|
Name |
Accession |
Description |
Interval |
E-value |
| murP |
PRK09586 |
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed |
2-474 |
0e+00 |
|
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
Pssm-ID: 181971 [Multi-domain] Cd Length: 476 Bit Score: 821.62 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 2 AKEISSELLNTILTRVGGPGNIASCGNCMTRLRLGVHDSSLVDP-NIKTLEGVKGVILTSDQVQVVFGPGKAHRAAKAMS 80
Cdd:PRK09586 1 MAKISSELLNTILTRVGGPGNIASCGNCMTRLRLTLHDSSLVDPaAIKTIEGVKGVILSDDQVQVVLGPGKAQRAAKAMN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 81 ELLGEA--PVQDAAEIAAQNKRQLKAKQTSGVQQFLAKFATIFTPLIPGFIAAGLLLGIATLIATVMHVPADAQGTLPDA 158
Cdd:PRK09586 81 ELLGEAaaPVQDLAEIAAQNKRQLKAKQTSGVQQFLAKFATIFTPLIPGFIAAGLLLGIATLIEQVMHVPADAQGTLPDA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 159 LNFMKVFSKGLFTFLVILVGYNAAQAFGGTGVNGAIIAALFLLGYNPAATTGYYAGFHDFFGLPIDPRGNIIGVLIAAWA 238
Cdd:PRK09586 161 LNYMKVFSKGLFTFLSILIGYNAQQAFGGTGVNGAIIASLFLLGYNPAATTGYYAGFHDFFGLPIDPRGNIIGVLIAAIA 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 239 CARIEGMVRRFMPDDLDMLLTSLITLLITATLAYLIIMPLGGWLFEGMSWLFMHLNSNPFGCAVLAGLFLIAVVFGVHQG 318
Cdd:PRK09586 241 GARIERMVRRFMPDDLDMILTSLITLLITGALAFLIIMPLGGWLFEGMSWLFMHLNSNPFGCAVLAGLFLIAVVFGVHQG 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 319 FIPVYLALMDSQGFNSLFPILSMAGAGQVGAALALYWRAQPHSALRSQVRGAIIPGLLGVGEPLIYGVTLPRMKPFVTAC 398
Cdd:PRK09586 321 FIPVYFALMDSQGFNSLFPILAMAGAGQVGAALALYWRAQKHSALRTQVKGAIIPGLLGVGEPLIYGVTLPRMKPFVTAC 400
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16130354 399 LGGAAGGLFIGLIAWWGLPMGLNSAFGPSGLVALPLMTSAQGILPAMAVYAGGILVAWVCGFIFTTLFGCRNVNLD 474
Cdd:PRK09586 401 LGGAAGGFFIGLIAWLGLPVGLNSVFGPSGLVALPLMTSAQGILPGMAVYAGGLLVAYVCGFIFTTLFGCKNVDLD 476
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
103-467 |
1.78e-60 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 204.79 E-value: 1.78e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 103 KAKQTSGVQQFLAKFATIFTPLIPGFIAAGLLLGIATLIATVMHVpaDAQGTLPDALNFMKVFSKGLFTFLVILVGYNAA 182
Cdd:COG1263 1 AKKKKNPLFRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGLL--GEGSFLSGTYQILNAAGDAVFYFLPLLFAIGAA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 183 QAFGGTGVNGAIIAALfLLGYNPAATTGYYAGFHDFFGLP--IDPRGNIIGVLIAAWACARIEGMVRRFMPDDLDMLLTS 260
Cdd:COG1263 79 KGFGGNPALAAVIGYL-LVHPTLLNAYAVAGGYISFLGIPtlIGYQGGVFPGILAGWLAAYLEKFLKKKLPDALGFFFVP 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 261 LITLLITATLAYLIIMPLGGWLFEGMSWLFMHLNSN--PFGCAVLAGLFLIAVVFGVHQGFIPVYLALMDSQGFNSLFPI 338
Cdd:COG1263 158 ILTLLIMVPLALLVIGPIWPPIGNGIAAGLGWIYGLagAIGGFIYGFLYRLLVPTGLHHGLNPIFWFLLGGTGDDGLFPI 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 339 LSMAGAGQVGAALALYWRAQPHSALRSQVRGAIIPGLL-GVGEPLIYGVTLPRMKPFVTACLGGAAGGLFIGLIAWWGlp 417
Cdd:COG1263 238 LAAAMFGQPGAALAVYLKAKPNKKVKGLAISAALTAFLtGITEPAEFGFNLVAPKLFIAHAIGGGLGGAIAGLLGVKA-- 315
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 16130354 418 mglnSAFGPSGLVALPLMTSAQGilPAMAVYAGGILVAWVCGFIFTTLFG 467
Cdd:COG1263 316 ----FSFGVGGLIDFPSILNPGA--TNLLLYLIGLVIAFVYYFVFTFLIG 359
|
|
| PTS-II-ABC-beta |
TIGR01995 |
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS ... |
7-467 |
3.22e-54 |
|
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Pssm-ID: 273919 [Multi-domain] Cd Length: 610 Bit Score: 191.41 E-value: 3.22e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 7 SELLNTILTRVGGPGNIASCGNCMTRLRLGVHDSSLVDPN-IKTLEGVKGVILTSDQVQVVFGpGKAHRAAKAMSELLGE 85
Cdd:TIGR01995 2 QDLAKAIIENVGGKENIESVTHCATRLRFTLKDDAKADTEkLKKISGVITVVKSGGQYQVVIG-NDVNDVYQALMDVLGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 86 apvqdaaeIAAQNKRQLKAKQtSGVQQFLAKFATIFTPLIPGFIAAGLLLGIATLIATVMHVPADAQGTLpdALNFMkvf 165
Cdd:TIGR01995 81 --------DDQAEDDDSKGKK-SILNKLIDLISGVFTPLLPALAGAGLLKAVLTLLTMTGLISADSQTYQ--ILNAM--- 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 166 SKGLFTFLVILVGYNAAQAFGGTGVNGAIIAALFLlgyNPAATTGYYAGFH-DFFGLPIDP---RGNIIGVLIAAWACAR 241
Cdd:TIGR01995 147 GDAVFYFLPILLAITAAKRFKVNPYLAAAIGAALL---HPTLVAMVGSGKPvTFFGIPVTLmsySSSVIPVILAVWLMSY 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 242 IEGMVRRFMPDDLDMLLTSLITLLITATLAYLIIMPLGGWLFEGMSWLFMHLNSNP--FGCAVLAGLFLIAVVFGVHQGF 319
Cdd:TIGR01995 224 VEKFLKKVIPGALKNFLTPLLVMLITVPLTLLIIGPLGNYAGEGISSGILFLYEVSpwLAGALLAALWPVLVMFGLHWAM 303
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 320 IPVYLALMDSQGFNSLF-PILSMAGAGQVGAALALYWRAQpHSALRSQVRGAIIPGLLGVGEPLIYGVTLPRMKPFVTAC 398
Cdd:TIGR01995 304 IPIVINNIATQGFDPLIlPASLAANFAQGGAALAVMLRTK-NKKLKALAGSATISALFGITEPAIYGVNLPLKKPFYAAM 382
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16130354 399 LGGAAGGLFIGLIAwwglpMGLNSAFGPsGLVALPlMTSAQGILPAMAVYAGGILVAWVCGFIFTTLFG 467
Cdd:TIGR01995 383 IGGAVGGAIIGIGS-----VKAFTAFAP-GLLGLP-MFINPSDGANFISALIAIVISFVVSFVLTYFIG 444
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
120-401 |
1.19e-33 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 129.00 E-value: 1.19e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 120 IFTPLIPGFIAAGLLLGIATLIATVMHVPADAQGTLPDALNFMKVFSKGLFTFLVILVGYNAAQAF-GGTGVNGAIIAAL 198
Cdd:pfam02378 3 GFMPPIPLLIAGGILLGLGNLPNDTTGLPAGGFTGDSPLAEILKQAGSAAFGILPILFAIGIAYGLaGGDGVAGAAGLIG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 199 FLL--------GYNPAATTGYYAGFHDFFGLPIDPRGNIIGVLIAAWACARIEGMVRRFMPDDLDMLLTSLITLLITATL 270
Cdd:pfam02378 83 LLSfnlaaaisVALTAAGLSGGGNILGIGLGATGVFGAIIPGLLAAYLYNRFEKNITIKLPDSLPFFVGKRFVPIITGFV 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 271 AYLIIMPLGGWLFEGMS------WLFMHLNSNPFGCAVLAGLFLIAVVFGVHQGFIPVYLALM---------------DS 329
Cdd:pfam02378 163 TLLVIGPVLGLIWPAIQgglnalGLLLIIAGGILGGLIFGFLERLLWPFGLHGAFIAIFWFLPiggsnpianqqaygaGA 242
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16130354 330 QGFNSLFPILSMAGAGQVGAALALYWRAQPHSALRSQVRGAIIPGLLGVGEPLIYGVTLPRMKP-FVTACLGG 401
Cdd:pfam02378 243 AHILTGGFDVMFGGPGATLALYAAAFLFKKSKVKKLLGSAALTPFLFGITEPLEFGFPFVLNPPfFIPAILAG 315
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
7-83 |
8.09e-25 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 97.22 E-value: 8.09e-25
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16130354 7 SELLNTILTRVGGPGNIASCGNCMTRLRLGVHDSSLVDPN-IKTLEGVKGVILTSDQVQVVFGPGKAHRAAKAMSELL 83
Cdd:cd00212 1 EQLAKDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAaLKKLGGVKGVVKNGGQYQVIIGPGVADVYKEAIKLLG 78
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| murP |
PRK09586 |
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed |
2-474 |
0e+00 |
|
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
Pssm-ID: 181971 [Multi-domain] Cd Length: 476 Bit Score: 821.62 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 2 AKEISSELLNTILTRVGGPGNIASCGNCMTRLRLGVHDSSLVDP-NIKTLEGVKGVILTSDQVQVVFGPGKAHRAAKAMS 80
Cdd:PRK09586 1 MAKISSELLNTILTRVGGPGNIASCGNCMTRLRLTLHDSSLVDPaAIKTIEGVKGVILSDDQVQVVLGPGKAQRAAKAMN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 81 ELLGEA--PVQDAAEIAAQNKRQLKAKQTSGVQQFLAKFATIFTPLIPGFIAAGLLLGIATLIATVMHVPADAQGTLPDA 158
Cdd:PRK09586 81 ELLGEAaaPVQDLAEIAAQNKRQLKAKQTSGVQQFLAKFATIFTPLIPGFIAAGLLLGIATLIEQVMHVPADAQGTLPDA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 159 LNFMKVFSKGLFTFLVILVGYNAAQAFGGTGVNGAIIAALFLLGYNPAATTGYYAGFHDFFGLPIDPRGNIIGVLIAAWA 238
Cdd:PRK09586 161 LNYMKVFSKGLFTFLSILIGYNAQQAFGGTGVNGAIIASLFLLGYNPAATTGYYAGFHDFFGLPIDPRGNIIGVLIAAIA 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 239 CARIEGMVRRFMPDDLDMLLTSLITLLITATLAYLIIMPLGGWLFEGMSWLFMHLNSNPFGCAVLAGLFLIAVVFGVHQG 318
Cdd:PRK09586 241 GARIERMVRRFMPDDLDMILTSLITLLITGALAFLIIMPLGGWLFEGMSWLFMHLNSNPFGCAVLAGLFLIAVVFGVHQG 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 319 FIPVYLALMDSQGFNSLFPILSMAGAGQVGAALALYWRAQPHSALRSQVRGAIIPGLLGVGEPLIYGVTLPRMKPFVTAC 398
Cdd:PRK09586 321 FIPVYFALMDSQGFNSLFPILAMAGAGQVGAALALYWRAQKHSALRTQVKGAIIPGLLGVGEPLIYGVTLPRMKPFVTAC 400
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16130354 399 LGGAAGGLFIGLIAWWGLPMGLNSAFGPSGLVALPLMTSAQGILPAMAVYAGGILVAWVCGFIFTTLFGCRNVNLD 474
Cdd:PRK09586 401 LGGAAGGFFIGLIAWLGLPVGLNSVFGPSGLVALPLMTSAQGILPGMAVYAGGLLVAYVCGFIFTTLFGCKNVDLD 476
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
103-467 |
1.78e-60 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 204.79 E-value: 1.78e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 103 KAKQTSGVQQFLAKFATIFTPLIPGFIAAGLLLGIATLIATVMHVpaDAQGTLPDALNFMKVFSKGLFTFLVILVGYNAA 182
Cdd:COG1263 1 AKKKKNPLFRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGLL--GEGSFLSGTYQILNAAGDAVFYFLPLLFAIGAA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 183 QAFGGTGVNGAIIAALfLLGYNPAATTGYYAGFHDFFGLP--IDPRGNIIGVLIAAWACARIEGMVRRFMPDDLDMLLTS 260
Cdd:COG1263 79 KGFGGNPALAAVIGYL-LVHPTLLNAYAVAGGYISFLGIPtlIGYQGGVFPGILAGWLAAYLEKFLKKKLPDALGFFFVP 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 261 LITLLITATLAYLIIMPLGGWLFEGMSWLFMHLNSN--PFGCAVLAGLFLIAVVFGVHQGFIPVYLALMDSQGFNSLFPI 338
Cdd:COG1263 158 ILTLLIMVPLALLVIGPIWPPIGNGIAAGLGWIYGLagAIGGFIYGFLYRLLVPTGLHHGLNPIFWFLLGGTGDDGLFPI 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 339 LSMAGAGQVGAALALYWRAQPHSALRSQVRGAIIPGLL-GVGEPLIYGVTLPRMKPFVTACLGGAAGGLFIGLIAWWGlp 417
Cdd:COG1263 238 LAAAMFGQPGAALAVYLKAKPNKKVKGLAISAALTAFLtGITEPAEFGFNLVAPKLFIAHAIGGGLGGAIAGLLGVKA-- 315
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 16130354 418 mglnSAFGPSGLVALPLMTSAQGilPAMAVYAGGILVAWVCGFIFTTLFG 467
Cdd:COG1263 316 ----FSFGVGGLIDFPSILNPGA--TNLLLYLIGLVIAFVYYFVFTFLIG 359
|
|
| PTS-II-ABC-beta |
TIGR01995 |
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS ... |
7-467 |
3.22e-54 |
|
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Pssm-ID: 273919 [Multi-domain] Cd Length: 610 Bit Score: 191.41 E-value: 3.22e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 7 SELLNTILTRVGGPGNIASCGNCMTRLRLGVHDSSLVDPN-IKTLEGVKGVILTSDQVQVVFGpGKAHRAAKAMSELLGE 85
Cdd:TIGR01995 2 QDLAKAIIENVGGKENIESVTHCATRLRFTLKDDAKADTEkLKKISGVITVVKSGGQYQVVIG-NDVNDVYQALMDVLGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 86 apvqdaaeIAAQNKRQLKAKQtSGVQQFLAKFATIFTPLIPGFIAAGLLLGIATLIATVMHVPADAQGTLpdALNFMkvf 165
Cdd:TIGR01995 81 --------DDQAEDDDSKGKK-SILNKLIDLISGVFTPLLPALAGAGLLKAVLTLLTMTGLISADSQTYQ--ILNAM--- 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 166 SKGLFTFLVILVGYNAAQAFGGTGVNGAIIAALFLlgyNPAATTGYYAGFH-DFFGLPIDP---RGNIIGVLIAAWACAR 241
Cdd:TIGR01995 147 GDAVFYFLPILLAITAAKRFKVNPYLAAAIGAALL---HPTLVAMVGSGKPvTFFGIPVTLmsySSSVIPVILAVWLMSY 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 242 IEGMVRRFMPDDLDMLLTSLITLLITATLAYLIIMPLGGWLFEGMSWLFMHLNSNP--FGCAVLAGLFLIAVVFGVHQGF 319
Cdd:TIGR01995 224 VEKFLKKVIPGALKNFLTPLLVMLITVPLTLLIIGPLGNYAGEGISSGILFLYEVSpwLAGALLAALWPVLVMFGLHWAM 303
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 320 IPVYLALMDSQGFNSLF-PILSMAGAGQVGAALALYWRAQpHSALRSQVRGAIIPGLLGVGEPLIYGVTLPRMKPFVTAC 398
Cdd:TIGR01995 304 IPIVINNIATQGFDPLIlPASLAANFAQGGAALAVMLRTK-NKKLKALAGSATISALFGITEPAIYGVNLPLKKPFYAAM 382
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16130354 399 LGGAAGGLFIGLIAwwglpMGLNSAFGPsGLVALPlMTSAQGILPAMAVYAGGILVAWVCGFIFTTLFG 467
Cdd:TIGR01995 383 IGGAVGGAIIGIGS-----VKAFTAFAP-GLLGLP-MFINPSDGANFISALIAIVISFVVSFVLTYFIG 444
|
|
| PRK09824 |
PRK09824 |
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional |
8-467 |
3.69e-43 |
|
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Pssm-ID: 236627 [Multi-domain] Cd Length: 627 Bit Score: 161.03 E-value: 3.69e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 8 ELLNTILTRVGGPGNIASCGNCMTRLRLGVHDSSLVDPN-IKTLEGVKGVILTSDQVQVVFGpgkaHRAAKAMSELLGEA 86
Cdd:PRK09824 5 ELAREIVAGVGGADNIVSLMHCATRLRFKLKDNSKAQAEvLKKNPGVIMVVESGGQFQVVIG----NHVADVFLAVNSVA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 87 PVQDAAEIAAQNKrqlkaKQTSGVQQFLAKFATIFTPLIPGFIAAGLLLGIATLiATVMHVPADAQGTLpdalNFMKVFS 166
Cdd:PRK09824 81 GLGEKAQQAPEND-----KKGNLLNRFIDVISGIFTPLIGVMAATGILKGMLAL-ALTFGWTTEQSGTY----KILFAAS 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 167 KGLFTFLVILVGYNAAQAFGGTG-----VNGAIIAALFLLGYNPAATTGYYAgfHDFFGLP---IDPRGNIIGVLIAAWA 238
Cdd:PRK09824 151 DALFFFFPIILGYTAGKKFGGNPftamvIGGALVHPLMIAAFEAGQKADALG--LDFLGIPvtlLNYSSSVIPIIFSAWL 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 239 CARIEGMVRRFMPDDLDMLLTSLITLLITATLAYLIIMPLGGWLFE----GMSWLFmHLNSNPFGcAVLAGLFLIAVVFG 314
Cdd:PRK09824 229 CSILERRLNAWLPSAIKNFFTPLLCLMVIVPLTFLLIGPLATWLSEllaaGYQWLY-QAVPAFAG-AVMGAFWQVFVIFG 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 315 VHQGFIPVYLALMDSQGFNSLFPILSMAGAGQVGAALALYWRAQphSALRSQVRG-AIIPGLLGVGEPLIYGVTLPRMKP 393
Cdd:PRK09824 307 LHWGLVPLMINNLTVLGHDTMLPLLMPAVMAQVGAALGVFLCTR--DAQKKVVAGsAFLAGLFGITEPAVYGVNLPLKRP 384
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16130354 394 FVTACLGGAAGGLFIGLIAWWGLPMGLNSAFgpsglvalplmTSAQGILPA---MAVYAG--GILVAWVCGFIFTTLFG 467
Cdd:PRK09824 385 FIFGCISGALGAAIIGYAQTKVYSFGLPSIF-----------TFMQTIPPTgidFTVWASviGTVIAIGCAFVGTVMFG 452
|
|
| PRK11007 |
PRK11007 |
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional |
1-466 |
7.81e-36 |
|
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Pssm-ID: 182896 Cd Length: 473 Bit Score: 138.28 E-value: 7.81e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 1 MAKEISSELLNTILTRVGGPGNIASCGNCMTRLRLGVHDSSLVDP-NIKTLEGVKGVILTSDQVQVVFGPgKAHRAAKAM 79
Cdd:PRK11007 1 MMSKINQQDIDRLIELVGGRENIATVSHCITRLRFVLNDPANADPkEIEQLPMVKGCFTNAGQFQVVIGT-EVGDYYKAL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 80 SELLGEAPV-QDAAEIAAQnkrqlkaKQTSGVQQFLAKFATIFTPLIPGFIAAGLLLGIATLIATVM----HVPADAQGT 154
Cdd:PRK11007 80 IATTGQAEVdKEQAKKAAR-------QNMKWHERLISHFAEIFFPLLPALISGGLILGFRNVIGDIPmsdgQTLAQMYPF 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 155 LPDALNFMKVFSKGLFTFLVILVGYNAAQAFGGTGVNGaIIAALFLLgyNPAATTGYYAGFH-----DFFGLPIDPRG-- 227
Cdd:PRK11007 153 WQTIYDFLWLIGEAIFFYLPVGICWSAVKKMGGTPILG-IVLGVTLV--SPQLMNAYLLGQQlpevwDFGLFSIEKVGyq 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 228 -NIIGVLIAAWACARIEGMVRRFMPDDLDMLLTSLITLLITATLAYLIIMPLGGWLFEGMSWLFMHLNSN---PFGCAVL 303
Cdd:PRK11007 230 aQVIPALLAGLALGFIETRLKRIVPDYLYLVVVPVCSLILAVFLAHALIGPFGRMIGDGVAFAVKALMTGsfaPIGAALF 309
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 304 AGLFLIAVVFGVHQGFIPVYLALMDSQGFNSLFPILSMAGAGQVGAALALYWRAQPHSALRSQVRGAiIPGLLGVGEPLI 383
Cdd:PRK11007 310 GFLYAPLVITGVHQTTLAIDLQMIQSMGGTPVWPLIALSNIAQASAVVGIIIISRKHNEREISVPAA-ISAYLGVTEPAM 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 384 YGVTLPRMKPFVTACLGGAAGGLFIGLIAWwglpmgLNSAFGPSGlvaLPLMTSAQgilPAM-AVYAGGILVAWVCGFIF 462
Cdd:PRK11007 389 YGINLKYRFPMLCAMIGSALAGLICGLNGV------MANGIGVGG---LPGILSIQ---PQYwQVYALAMLVAIVVPIVL 456
|
....
gi 16130354 463 TTLF 466
Cdd:PRK11007 457 TSFI 460
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
120-401 |
1.19e-33 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 129.00 E-value: 1.19e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 120 IFTPLIPGFIAAGLLLGIATLIATVMHVPADAQGTLPDALNFMKVFSKGLFTFLVILVGYNAAQAF-GGTGVNGAIIAAL 198
Cdd:pfam02378 3 GFMPPIPLLIAGGILLGLGNLPNDTTGLPAGGFTGDSPLAEILKQAGSAAFGILPILFAIGIAYGLaGGDGVAGAAGLIG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 199 FLL--------GYNPAATTGYYAGFHDFFGLPIDPRGNIIGVLIAAWACARIEGMVRRFMPDDLDMLLTSLITLLITATL 270
Cdd:pfam02378 83 LLSfnlaaaisVALTAAGLSGGGNILGIGLGATGVFGAIIPGLLAAYLYNRFEKNITIKLPDSLPFFVGKRFVPIITGFV 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 271 AYLIIMPLGGWLFEGMS------WLFMHLNSNPFGCAVLAGLFLIAVVFGVHQGFIPVYLALM---------------DS 329
Cdd:pfam02378 163 TLLVIGPVLGLIWPAIQgglnalGLLLIIAGGILGGLIFGFLERLLWPFGLHGAFIAIFWFLPiggsnpianqqaygaGA 242
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16130354 330 QGFNSLFPILSMAGAGQVGAALALYWRAQPHSALRSQVRGAIIPGLLGVGEPLIYGVTLPRMKP-FVTACLGG 401
Cdd:pfam02378 243 AHILTGGFDVMFGGPGATLALYAAAFLFKKSKVKKLLGSAALTPFLFGITEPLEFGFPFVLNPPfFIPAILAG 315
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
7-83 |
8.09e-25 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 97.22 E-value: 8.09e-25
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16130354 7 SELLNTILTRVGGPGNIASCGNCMTRLRLGVHDSSLVDPN-IKTLEGVKGVILTSDQVQVVFGPGKAHRAAKAMSELL 83
Cdd:cd00212 1 EQLAKDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAaLKKLGGVKGVVKNGGQYQVIIGPGVADVYKEAIKLLG 78
|
|
| PtsG2 |
COG1264 |
Phosphotransferase system IIB components [Carbohydrate transport and metabolism]; |
7-83 |
9.16e-23 |
|
Phosphotransferase system IIB components [Carbohydrate transport and metabolism];
Pssm-ID: 440876 [Multi-domain] Cd Length: 76 Bit Score: 91.72 E-value: 9.16e-23
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16130354 7 SELLNTILTRVGGPGNIASCGNCMTRLRLGVHDSSLVDPN-IKTLeGVKGVILTSDQVQVVFGPGkAHRAAKAMSELL 83
Cdd:COG1264 1 KELAKDILEALGGKENIVSVDHCATRLRVTVKDPSKVDEAaLKKL-GVKGVVKNGGQVQVIIGPG-VDKVADEIEKLL 76
|
|
| PRK09796 |
PRK09796 |
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional |
1-467 |
1.07e-22 |
|
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Pssm-ID: 182081 Cd Length: 472 Bit Score: 100.64 E-value: 1.07e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 1 MAKEISsELLNTILTRVGGPGNIASCGNCMTRLRLGVHDSSLVD-PNIKTLEGVKGVILTSDQVQVVFGpgkaHRAAKAM 79
Cdd:PRK09796 1 MAKNYA-ALARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDsPTLKTIPGVLGVVRSDNQCQVIIG----NTVSQAF 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 80 SELLGEAPvQDAAEIAAQNKRQLKAKQTSGvqQFLAKFATIFTPLIPGFIAAGLLLGIATLIATVMHVPADAQgtlpdAL 159
Cdd:PRK09796 76 QEVVSLLP-GDMQPAQPVGKPKLTLRRIGA--GILDALIGTMSPLIPAIIGGSMVKLLAMILEMSGVLTKGSP-----TL 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 160 NFMKVFSKGLFTFLVILVGYNAAQAFgGTGVNGAIIAALFLLGYNPAATTGYYA-GFH-DFFGLPIDPRG---NIIGVLI 234
Cdd:PRK09796 148 TILNVIGDGAFFFLPLMVAASAAIKF-KTNMSLAIAIAGVLVHPSFIELMAKAAqGEHvEFALIPVTAVKytyTVIPALV 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 235 AAWACARIEGMVRRFMPDDLDMLLTSLITLLITATLAYLIIMPLGGWLFEGMSWL--FMHLNSNPFGCAVLAGLFLIAVV 312
Cdd:PRK09796 227 MTWCLSYIERWVDRITPAVTKNFLKPMLIVLIAAPLAILLIGPIGIWIGSAISALvyTIHGYLGWLSVAIMGALWPLLVM 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 313 FGVHQGFIPVYLALMDSQGFNSL-FPILSMAGAGQVGAALALYWRAQPHSALRSQVRGAIIPGLLGVGEPLIYGVTLPRM 391
Cdd:PRK09796 307 TGMHRVFTPTIIQTIAETGKEGMvMPSEIGANLSLGGSSLAVAWKTKNPELRQTALAAAASAIMAGISEPALYGVAIRLK 386
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 392 KPFVTACLGGAAGGLFIGLiawwglpMGLNSafgpSGLVALPLMTSAQGILPA---MAVYAGGILV-AWVCGFIFTTLFG 467
Cdd:PRK09796 387 RPLIASLISGFICGAVAGM-------AGLAS----HSMAAPGLFTSVQFFDPAnpmSIVWVFAVMAlAVVLSFILTLLLG 455
|
|
| pts-Glc |
TIGR00852 |
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside ... |
166-447 |
2.13e-21 |
|
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIC domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273299 Cd Length: 289 Bit Score: 93.92 E-value: 2.13e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 166 SKGLFTFLVILVGYNAAQAFGGTGVNGAIIAALflLGYnPAATTGYYAG---FHDFFGLPIDP---RGNIIGVLIAAWAC 239
Cdd:TIGR00852 1 GSAAFFFLPLLFAIGAAKGFGGNPYLGAALAGI--LVH-PVLNNAMGVGaqaVGNFFGFEIAKvgyTGVVGPIIVGAIAL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 240 ARIEGMVRRFMPDDLDMLLTSLITLLITATLAYLIIMPLGGW-----LFEGMSWLFMHLNsnPFGCAVLAGLFLIAVVFG 314
Cdd:TIGR00852 78 ALHERFLDKKLPDVLGFFLGPRFVVIIAGFVAILLIGPLGRVwppvgISALLHWLYSAGG--ALGGAIFGFLYRLLVPTG 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 315 VHQGFIPVYLALMDSQ---GFNSLFPILSMAGAGQVGAALALYWRAQPHsALRSQVRGAIIPGLLGVGEPLIYGVTLPRM 391
Cdd:TIGR00852 156 LHHIFYAIFIQLIAGGtviGGGQVIPGDALANMAQGGAALAVFFTAGDA-KFKSIGLPAAFSAGLGITEPAMYGVALRER 234
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 16130354 392 KPFVTACLGGAAGGLFIGLIawwGLPMGLNSAFGPSGLVAL--PLMTSAQGILPAMAV 447
Cdd:TIGR00852 235 RPFVAGLIGSALLTAFLTGI---TEPLEFLFLFGAPGLYSIhaVLAGSIFTVAIGMGI 289
|
|
| PTS_EIIB |
pfam00367 |
phosphotransferase system, EIIB; |
13-42 |
1.93e-09 |
|
phosphotransferase system, EIIB;
Pssm-ID: 459785 [Multi-domain] Cd Length: 32 Bit Score: 52.76 E-value: 1.93e-09
10 20 30
....*....|....*....|....*....|
gi 16130354 13 ILTRVGGPGNIASCGNCMTRLRLGVHDSSL 42
Cdd:pfam00367 3 ILEALGGKENIKSVDHCATRLRLTVKDESK 32
|
|
| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
13-68 |
1.70e-08 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 51.59 E-value: 1.70e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 16130354 13 ILTRVGGPGNIASCGNCMTRLRLGVHDSSLVDPNIKTLEGVKGVILTSDQVQVVFG 68
Cdd:TIGR00826 33 QIQALGGTGNVNKVDACITRLRVGVADVSKVDDAVLKKLGAHGVNPLQRAVQVISG 88
|
|
| PRK10110 |
PRK10110 |
PTS maltose transporter subunit IICB; |
13-84 |
2.96e-07 |
|
PTS maltose transporter subunit IICB;
Pssm-ID: 182245 [Multi-domain] Cd Length: 530 Bit Score: 52.81 E-value: 2.96e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16130354 13 ILTRVGGPGNIASCGNCMTRLRLGVHDSSLVDPNIKTLEGVKGVI-LTSDQVQVVFGPgKAHRAAKAMSELLG 84
Cdd:PRK10110 455 ILEALGGADNIVSLDNCITRLRLSVKDMSLVDVQALKDNRAIGVVqLNQHNLQVVIGP-QVQSVKDEMAGLMH 526
|
|
| PRK09702 |
PRK09702 |
PTS sugar transporter subunit IIB; |
13-68 |
4.17e-07 |
|
PTS sugar transporter subunit IIB;
Pssm-ID: 77355 [Multi-domain] Cd Length: 161 Bit Score: 49.71 E-value: 4.17e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 16130354 13 ILTRVGGPGNIASCGNCMTRLRLGVHD-SSLVDPNIKTLEGVKGVILTSDQVQVVFG 68
Cdd:PRK09702 76 ILQALGGVGNISSINNCATRLRIALHDmSQTLDDEVFKKLGAHGVFRSGDAIQVIIG 132
|
|
| PRK14905 |
PRK14905 |
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; ... |
7-83 |
2.80e-05 |
|
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Pssm-ID: 184898 [Multi-domain] Cd Length: 355 Bit Score: 46.18 E-value: 2.80e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16130354 7 SELLNTILTRVGGPGNIASCGNCMTRLRLGVHDSSLVDPN-IKTLEGVKGVILTSDQVQVVFGPGKAHRAAKAMSELL 83
Cdd:PRK14905 275 SEIAIQLIDHLGGKDNISALTHCASRIRVMLRNDGHIDKSaIEKIDCVKGLFSIANQYQIILGAGIVEKIHEEMKALL 352
|
|
| PRK11089 |
PRK11089 |
PTS system glucose-specific transporter subunits IIBC; Provisional |
6-69 |
6.44e-05 |
|
PTS system glucose-specific transporter subunits IIBC; Provisional
Pssm-ID: 182955 [Multi-domain] Cd Length: 477 Bit Score: 45.09 E-value: 6.44e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16130354 6 SSELLNTILTRVGGPGNIASCGNCMTRLRLGVHDSSLVD-PNIKTLeGVKGVILTSDQVQVVFGP 69
Cdd:PRK11089 398 TSEMAPALVAAFGGKENITNLDACITRLRVSVADVSKVDqAGLKKL-GAAGVVVAGSGVQAIFGT 461
|
|
| PRK10255 |
PRK10255 |
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional |
7-124 |
2.52e-04 |
|
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Pssm-ID: 182338 [Multi-domain] Cd Length: 648 Bit Score: 43.71 E-value: 2.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130354 7 SELLNTILTRVGGPGNIASCGNCMTRLRLGVHDSSLVDPNIKTLEGVKGVI-LTSDQVQVVFGpGKAHRAAKAMSELLGE 85
Cdd:PRK10255 390 TQLATNYIAAVGGTDNLKAIDACITRLRLTVADSARVNDAMCKRLGASGVVkLNKQTIQVIVG-AKAESIGDAMKKVVAR 468
|
90 100 110
....*....|....*....|....*....|....*....
gi 16130354 86 APVQdAAEIAAQNKRQLKAKQTSGVQQfLAKFATIFTPL 124
Cdd:PRK10255 469 GPVA-AASAEATPATAAPVAKPQAVPN-AVSIAELVSPI 505
|
|
| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
31-70 |
4.17e-03 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 36.57 E-value: 4.17e-03
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 16130354 31 TRLRLGVHDSSLVDPN-IKTLEGVKGVILTSDQVQVVFGPG 70
Cdd:TIGR00826 1 TRLRLKTPGREKADEEaIAAGEGVKGVFTAAGQIQALGGTG 41
|
|
| |
