
Cdd:PRK11385  33 TRFIFPADRESISILLTNTS------QESWLINSKINRPTrwaggeastvpAPLLAAPPLILLKPGTTGTLRLlRTESDI 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271  103 nkLPADRESMFYFNVREIPPKSNKPNTLQIALQTRIKLFWRPKALEKVSMKSPWQhkVTLTRSGQAFTVNNPTPYYVIIS 182
Cdd:PRK11385 107 --LPVDRETLFELSIASVPSGKVENQSVKVAMRSVFKLFWRPEGLPGDPLEAYQQ--LRWTRNSQGVQLTNPTPYYINLI 182

                        170
                 ....*....|....*.
gi 16130271  183 NASAQKNGNPAAGFSP 198
Cdd:PRK11385 183 QVSVNGKALSNAGVVP 198
PRK15192 PRK15192
pili/flagellar-assembly chaperone;
35-229 8.58e-14

pili/flagellar-assembly chaperone;


Pssm-ID: 185114 [Multi-domain]  Cd Length: 234  Bit Score: 68.58  E-value: 8.58e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271   35 TRLIFNESDKSISVTLRNNDpklpylAQSWIEDE-----------KGNKITSPLTVLPPVQRIDSMMNGQVKV--QGMPd 101
Cdd:PRK15192  29 TRFIYHAGAPALSVPVSNHS------EASWLIDThilpggrwpgtKNEGNITPFVVTPPLFMLSARQENSMRVvyTGAP- 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271  102 inkLPADRESMFYFNVREIPPKSNKPNTLQIALQTRIKLFWRPKALEKVSMKSpWQHKV-TLTRSGQafTVNNPTPYYVI 180
Cdd:PRK15192 102 ---LPADRESLFTLSIAAIPSGKPEANRVQMAFRSALKLLYRPEGLAGNPQQA-YRHLIwSLTPDGA--TVRNPTPYYVT 175

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 16130271  181 I----SNASAQKNGNPAAGFSPLVIE-PKTTVPLNVKMDSvpvltyVNDFGARM 229
Cdd:PRK15192 176 LfllrANERAQDNAGVVAPFATRQTDwCRHTVRCTVRWQS------INDYGRVM 223
PRK09918 PRK09918
putative fimbrial chaperone protein; Provisional
 30-179 8.02e-13

putative fimbrial chaperone protein; Provisional


Pssm-ID: 236632 [Multi-domain]  Cd Length: 230  Bit Score: 65.83  E-value: 8.02e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271   30 VTPDRTRLIFNESDKSISVTLRNNDPKlPYLAQSWIEDEKGNKiTSPLTVLPPVQRIDSmmnGQVKVQGMPDINKLPADR 109
Cdd:PRK09918  26 MVPETSVVIVEESDGEGSINVKNTDSN-PILLYTTLVDLPEDK-SKLLLVTPPVARVEP---GQSQQVRFILKSGSPLNT 100

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271  110 ESMFYFNVREIPPKSNKPNTLQIALQTRIKLFWRPKALEKVsmKSPWQHkVTLTRSGQAFTVNNPTPYYV 179
Cdd:PRK09918 101 EHLLRVSFEGVPPKPGGKNKVVMPIRQDLPVLIQPAALPVV--RDPWKL-LVWSISGNNLVVSNPSPYVV 167
PRK15224 PRK15224
pili assembly chaperone PapD;
35-196 7.75e-11

pili assembly chaperone PapD;


Pssm-ID: 185146 [Multi-domain]  Cd Length: 237  Bit Score: 60.14  E-value: 7.75e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271   35 TRLIFNESdkSISVTLRNNDPK-LPYLAQSWIEDEKGNKiTSPLTVLPPVQRIDSMMNGQVKVqgMPDINKLPADRESMF 113
Cdd:PRK15224  35 TRVIYHAG--TAGATLSVSNPQnYPILVQSSVKAADKSS-PAPFLVMPPLFRLEANQQSQLRI--VRTGGDMPTDRETLQ 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130271  114 YFNVREIPPKSNKPNT--------LQIALQTRIKLFWRPKAL----EKVSMKSPWqhkvtlTRSGQAFTVNNPTPYYVII 181
Cdd:PRK15224 110 WVCIKAVPPENEPSDTqakgatldLNLSINVCDKLIFRPDAVkgtpEDVAGNLRW------VETGNKLKVENPTPFYMNL 183

                        170
                 ....*....|....*
gi 16130271  182 snASAQKNGNPAAGF 196
Cdd:PRK15224 184 --ASVTVGGKPITGL 196
PapD_C pfam02753
Pili assembly chaperone PapD, C-terminal domain; Ig-like beta-sandwich fold. This domain is ...
 171-230 1.27e-10

Pili assembly chaperone PapD, C-terminal domain; Ig-like beta-sandwich fold. This domain is the C-terminal part of the pilus and flagellar-assembly chaperone protein PapD.


Pssm-ID: 426960 [Multi-domain]  Cd Length: 63  Bit Score: 55.73  E-value: 1.27e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16130271   171 VNNPTPYYVIISNASAQKNGNPAAGFsPLVIEPKTTVPLNVKM----DSVPVLTYVNDFGARMP 230
Cdd:pfam02753   1 VKNPTPYYVTFSSLSLGGGGKELALD-PGMVAPFSSQTFAGLPapaaGGTVSYTYINDYGGIVP 63
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH