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Conserved domains on  [gi|16130441|ref|NP_417011|]
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cytoskeleton protein RodZ [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

helix-turn-helix domain-containing protein( domain architecture ID 11484993)

helix-turn-helix domain-containing protein with DUF4115 domain(s), similar to cytoskeleton protein RodZ, an inner membrane protein which functions in cell-shape control through regulation of the length of the long axis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10856 PRK10856
cytoskeleton protein RodZ;
1-332 0e+00

cytoskeleton protein RodZ;


:

Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 623.97  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130441    1 MNTEATHDQNEALTTGARLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPADLASTFLRGYIRSYARLVHIPEEELL 80
Cdd:PRK10856   1 MNTEATQDQNEALTTGERLRQAREQLGLTQQAVAERLCLKVSTVRDIEEDKAPADLASTFLRGYIRSYARLVHIPEEELL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130441   81 PGLEKQAPLRAAKVAPMQSFSLGKRRKKRDGWLMTFTWLVLFVVIGLSGAWWWQDRKAQQEEITTMADQSSAELSSNseQ 160
Cdd:PRK10856  81 PGLEKQAPLRAAKVAPMQSFSLGKRRKKRDGWLMTFTWLVLFVVIGLTGAWWWQNHKAQQEEITTMADQSSAELSQN--S 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130441  161 GQSVPLNTSTTTDPATTSTPPASVDTTATNTQTPAV-TAPAPAVDPQQNAVVSPSQANVDTAATPAPTAATTPDGAAPLP 239
Cdd:PRK10856 159 GQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVaTAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLP 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130441  240 TDQAGVTTPVADPNALVMNFTADCWLEVTDATGKKLFSGMQRKDGNLNLTGQAPYKLKIGAPAAVQIQYQGKPVDLSRFI 319
Cdd:PRK10856 239 TDQAGVSTPAADPNALVMNFTADCWLEVTDATGKKLFSGMQRKGGNLNLTGQAPYKLKIGAPAAVQIQYQGKPVDLSRFI 318

                        330
                 ....*....|...
gi 16130441  320 RTNQVARLTLNAE 332
Cdd:PRK10856 319 RTNQVARLTLNAE 331
 
Name Accession Description Interval E-value
PRK10856 PRK10856
cytoskeleton protein RodZ;
1-332 0e+00

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 623.97  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130441    1 MNTEATHDQNEALTTGARLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPADLASTFLRGYIRSYARLVHIPEEELL 80
Cdd:PRK10856   1 MNTEATQDQNEALTTGERLRQAREQLGLTQQAVAERLCLKVSTVRDIEEDKAPADLASTFLRGYIRSYARLVHIPEEELL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130441   81 PGLEKQAPLRAAKVAPMQSFSLGKRRKKRDGWLMTFTWLVLFVVIGLSGAWWWQDRKAQQEEITTMADQSSAELSSNseQ 160
Cdd:PRK10856  81 PGLEKQAPLRAAKVAPMQSFSLGKRRKKRDGWLMTFTWLVLFVVIGLTGAWWWQNHKAQQEEITTMADQSSAELSQN--S 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130441  161 GQSVPLNTSTTTDPATTSTPPASVDTTATNTQTPAV-TAPAPAVDPQQNAVVSPSQANVDTAATPAPTAATTPDGAAPLP 239
Cdd:PRK10856 159 GQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVaTAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLP 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130441  240 TDQAGVTTPVADPNALVMNFTADCWLEVTDATGKKLFSGMQRKDGNLNLTGQAPYKLKIGAPAAVQIQYQGKPVDLSRFI 319
Cdd:PRK10856 239 TDQAGVSTPAADPNALVMNFTADCWLEVTDATGKKLFSGMQRKGGNLNLTGQAPYKLKIGAPAAVQIQYQGKPVDLSRFI 318

                        330
                 ....*....|...
gi 16130441  320 RTNQVARLTLNAE 332
Cdd:PRK10856 319 RTNQVARLTLNAE 331
RodZ COG1426
Cytoskeletal protein RodZ, contains Xre-like HTH and DUF4115 domains [Cell cycle control, cell ...
 11-80 6.34e-24

Cytoskeletal protein RodZ, contains Xre-like HTH and DUF4115 domains [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441035 [Multi-domain]  Cd Length: 71  Bit Score: 92.94  E-value: 6.34e-24
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130441  11 EALTTGARLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPADLASTFLRGYIRSYARLVHIPEEELL 80
Cdd:COG1426   2 ALETIGELLRQAREAKGLSLEDVAERTKISVSYLEAIEEGDFDALPGPVYVRGFLRSYARALGLDPEELL 71
DUF4115 pfam13464
Domain of unknown function (DUF4115); This short domain is often found at the C-terminus of ...
 256-322 1.03e-22

Domain of unknown function (DUF4115); This short domain is often found at the C-terminus of proteins containing a helix-turn-helix domain. The function of this domain is unknown.


Pssm-ID: 433229 [Multi-domain]  Cd Length: 67  Bit Score: 89.55  E-value: 1.03e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16130441   256 VMNFTADCWLEVTDATGKKLFSGMQRKDGNLNLTGQAPYKLKIGAPAAVQIQYQGKPVDLSRFIRTN 322
Cdd:pfam13464   1 VLTFTGDSWVEVRDADGKVLFEGLLKAGETRTVTGKPPLTLVLGNAGAVEVSVNGKPVDLLGYARGN 67
HTH_XRE cd00093
Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the ...
 16-79 9.47e-09

Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.


Pssm-ID: 238045 [Multi-domain]  Cd Length: 58  Bit Score: 51.01  E-value: 9.47e-09
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16130441  16 GARLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPADLAstflrgYIRSYARLVHIPEEEL 79
Cdd:cd00093   1 GERLKELRKEKGLTQEELAEKLGVSRSTISRIENGKRNPSLE------TLEKLAKALGVSLDEL 58
HTH_XRE smart00530
Helix-turn-helix XRE-family like proteins;
18-79 1.99e-08

Helix-turn-helix XRE-family like proteins;


Pssm-ID: 197775 [Multi-domain]  Cd Length: 56  Bit Score: 49.82  E-value: 1.99e-08
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16130441     18 RLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPADLAstflrgYIRSYARLVHIPEEEL 79
Cdd:smart00530   1 RLKELREEKGLTQEELAEKLGVSRSTLSRIENGKRKPSLE------TLKKLAKALGVSLDEL 56
couple_hipB TIGR03070
transcriptional regulator, y4mF family; Members of this family belong to a clade of ...
 16-59 1.98e-04

transcriptional regulator, y4mF family; Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems. [Regulatory functions, DNA interactions]


Pssm-ID: 213767 [Multi-domain]  Cd Length: 58  Bit Score: 38.79  E-value: 1.98e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 16130441    16 GARLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPADLAST 59
Cdd:TIGR03070   4 GILVRARRKALGLTQADLADLAGVGLRFIRDLENGKPTVRLDKV 47
 
Name Accession Description Interval E-value
PRK10856 PRK10856
cytoskeleton protein RodZ;
1-332 0e+00

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 623.97  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130441    1 MNTEATHDQNEALTTGARLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPADLASTFLRGYIRSYARLVHIPEEELL 80
Cdd:PRK10856   1 MNTEATQDQNEALTTGERLRQAREQLGLTQQAVAERLCLKVSTVRDIEEDKAPADLASTFLRGYIRSYARLVHIPEEELL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130441   81 PGLEKQAPLRAAKVAPMQSFSLGKRRKKRDGWLMTFTWLVLFVVIGLSGAWWWQDRKAQQEEITTMADQSSAELSSNseQ 160
Cdd:PRK10856  81 PGLEKQAPLRAAKVAPMQSFSLGKRRKKRDGWLMTFTWLVLFVVIGLTGAWWWQNHKAQQEEITTMADQSSAELSQN--S 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130441  161 GQSVPLNTSTTTDPATTSTPPASVDTTATNTQTPAV-TAPAPAVDPQQNAVVSPSQANVDTAATPAPTAATTPDGAAPLP 239
Cdd:PRK10856 159 GQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVaTAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLP 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130441  240 TDQAGVTTPVADPNALVMNFTADCWLEVTDATGKKLFSGMQRKDGNLNLTGQAPYKLKIGAPAAVQIQYQGKPVDLSRFI 319
Cdd:PRK10856 239 TDQAGVSTPAADPNALVMNFTADCWLEVTDATGKKLFSGMQRKGGNLNLTGQAPYKLKIGAPAAVQIQYQGKPVDLSRFI 318

                        330
                 ....*....|...
gi 16130441  320 RTNQVARLTLNAE 332
Cdd:PRK10856 319 RTNQVARLTLNAE 331
RodZ COG1426
Cytoskeletal protein RodZ, contains Xre-like HTH and DUF4115 domains [Cell cycle control, cell ...
 11-80 6.34e-24

Cytoskeletal protein RodZ, contains Xre-like HTH and DUF4115 domains [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441035 [Multi-domain]  Cd Length: 71  Bit Score: 92.94  E-value: 6.34e-24
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130441  11 EALTTGARLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPADLASTFLRGYIRSYARLVHIPEEELL 80
Cdd:COG1426   2 ALETIGELLRQAREAKGLSLEDVAERTKISVSYLEAIEEGDFDALPGPVYVRGFLRSYARALGLDPEELL 71
DUF4115 pfam13464
Domain of unknown function (DUF4115); This short domain is often found at the C-terminus of ...
 256-322 1.03e-22

Domain of unknown function (DUF4115); This short domain is often found at the C-terminus of proteins containing a helix-turn-helix domain. The function of this domain is unknown.


Pssm-ID: 433229 [Multi-domain]  Cd Length: 67  Bit Score: 89.55  E-value: 1.03e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16130441   256 VMNFTADCWLEVTDATGKKLFSGMQRKDGNLNLTGQAPYKLKIGAPAAVQIQYQGKPVDLSRFIRTN 322
Cdd:pfam13464   1 VLTFTGDSWVEVRDADGKVLFEGLLKAGETRTVTGKPPLTLVLGNAGAVEVSVNGKPVDLLGYARGN 67
HTH_25 pfam13413
Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA.
 18-79 1.05e-14

Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA.


Pssm-ID: 433187 [Multi-domain]  Cd Length: 62  Bit Score: 67.91  E-value: 1.05e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16130441    18 RLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKaPADL-ASTFLRGYIRSYARLVHIPEEEL 79
Cdd:pfam13413   1 RLRAAREARGLSLEDVAERTKIRPRYLEALEEDD-FDALpEPVYARGFLRSYARALGLDPEEL 62
aMBF1 COG1813
Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and ...
 1-56 1.33e-09

Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains [Translation, ribosomal structure and biogenesis];


Pssm-ID: 441418 [Multi-domain]  Cd Length: 70  Bit Score: 53.79  E-value: 1.33e-09
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 16130441   1 MNTEATHDqnEALTTGARLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPADL 56
Cdd:COG1813   1 MAKESTGE--LVEDYGERIREAREARGLSQEELAEKLGVSESTIRRIERGEATPSL 54
HipB COG1396
Transcriptional regulator, contains XRE-family HTH domain [Transcription];
16-88 7.56e-09

Transcriptional regulator, contains XRE-family HTH domain [Transcription];


Pssm-ID: 441006 [Multi-domain]  Cd Length: 83  Bit Score: 51.92  E-value: 7.56e-09
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16130441  16 GARLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPADLAStflrgyIRSYARLVHIPEEELLPGLEKQAP 88
Cdd:COG1396   9 GERLRELRKARGLTQEELAERLGVSRSTISRIERGRRNPSLET------LLKLAKALGVSLDELLGGADEELP 75
HTH_XRE cd00093
Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the ...
 16-79 9.47e-09

Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.


Pssm-ID: 238045 [Multi-domain]  Cd Length: 58  Bit Score: 51.01  E-value: 9.47e-09
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16130441  16 GARLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPADLAstflrgYIRSYARLVHIPEEEL 79
Cdd:cd00093   1 GERLKELRKEKGLTQEELAEKLGVSRSTISRIENGKRNPSLE------TLEKLAKALGVSLDEL 58
HTH_XRE smart00530
Helix-turn-helix XRE-family like proteins;
18-79 1.99e-08

Helix-turn-helix XRE-family like proteins;


Pssm-ID: 197775 [Multi-domain]  Cd Length: 56  Bit Score: 49.82  E-value: 1.99e-08
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16130441     18 RLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPADLAstflrgYIRSYARLVHIPEEEL 79
Cdd:smart00530   1 RLKELREEKGLTQEELAEKLGVSRSTLSRIENGKRKPSLE------TLKKLAKALGVSLDEL 56
HTH_31 pfam13560
Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA.
 16-79 2.69e-07

Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA.


Pssm-ID: 433309 [Multi-domain]  Cd Length: 64  Bit Score: 47.14  E-value: 2.69e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16130441    16 GARLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPadLAStflRGYIRSYARLVHIPEEEL 79
Cdd:pfam13560   3 GARLRRLRERAGLSQEALARRLGVSRSTLSRLETGRRG--RPS---PAVVERLARALGVDGAER 61
HTH_19 pfam12844
Helix-turn-helix domain; Members of this family contains a DNA-binding helix-turn-helix domain. ...
 16-82 6.61e-07

Helix-turn-helix domain; Members of this family contains a DNA-binding helix-turn-helix domain. This family contains many example antitoxins from bacterial toxin-antitoxin systems. These antitoxins are likely to be DNA-binding domains.


Pssm-ID: 463728 [Multi-domain]  Cd Length: 64  Bit Score: 46.13  E-value: 6.61e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16130441    16 GARLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPADlASTFLRgyirsYARLVHIPEEELLPG 82
Cdd:pfam12844   1 GERLRKAREERGLTQEELAERLGISRSQLSAIENGKSVPP-AETLYK-----IAELLGVPANWLLQG 61
HTH_3 pfam01381
Helix-turn-helix; This large family of DNA binding helix-turn helix proteins includes Cro and ...
 19-79 2.24e-06

Helix-turn-helix; This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within the protein Swiss:Q5F9C2, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteriztic of the whole family.


Pssm-ID: 460181 [Multi-domain]  Cd Length: 55  Bit Score: 44.07  E-value: 2.24e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16130441    19 LRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPADLAstflrgYIRSYARLVHIPEEEL 79
Cdd:pfam01381   1 LKELREELGLSQEELAEKLGVSRSTISKIENGKREPSLE------TLKKLAEALGVSLDEL 55
XRE COG1476
DNA-binding transcriptional regulator, XRE-family HTH domain [Transcription];
16-84 3.03e-06

DNA-binding transcriptional regulator, XRE-family HTH domain [Transcription];


Pssm-ID: 441085 [Multi-domain]  Cd Length: 68  Bit Score: 44.07  E-value: 3.03e-06
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16130441  16 GARLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPADLaSTFLRgyirsYARLVHIPEEELLPGLE 84
Cdd:COG1476   6 GNRLKELRKERGLTQEELAELLGVSRQTISAIENGKYNPSL-ELALK-----IARALGVSLEELFSLEE 68
YiaG COG2944
DNA-binding transcriptional regulator YiaG, XRE-type HTH domain [Transcription];
15-62 7.24e-05

DNA-binding transcriptional regulator YiaG, XRE-type HTH domain [Transcription];


Pssm-ID: 442187 [Multi-domain]  Cd Length: 64  Bit Score: 40.30  E-value: 7.24e-05
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 16130441  15 TGARLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKA-PADLASTFLR 62
Cdd:COG2944   7 TPEEIRALRERLGLSQAEFAALLGVSVSTVRRWEQGRRkPSGAALKLLR 55
couple_hipB TIGR03070
transcriptional regulator, y4mF family; Members of this family belong to a clade of ...
 16-59 1.98e-04

transcriptional regulator, y4mF family; Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems. [Regulatory functions, DNA interactions]


Pssm-ID: 213767 [Multi-domain]  Cd Length: 58  Bit Score: 38.79  E-value: 1.98e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 16130441    16 GARLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPADLAST 59
Cdd:TIGR03070   4 GILVRARRKALGLTQADLADLAGVGLRFIRDLENGKPTVRLDKV 47
PRK09943 PRK09943
HTH-type transcriptional regulator PuuR;
10-54 3.49e-04

HTH-type transcriptional regulator PuuR;


Pssm-ID: 182158 [Multi-domain]  Cd Length: 185  Bit Score: 40.93  E-value: 3.49e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 16130441   10 NEALTTGARLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDK-APA 54
Cdd:PRK09943   3 DEGLAPGKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKvSPA 48
AF2118 COG3620
Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain ...
 1-52 9.52e-04

Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair) [Transcription];


Pssm-ID: 442838 [Multi-domain]  Cd Length: 95  Bit Score: 38.08  E-value: 9.52e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|..
gi 16130441   1 MNTEATHDQNEAlTTGARLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKA 52
Cdd:COG3620   5 MSRDVVTVSPDD-TLGEALRLMRKELGLSQLPVAELVGVSQSDILRIESGKR 55
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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