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Conserved domains on  [gi|16130526|ref|NP_417096|]
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lipoprotein YfiB [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

PRK09967 family protein( domain architecture ID 11484538)

PRK09967 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK09967 PRK09967
OmpA family protein;
1-160 3.00e-120

OmpA family protein;


:

Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 335.41  E-value: 3.00e-120
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130526    1 MIKHLVAPLVFTSLILTGCQSPQGKFTPEQVAAMQSYGFTESAGDWSLGLSDAILFAKNDYKLLPESQQQIQTMAAKLAS 80
Cdd:PRK09967   1 MIKHLVAPLIFTSLILTGCQSPQGKFTPEQVAAMQSYGFTESAGDWSLGLSDAILFAKNDYKLLPESQQQIQTMAAKLAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130526   81 TGLTHARMDGHTDNYGEDSYNEGLSLKRANVVADAWAMGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITTP 160
Cdd:PRK09967  81 TGLTHARMDGHTDNYGEDSYNEGLSLKRANVVADAWAMGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITTP 160
 
Name Accession Description Interval E-value
PRK09967 PRK09967
OmpA family protein;
1-160 3.00e-120

OmpA family protein;


Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 335.41  E-value: 3.00e-120
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130526    1 MIKHLVAPLVFTSLILTGCQSPQGKFTPEQVAAMQSYGFTESAGDWSLGLSDAILFAKNDYKLLPESQQQIQTMAAKLAS 80
Cdd:PRK09967   1 MIKHLVAPLIFTSLILTGCQSPQGKFTPEQVAAMQSYGFTESAGDWSLGLSDAILFAKNDYKLLPESQQQIQTMAAKLAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130526   81 TGLTHARMDGHTDNYGEDSYNEGLSLKRANVVADAWAMGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITTP 160
Cdd:PRK09967  81 TGLTHARMDGHTDNYGEDSYNEGLSLKRANVVADAWAMGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITTP 160
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 54-157 1.59e-35

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 119.19  E-value: 1.59e-35
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130526  54 ILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNYGEDSYNEGLSLKRANVVADAWAMGGqIPRSNLTTQGLG 133
Cdd:cd07185   4 IYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKG-VDASRITAVGYG 82

                        90       100
                ....*....|....*....|....
gi 16130526 134 KKYPIASNKTAQGRAENRRVAVVI 157
Cdd:cd07185  83 ESRPIASNDTEEGRAKNRRVEIVI 106
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 50-160 1.95e-33

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 119.50  E-value: 1.95e-33
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130526  50 LSDAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNYGEDSYNEGLSLKRANVVADAWAMGGqIPRSNLTT 129
Cdd:COG2885 185 LLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLALSERRAEAVKDYLVSKG-IPASRITA 263

                        90       100       110
                ....*....|....*....|....*....|.
gi 16130526 130 QGLGKKYPIASNKTAQGRAENRRVAVVITTP 160
Cdd:COG2885 264 VGYGESRPVASNDTEEGRAKNRRVEIVVLKK 294
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 56-150 4.71e-17

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 71.62  E-value: 4.71e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130526    56 FAKNDYKLLPESQQQIQTMAAKLASTGLTHA-RMDGHTDNYGEDSYNEGLSLKRANVVADAWAMGGqIPRSNLTTQGLGK 134
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPELKNTiTIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFG-VPPSRISVVGYGA 79

                          90
                  ....*....|....*.
gi 16130526   135 KYPIASNKTAQGRAEN 150
Cdd:pfam00691  80 TKPITDNKTPEGRARN 95
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
 26-157 5.95e-17

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 72.33  E-value: 5.95e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130526    26 FTPEQvaAMQSYGFTESAGDWSLGLSDAILFAKNDYKLLPESQQQIQTMAAKLASTGlTHARMDGHTDNYGEDSY----N 101
Cdd:TIGR03350   6 LAPEI--AAGLLTVDEDGDRSVVRLRGDELFASGSAEVRAEFEPLLLRIAKALAAVP-GRITVVGHTDNVPIRTArfpsN 82

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 16130526   102 EGLSLKRANVVADAWAMGGqIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVI 157
Cdd:TIGR03350  83 WHLSEARAKAVADVLAQAG-GPAGRVRAEGRGDSEPIASNATAAGRARNRRVEIDV 137
 
Name Accession Description Interval E-value
PRK09967 PRK09967
OmpA family protein;
1-160 3.00e-120

OmpA family protein;


Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 335.41  E-value: 3.00e-120
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130526    1 MIKHLVAPLVFTSLILTGCQSPQGKFTPEQVAAMQSYGFTESAGDWSLGLSDAILFAKNDYKLLPESQQQIQTMAAKLAS 80
Cdd:PRK09967   1 MIKHLVAPLIFTSLILTGCQSPQGKFTPEQVAAMQSYGFTESAGDWSLGLSDAILFAKNDYKLLPESQQQIQTMAAKLAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130526   81 TGLTHARMDGHTDNYGEDSYNEGLSLKRANVVADAWAMGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITTP 160
Cdd:PRK09967  81 TGLTHARMDGHTDNYGEDSYNEGLSLKRANVVADAWAMGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITTP 160
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 54-157 1.59e-35

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 119.19  E-value: 1.59e-35
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130526  54 ILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNYGEDSYNEGLSLKRANVVADAWAMGGqIPRSNLTTQGLG 133
Cdd:cd07185   4 IYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKG-VDASRITAVGYG 82

                        90       100
                ....*....|....*....|....
gi 16130526 134 KKYPIASNKTAQGRAENRRVAVVI 157
Cdd:cd07185  83 ESRPIASNDTEEGRAKNRRVEIVI 106
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 50-160 1.95e-33

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 119.50  E-value: 1.95e-33
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130526  50 LSDAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNYGEDSYNEGLSLKRANVVADAWAMGGqIPRSNLTT 129
Cdd:COG2885 185 LLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLALSERRAEAVKDYLVSKG-IPASRITA 263

                        90       100       110
                ....*....|....*....|....*....|.
gi 16130526 130 QGLGKKYPIASNKTAQGRAENRRVAVVITTP 160
Cdd:COG2885 264 VGYGESRPVASNDTEEGRAKNRRVEIVVLKK 294
MotB COG1360
Flagellar motor protein MotB [Cell motility];
48-159 5.75e-19

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 78.73  E-value: 5.75e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130526  48 LGLSDAILFAKNDYKLLPESQQQIQTMAAKLASTGLtHARMDGHTDN--YGEDSY--NEGLSLKRANVVADAWAMGGqIP 123
Cdd:COG1360  55 IEIQDRVLFDSGSAELTPEGRELLDKIAAVLAEVPN-RIRVEGHTDNvpISTARFpsNWELSAARAAAVVRYLIEGG-VP 132

                        90       100       110
                ....*....|....*....|....*....|....*.
gi 16130526 124 RSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITT 159
Cdd:COG1360 133 PERLSAVGYGDTRPLAPNDTPEGRARNRRVEIVILR 168
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 56-150 4.71e-17

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 71.62  E-value: 4.71e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130526    56 FAKNDYKLLPESQQQIQTMAAKLASTGLTHA-RMDGHTDNYGEDSYNEGLSLKRANVVADAWAMGGqIPRSNLTTQGLGK 134
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPELKNTiTIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFG-VPPSRISVVGYGA 79

                          90
                  ....*....|....*.
gi 16130526   135 KYPIASNKTAQGRAEN 150
Cdd:pfam00691  80 TKPITDNKTPEGRARN 95
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
 26-157 5.95e-17

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 72.33  E-value: 5.95e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130526    26 FTPEQvaAMQSYGFTESAGDWSLGLSDAILFAKNDYKLLPESQQQIQTMAAKLASTGlTHARMDGHTDNYGEDSY----N 101
Cdd:TIGR03350   6 LAPEI--AAGLLTVDEDGDRSVVRLRGDELFASGSAEVRAEFEPLLLRIAKALAAVP-GRITVVGHTDNVPIRTArfpsN 82

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 16130526   102 EGLSLKRANVVADAWAMGGqIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVI 157
Cdd:TIGR03350  83 WHLSEARAKAVADVLAQAG-GPAGRVRAEGRGDSEPIASNATAAGRARNRRVEIDV 137
PRK09038 PRK09038
flagellar motor protein MotD; Reviewed
 50-158 6.61e-14

flagellar motor protein MotD; Reviewed


Pssm-ID: 181618 [Multi-domain]  Cd Length: 281  Bit Score: 66.96  E-value: 6.61e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130526   50 LSDAILFAKNDYKLLPESQQQIQTMAAKLASTGLThARMDGHTDNY--GEDSY--NEGLSLKRANVVADAWAMGGQIPrS 125
Cdd:PRK09038 131 INSSLLFGSGDAMLSDQAFAILEKVAEVLKPAPNP-IHVEGFTDNVpiATAQFpsNWELSAARAASVVRLLADDGVAP-S 208

                         90       100       110
                 ....*....|....*....|....*....|...
gi 16130526  126 NLTTQGLGKKYPIASNKTAQGRAENRRVAVVIT 158
Cdd:PRK09038 209 RLAAVGYGEFQPVADNDTAEGRARNRRVVLVIL 241
PRK10510 PRK10510
OmpA family lipoprotein;
34-158 4.36e-12

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 61.43  E-value: 4.36e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130526   34 MQSYGF--TESAGDWSLGLSDAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNYGEDSYNEGLSLKRANV 111
Cdd:PRK10510  92 MRGTGVsvTRSGDNIILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVVGYTDSTGSHDLNMRLSQQRADS 171

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 16130526  112 VADAWAMGGqIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVIT 158
Cdd:PRK10510 172 VASALITQG-VDASRIRTQGMGPANPIASNSTAEGKAQNRRVEITLS 217
PRK10808 PRK10808
outer membrane protein A; Reviewed
 27-160 2.33e-11

outer membrane protein A; Reviewed


Pssm-ID: 236764 [Multi-domain]  Cd Length: 351  Bit Score: 60.47  E-value: 2.33e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130526   27 TPEQVAAMQSYGFTesagdwslgLSDAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMD--GHTDNYGEDSYNEGL 104
Cdd:PRK10808 208 APAPAPVVQTKHFT---------LKSDVLFNFNKATLKPEGQQALDQLYSQLSNLDPKDGSVVvlGYTDRIGSDAYNQGL 278

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16130526  105 SLKRANVVADaWAMGGQIPRSNLTTQGLGKKYPIASNK--TAQGRAE-------NRRVAV-------VITTP 160
Cdd:PRK10808 279 SEKRAQSVVD-YLVSKGIPADKISARGMGKSNPVTGNTcdNVKPRAAlidclapDRRVEIevkgikdVVTQP 349
PRK08126 PRK08126
hypothetical protein; Provisional
 90-158 4.52e-11

hypothetical protein; Provisional


Pssm-ID: 236157 [Multi-domain]  Cd Length: 432  Bit Score: 59.71  E-value: 4.52e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16130526   90 GHTDNY----GEDSYNEGLSLKRANVVADAWAMGGqIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVIT 158
Cdd:PRK08126 360 GHTDNQpirsAQFASNLVLSEKRAAQVAQMLQSAG-VPASRLEAVGKGDAQPVADNRTPQGRAQNRRVEITVA 431
PRK09040 PRK09040
hypothetical protein; Provisional
 48-153 3.09e-10

hypothetical protein; Provisional


Pssm-ID: 181620 [Multi-domain]  Cd Length: 214  Bit Score: 56.18  E-value: 3.09e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130526   48 LGLSDAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARM---DGHTDNY----GEDSY--NEGLSLKRANVVADAWAM 118
Cdd:PRK09040  84 IGISGSVLFALNSDQLQPEGRELLKSLAGPLAAYLRARDEIlmvSGFTDDQpvraGNRRFadNWELSAQRALTVTRALID 163

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 16130526  119 GGqIPRSNLTTQGLGKKYPIASNKTAQGRAENRRV 153
Cdd:PRK09040 164 AG-VPASSVFAAAFGSEQPVASNADDEGRAKNRRV 197
motB PRK06667
flagellar motor protein MotB; Validated
 50-159 3.75e-09

flagellar motor protein MotB; Validated


Pssm-ID: 180652 [Multi-domain]  Cd Length: 252  Bit Score: 53.64  E-value: 3.75e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130526   50 LSDAILFAKNDYKLLPESQQQIQTMAAKLASTGLT--HARMDGHTDNY-----GEDSYNEGLSLKRANVVADAWAMGGQI 122
Cdd:PRK06667 124 ASDAFFYPGSAEVKLEENRETLQKIASFIGFLDLAgrNFRIEGHTDNVdvnpeGPWKSNWELSGARAVNMLEYILNYGDQ 203

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 16130526  123 PRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITT 159
Cdd:PRK06667 204 SESWFQVSGFAGSRPLATEDTPEGRAYNRRIDIVILT 240
motB PRK08457
flagellar motor protein MotB; Reviewed
 47-155 2.34e-08

flagellar motor protein MotB; Reviewed


Pssm-ID: 181435 [Multi-domain]  Cd Length: 257  Bit Score: 51.64  E-value: 2.34e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130526   47 SLGLSDAILFAKNDYKLL-PESQQQIQTMAA---KLASTglTHARMDGHTDNY------GEDSYNegLSLKRANVVADAW 116
Cdd:PRK08457 117 ALKLPSKLLFENGSAEIInADMMDYLKRIAKiitKLPKQ--VKINVRGYTDNSplnksrYKDHYE--LAAARAYNVMKVL 192

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 16130526  117 AMGGqIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAV 155
Cdd:PRK08457 193 IQYG-INPNRLSFSSYGSNNPIAPNDSLENRLKNNRVEI 230
motB PRK08944
flagellar motor protein MotB; Reviewed
 90-157 4.66e-08

flagellar motor protein MotB; Reviewed


Pssm-ID: 236356 [Multi-domain]  Cd Length: 302  Bit Score: 50.78  E-value: 4.66e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16130526   90 GHTDNYGEDS--Y--NEGLSLKRANVVADAWAMGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVI 157
Cdd:PRK08944 216 GHTDNVPISSelYrsNWDLSSARAVAVAHELLKVKGFDPQRLKVVGMADTQPLVPNDTAENRARNRRVEIII 287
motB PRK07734
flagellar motor protein MotB; Reviewed
 52-157 7.48e-08

flagellar motor protein MotB; Reviewed


Pssm-ID: 236080 [Multi-domain]  Cd Length: 259  Bit Score: 50.13  E-value: 7.48e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130526   52 DAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNY----GEDSYNEGLSLKRA-NVvadawaMGGQIPRSN 126
Cdd:PRK07734 142 DNILFDSGKADVRLEDLPLAKEISNLLVSNPPRNITISGHTDNVpianAQFASNWELSVMRAvNF------MQVLLENKE 215

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 16130526  127 L-----TTQGLGKKYPIASNKTAQGRAENRRVAVVI 157
Cdd:PRK07734 216 LdpekfSAKGYGEYKPIASNDTAEGRAKNRRVEVLI 251
PRK09039 PRK09039
peptidoglycan -binding protein;
54-153 2.05e-07

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 49.19  E-value: 2.05e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130526   54 ILFAKNDYKLLPESQQQIqtmaAKLASTGLTHA-----------RMDGHTDN---YGEDSY--NEGLSLKRA-NVVADAW 116
Cdd:PRK09039 226 VLFPTGSAELNPEGQAEI----AKLAAALIELAkeippeinwvlRVDGHTDNvplSGTGRFrdNWELSSARAiSVVKFLI 301

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 16130526  117 AMGgqIPRSNLTTQGLGKKYPIASNKTAQGRAENRRV 153
Cdd:PRK09039 302 ALG--VPADRLAAAGFGEFQPLDPGDTPEARARNRRI 336
PRK07033 PRK07033
DotU family type VI secretion system protein;
55-157 1.11e-06

DotU family type VI secretion system protein;


Pssm-ID: 180801 [Multi-domain]  Cd Length: 427  Bit Score: 46.97  E-value: 1.11e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130526   55 LFAKNDYKLLPESQQQIQTMAAKLASTGlTHARMDGHTDNYGEDSY----NEGLSLKRANVVADAwaMGGQIPR-SNLTT 129
Cdd:PRK07033 317 LFASASTSVRDRYQPVLARVADALNQVK-GNVLVTGYSDNVPIRTArfpsNWELSQARAQAVRAL--LAARLGQpERVTA 393

                         90       100
                 ....*....|....*....|....*...
gi 16130526  130 QGLGKKYPIASNKTAQGRAENRRVAVVI 157
Cdd:PRK07033 394 EGRGDSDPVAPNDSAENRARNRRVEITL 421
PRK06925 PRK06925
flagellar motor protein MotB;
48-160 4.07e-06

flagellar motor protein MotB;


Pssm-ID: 235887 [Multi-domain]  Cd Length: 230  Bit Score: 44.75  E-value: 4.07e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130526   48 LGLSDAILFAKNDYKLLPESQQQIQTMAAkLASTGLTHARMDGHTDNYGEDSY----NEGLSLKRANVVADAWAMGGQIP 123
Cdd:PRK06925 114 LVLQEAVLFETGEADILKQAEPFLHKIGV-LLSTIPNDIKVEGHTDSRPISTYrypsNWELSAARASSVIRYFTSKEKLD 192

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 16130526  124 RSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITTP 160
Cdd:PRK06925 193 SSRFIAVGYADTKPVVPNTTEENMQENRRVEIVISDP 229
PRK07034 PRK07034
hypothetical protein; Provisional
 90-156 1.06e-05

hypothetical protein; Provisional


Pssm-ID: 168775 [Multi-domain]  Cd Length: 536  Bit Score: 44.39  E-value: 1.06e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16130526   90 GHTDN--YGEDSYNEGLSLK--RANVVADAWAMGGQIPRSN---LTTQGLGKKYPIASNKTAQGRAENRRVAVV 156
Cdd:PRK07034 433 GHTDNkpFRSTSGNNNLKLSaaRASVVADKLRESTQINETHqreISAIGRGESDPLADNATEEGRKRNRRVDIL 506
PRK10802 PRK10802
peptidoglycan-associated lipoprotein Pal;
54-156 2.29e-03

peptidoglycan-associated lipoprotein Pal;


Pssm-ID: 182744 [Multi-domain]  Cd Length: 173  Bit Score: 36.77  E-value: 2.29e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130526   54 ILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNYGEDSYNEGLSLKRANVVaDAWAMGGQIPRSNLTTQGLG 133
Cdd:PRK10802  71 VYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNIALGERRANAV-KMYLQGKGVSADQISIVSYG 149

                         90       100
                 ....*....|....*....|...
gi 16130526  134 KKYPIASNKTAQGRAENRRVAVV 156
Cdd:PRK10802 150 KEKPAVLGHDEAAYAKNRRAVLV 172
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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