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Conserved domains on  [gi|16130414|ref|NP_416984|]
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hydrogenase 4 catalytic subunit HyfI [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

NADH-quinone oxidoreductase subunit B family protein( domain architecture ID 10007134)

NADH-quinone oxidoreductase subunit B (NuoB) family protein such as Escherichia coli formate hydrogenlyase subunit 7

EC:  1.-.-.-
Gene Ontology:  GO:0048038|GO:0008137|GO:0022900|GO:1990204
PubMed:  9299297|10449365
SCOP:  4000435

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HycG COG3260
Ni,Fe-hydrogenase III small subunit [Energy production and conversion];
30-164 4.71e-80

Ni,Fe-hydrogenase III small subunit [Energy production and conversion];


:

Pssm-ID: 442491  Cd Length: 137  Bit Score: 236.61  E-value: 4.71e-80
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130414  30 IRRSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDHKICVSYG 109
Cdd:COG3260   3 LGRSLWIRHVDAGSCNGCEIEILALLTPRYDLERFGIKFVASPRHADVLLVTGPVTRNMREALLRTYEAMPEPKVVVAVG 82

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*
gi 16130414 110 ACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQKIH 164
Cdd:COG3260  83 DCACSGGVFRDSYAVLGGVDKVIPVDVYIPGCPPRPEAILDGLLKALGRLEEKLK 137
 
Name Accession Description Interval E-value
HycG COG3260
Ni,Fe-hydrogenase III small subunit [Energy production and conversion];
30-164 4.71e-80

Ni,Fe-hydrogenase III small subunit [Energy production and conversion];


Pssm-ID: 442491  Cd Length: 137  Bit Score: 236.61  E-value: 4.71e-80
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130414  30 IRRSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDHKICVSYG 109
Cdd:COG3260   3 LGRSLWIRHVDAGSCNGCEIEILALLTPRYDLERFGIKFVASPRHADVLLVTGPVTRNMREALLRTYEAMPEPKVVVAVG 82

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*
gi 16130414 110 ACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQKIH 164
Cdd:COG3260  83 DCACSGGVFRDSYAVLGGVDKVIPVDVYIPGCPPRPEAILDGLLKALGRLEEKLK 137
PRK06411 PRK06411
NADH-quinone oxidoreductase subunit NuoB;
41-163 3.61e-38

NADH-quinone oxidoreductase subunit NuoB;


Pssm-ID: 235797  Cd Length: 183  Bit Score: 131.64  E-value: 3.61e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130414   41 CGGCnaCEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMrMPALR-AYESAPDHKICVSYGACGVGGGIFH 119
Cdd:PRK06411  43 GLAC--CAIEMMAAGTSRYDLDRFGMVFRASPRQADLMIVAGTLTNKM-APALRrLYDQMPEPKWVISMGSCANSGGMYH 119

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 16130414  120 DLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAvalgLLQQKI 163
Cdd:PRK06411 120 YSYSVVQGVDRIVPVDVYVPGCPPRPEALLYGIL----KLQKKI 159
nuoB_fam TIGR01957
NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that ...
 47-163 1.25e-36

NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2. [Energy metabolism, Electron transport]


Pssm-ID: 273896  Cd Length: 145  Bit Score: 126.31  E-value: 1.25e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130414    47 CEIEIFAAITPVFDAERFGIKVV-SSPRHADILLFTGAVTRAMrMPAL-RAYESAPDHKICVSYGACGVGGGIFHDLYSV 124
Cdd:TIGR01957  29 CAIEMMATGASRYDLDRFGSEVFrASPRQADVMIVAGTVTKKM-APALrRLYDQMPEPKWVISMGACANSGGMFHTSYSV 107

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 16130414   125 WGGSDTIVPIDVWIPGCPPTPAATIHGFAvalgLLQQKI 163
Cdd:TIGR01957 108 VQGVDRIVPVDVYIPGCPPRPEALIYGLI----KLQKKI 142
Oxidored_q6 pfam01058
NADH ubiquinone oxidoreductase, 20 Kd subunit;
44-153 2.25e-29

NADH ubiquinone oxidoreductase, 20 Kd subunit;


Pssm-ID: 426021 [Multi-domain]  Cd Length: 124  Bit Score: 106.90  E-value: 2.25e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130414    44 CNACEIEIFAAITPVFDA-----ERFGIKVVSSPR----HADILLFTGAVTRAMRMPALRAYESAPDHKICVSYGACGVG 114
Cdd:pfam01058   1 CTGCTISLLALHPPLLDLldlisLRYGIPLMASPReipeGADVLLVEGAVTRKPKEALERLYEAAPKAKYVIAVGTCAAF 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 16130414   115 GGIF--HDLYSV-WGGSDTIVPIDVWIPGCPPTPAATIHGFA 153
Cdd:pfam01058  81 GGIPaaGNNPSYgVRPVLEVVPVDINIPGCPPHPEAILGTLL 122
 
Name Accession Description Interval E-value
HycG COG3260
Ni,Fe-hydrogenase III small subunit [Energy production and conversion];
30-164 4.71e-80

Ni,Fe-hydrogenase III small subunit [Energy production and conversion];


Pssm-ID: 442491  Cd Length: 137  Bit Score: 236.61  E-value: 4.71e-80
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130414  30 IRRSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDHKICVSYG 109
Cdd:COG3260   3 LGRSLWIRHVDAGSCNGCEIEILALLTPRYDLERFGIKFVASPRHADVLLVTGPVTRNMREALLRTYEAMPEPKVVVAVG 82

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*
gi 16130414 110 ACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQKIH 164
Cdd:COG3260  83 DCACSGGVFRDSYAVLGGVDKVIPVDVYIPGCPPRPEAILDGLLKALGRLEEKLK 137
NuoB COG0377
NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy ...
 47-163 1.27e-39

NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy production and conversion]; NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440146  Cd Length: 152  Bit Score: 134.15  E-value: 1.27e-39
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130414  47 CEIEIFAAITPVFDAERFGIKVV-SSPRHADILLFTGAVTRAMrMPAL-RAYESAPDHKICVSYGACGVGGGIFHDLYSV 124
Cdd:COG0377  26 CAIEMMAAGASRYDLERFGAEVPrASPRQADLMIVAGTVTKKM-APVLrRLYEQMPEPKWVIAMGACAISGGPYWDSYSV 104

                        90       100       110
                ....*....|....*....|....*....|....*....
gi 16130414 125 WGGSDTIVPIDVWIPGCPPTPAATIHGFAvalgLLQQKI 163
Cdd:COG0377 105 VQGVDKIIPVDVYVPGCPPRPEALLDGIL----KLQEKI 139
PRK06411 PRK06411
NADH-quinone oxidoreductase subunit NuoB;
41-163 3.61e-38

NADH-quinone oxidoreductase subunit NuoB;


Pssm-ID: 235797  Cd Length: 183  Bit Score: 131.64  E-value: 3.61e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130414   41 CGGCnaCEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMrMPALR-AYESAPDHKICVSYGACGVGGGIFH 119
Cdd:PRK06411  43 GLAC--CAIEMMAAGTSRYDLDRFGMVFRASPRQADLMIVAGTLTNKM-APALRrLYDQMPEPKWVISMGSCANSGGMYH 119

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 16130414  120 DLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAvalgLLQQKI 163
Cdd:PRK06411 120 YSYSVVQGVDRIVPVDVYVPGCPPRPEALLYGIL----KLQKKI 159
nuoB_fam TIGR01957
NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that ...
 47-163 1.25e-36

NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2. [Energy metabolism, Electron transport]


Pssm-ID: 273896  Cd Length: 145  Bit Score: 126.31  E-value: 1.25e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130414    47 CEIEIFAAITPVFDAERFGIKVV-SSPRHADILLFTGAVTRAMrMPAL-RAYESAPDHKICVSYGACGVGGGIFHDLYSV 124
Cdd:TIGR01957  29 CAIEMMATGASRYDLDRFGSEVFrASPRQADVMIVAGTVTKKM-APALrRLYDQMPEPKWVISMGACANSGGMFHTSYSV 107

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 16130414   125 WGGSDTIVPIDVWIPGCPPTPAATIHGFAvalgLLQQKI 163
Cdd:TIGR01957 108 VQGVDRIVPVDVYIPGCPPRPEALIYGLI----KLQKKI 142
Oxidored_q6 pfam01058
NADH ubiquinone oxidoreductase, 20 Kd subunit;
44-153 2.25e-29

NADH ubiquinone oxidoreductase, 20 Kd subunit;


Pssm-ID: 426021 [Multi-domain]  Cd Length: 124  Bit Score: 106.90  E-value: 2.25e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130414    44 CNACEIEIFAAITPVFDA-----ERFGIKVVSSPR----HADILLFTGAVTRAMRMPALRAYESAPDHKICVSYGACGVG 114
Cdd:pfam01058   1 CTGCTISLLALHPPLLDLldlisLRYGIPLMASPReipeGADVLLVEGAVTRKPKEALERLYEAAPKAKYVIAVGTCAAF 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 16130414   115 GGIF--HDLYSV-WGGSDTIVPIDVWIPGCPPTPAATIHGFA 153
Cdd:pfam01058  81 GGIPaaGNNPSYgVRPVLEVVPVDINIPGCPPHPEAILGTLL 122
PRK14819 PRK14819
NADH-quinone oxidoreductase subunit B;
43-165 1.34e-27

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 237822  Cd Length: 264  Bit Score: 106.61  E-value: 1.34e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130414   43 GCNACEIEIFAAITPVFDAERFGIKVV-SSPRHADILLFTGAVTRAMRMPALRAYESAPDHKICVSYGACGVGGGIFHDL 121
Cdd:PRK14819  39 GLACCAIEMMATGLSRYDLARFGAELFrASPRQADLMIVAGTVTKKMAPQVVRLYNQMPEPRYVISMGACATSGGPFRDG 118

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 16130414  122 YSVWGGSDTIVPIDVWIPGCPPTPAATIHgfavALGLLQQKIHA 165
Cdd:PRK14819 119 YNVLRGIDLLIPVDVYIPGCPPRPEALLH----ALMTLQKQIDA 158
ndhK CHL00023
NADH dehydrogenase subunit K
 43-173 2.13e-26

NADH dehydrogenase subunit K


Pssm-ID: 214337  Cd Length: 225  Bit Score: 102.48  E-value: 2.13e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130414   43 GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTraMRM-PAL-RAYESAPDHKICVSYGACGVGGGIFH- 119
Cdd:CHL00023  40 GTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVT--MKMaPSLvRLYEQMPEPKYVIAMGACTITGGMFSt 117

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 16130414  120 DLYSVWGGSDTIVPIDVWIPGCPPTPAATIHgfavALGLLQQKIHAVDYRDPTG 173
Cdd:CHL00023 118 DSYSTVRGVDKLIPVDVYLPGCPPKPEAVID----AITKLRKKISREIYEDRIR 167
PRK14820 PRK14820
NADH-quinone oxidoreductase subunit B;
47-152 4.58e-26

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 184833  Cd Length: 180  Bit Score: 100.29  E-value: 4.58e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130414   47 CEIEIFAAITPVFDAERFGIKVVS-SPRHADILLFTGAVTRAMrMPALR-AYESAPDHKICVSYGACGVGGGIFhDLYSV 124
Cdd:PRK14820  45 CGIEFMATMASHYDLARFGSERPSfSPRQADMLMVMGTIAKKM-APVLKqVYLQMAEPRWVVAVGACASSGGIF-DTYSV 122

                         90       100
                 ....*....|....*....|....*...
gi 16130414  125 WGGSDTIVPIDVWIPGCPPTPAATIHGF 152
Cdd:PRK14820 123 LQGIDRIIPVDVYVPGCPPRPEQIIDGV 150
PRK13292 PRK13292
NADH-quinone oxidoreductase subunit B/C/D;
43-165 9.98e-26

NADH-quinone oxidoreductase subunit B/C/D;


Pssm-ID: 183955 [Multi-domain]  Cd Length: 788  Bit Score: 105.63  E-value: 9.98e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130414   43 GCNACEIEIFAAITPVFDAERFGIKVV-SSPRHADILLFTGAVTRAMRMPALRAYESAPDHKICVSYGACGVGGGIFhDL 121
Cdd:PRK13292  30 GLSCCFVEMMTSFTSRYDISRFGAEVLrGTPREADLMVIAGTVFKKMAPSILRLYEQMAEPKWVISMGSCANSGGMY-DV 108

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 16130414  122 YSVWGGSDTIVPIDVWIPGCPPTPAATIHGfavaLGLLQQKIHA 165
Cdd:PRK13292 109 YSVVQGVNQILPVDVYIPGCPPRPEAFLQG----LMLLQEKIRR 148
PRK14815 PRK14815
NADH dehydrogenase subunit B; Provisional
 43-163 2.06e-25

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 237821  Cd Length: 183  Bit Score: 98.44  E-value: 2.06e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130414   43 GCNACEIEIFAAITPVFDAERFGIKVVS-SPRHADILLFTGAVTRAMRMPALRAYESAPDHKICVSYGACGVGGGIFHDl 121
Cdd:PRK14815  41 GLACCAIELMAVACSRFDISRFGAEVMRfSPRQADVMIVAGTVTYKMALAVRRIYDQMPEPKWVIAMGACASSGGMYRS- 119

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 16130414  122 YSVWGGSDTIVPIDVWIPGCPPTPAATIHgfavALGLLQQKI 163
Cdd:PRK14815 120 YSVLQGVDRILPVDVYISGCPPRPEAILD----ALIKLQKKI 157
PRK14816 PRK14816
NADH-quinone oxidoreductase subunit B;
47-163 1.91e-24

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 173277  Cd Length: 182  Bit Score: 96.13  E-value: 1.91e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130414   47 CEIEIFAAITPVFDAERFGIKVV-SSPRHADILLFTGAVTRAMRMPALRAYESAPDHKICVSYGACGVGGGIFHDLYSVW 125
Cdd:PRK14816  53 CGIEFMALGAARYDMARFGFEVArASPRQADMIMVCGTITNKMAPVLKRLYDQMADPKYVIAVGGCAVSGGPFKKSYHVL 132

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 16130414  126 GGSDTIVPIDVWIPGCPPTPAATIHGFAvalgLLQQKI 163
Cdd:PRK14816 133 NGVDKILPVDVYIPGCPPRPEAFYYGMM----QLQRKV 166
PRK14818 PRK14818
NADH dehydrogenase subunit B; Provisional
 43-165 8.41e-24

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173279  Cd Length: 173  Bit Score: 94.25  E-value: 8.41e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130414   43 GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDHKICVSYGACGVGGGIFHDLY 122
Cdd:PRK14818  39 GLACCGIELMQTGGPRADVMRFGAIPRASPRQADFMIVAGTLTYKMAERARLLYDQMPEPKYVISMGSCSNCGGLFQLGY 118

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 16130414  123 SVWGGSDTIVPIDVWIPGCPPTPAATIHGfavaLGLLQQKIHA 165
Cdd:PRK14818 119 SVCKGVDKVIPVDVYVPGCPPRPEALTEG----LLRLQEIVRS 157
PRK14817 PRK14817
NADH-quinone oxidoreductase subunit B;
47-179 1.52e-23

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 173278  Cd Length: 181  Bit Score: 93.49  E-value: 1.52e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130414   47 CEIEIFAAITPVFDAERFGIKVVS-SPRHADILLFTGAVTrAMRMPAL-RAYESAPDHKICVSYGACGVGGGiFHDLYSV 124
Cdd:PRK14817  47 CGMEYMTMASARYDSDRFGAAMPRfSPRQADLLMVVGTVN-CKQAPILqRVYEQMADPKWVMAFGVCASSGG-FYDNYAT 124

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 16130414  125 WGGSDTIVPIDVWIPGCPPTPAATIHGfavaLGLLQQKI----HAVDYRDPTGVTMQPL 179
Cdd:PRK14817 125 VQGIDRIIPVDVYVPGCPPRPEQVLDG----IMLLQKKIqnqsHKLIDRKPLPVIAGGA 179
PRK14813 PRK14813
NADH dehydrogenase subunit B; Provisional
 43-152 1.57e-23

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173274  Cd Length: 189  Bit Score: 93.79  E-value: 1.57e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130414   43 GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDHKICVSYGACG-VGGGIFHDL 121
Cdd:PRK14813  36 GLACCAIEMMATNASNYDLERFGIFPRSSPRQSDLMIVAGTVTMKMAERVVRLYEQMPEPRYVLSMGSCSnCGGPYWEHG 115

                         90       100       110
                 ....*....|....*....|....*....|.
gi 16130414  122 YSVWGGSDTIVPIDVWIPGCPPTPAATIHGF 152
Cdd:PRK14813 116 YHVLKGVDRIIPVDVYVPGCPPRPEALIGGL 146
PRK14814 PRK14814
NADH dehydrogenase subunit B; Provisional
 47-165 5.80e-22

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173275  Cd Length: 186  Bit Score: 89.70  E-value: 5.80e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130414   47 CEIEIFAAITPVFDAERFGIKVVS-SPRHADILLFTGAVTRAMrMPALRA-YESAPDHKICVSYGACGVGGGIFHDlYSV 124
Cdd:PRK14814  45 CGIEYMSTACSDYDIARFGAERPSfSPRQADMILVLGTITYKM-APVLRQiYDQMAEPKFVISVGACASSGGMFHT-YGV 122

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 16130414  125 WGGSDTIVPIDVWIPGCPPTPAATIHgfavALGLLQQKIHA 165
Cdd:PRK14814 123 LQGVDRILPVDVYVPGCPPRPEAILD----ALVKLQTKLKT 159
FrhG COG1941
Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion];
39-147 5.20e-06

Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion];


Pssm-ID: 441544 [Multi-domain]  Cd Length: 262  Bit Score: 46.46  E-value: 5.20e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130414  39 VDCGGCNACEIEI------FAAITPVFDAERFgiKVVSS----PRHADILLFTGAVT--------RAMRmpalrayESAp 100
Cdd:COG1941   9 YWLAGCSGCQLSFldlderLLDLLELVEIVYF--PEASDvkeiPEPVDVALVEGSIRneeneerlKEIR-------EKS- 78

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16130414 101 dhKICVSYGACGVGGGI-----FHD----LYSVWGGSDT----------------------IVPIDVWIPGCPPTPAA 147
Cdd:COG1941  79 --KILVALGACAVTGGIpalrnLYDleelLERVYGETPStnpqipgeelpelldrvrplseVVKVDYELPGCPPDPDQ 154
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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