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Conserved domains on  [gi|16130530|ref|NP_417100|]
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30S ribosomal subunit protein S16 [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

30S ribosomal protein S16( domain architecture ID 10000742)

30S ribosomal protein S16 is a ribosomal protein that may have a cation-dependent endonuclease activity

Gene Ontology:  GO:0003735|GO:0006412
PubMed:  24524803

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RpsP COG0228
Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 ...
 1-76 3.21e-43

Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 is part of the Pathway/BioSystem: Ribosome 30S subunit


:

Pssm-ID: 439998  Cd Length: 76  Bit Score: 134.40  E-value: 3.21e-43
                       10        20        30        40        50        60        70
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16130530  1 MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIASEKEegTRLDLDRIAHWVGQGATISDRVAALIK 76
Cdd:COG0228  1 MVKIRLARGGAKKRPFYRIVVADSRSPRDGRFIERIGFYNPLTNPAR--IKLDEERAQYWLSKGAQPTDTVAKLLK 74
 
Name Accession Description Interval E-value
RpsP COG0228
Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 ...
 1-76 3.21e-43

Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439998  Cd Length: 76  Bit Score: 134.40  E-value: 3.21e-43
                       10        20        30        40        50        60        70
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16130530  1 MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIASEKEegTRLDLDRIAHWVGQGATISDRVAALIK 76
Cdd:COG0228  1 MVKIRLARGGAKKRPFYRIVVADSRSPRDGRFIERIGFYNPLTNPAR--IKLDEERAQYWLSKGAQPTDTVAKLLK 74
Ribosomal_S16 pfam00886
Ribosomal protein S16;
8-68 2.39e-32

Ribosomal protein S16;


Pssm-ID: 459981  Cd Length: 61  Bit Score: 106.30  E-value: 2.39e-32
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16130530    8 RHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATIS 68
Cdd:pfam00886  1 RMGRKKRPFYRIVVADSRSPRDGRFIEELGTYNPLAEPGEPRVKLDEERIKYWLGVGAQPT 61
S16 TIGR00002
ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein ...
 2-78 4.99e-31

ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272848  Cd Length: 78  Bit Score: 103.48  E-value: 4.99e-31
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16130530    2 VTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIASEKEegTRLDLDRIAHWVGQGATISDRVAALIKEV 78
Cdd:TIGR00002  1 VKIRLKRGGRKKRPFYRIVVADSRSRRDGRYIEELGFYNPITKEDL--VKLNVERIKHWLSKGAQPTDTVRKLLKKA 75
rpsP PRK14521
30S ribosomal protein S16; Provisional
 2-77 4.57e-18

30S ribosomal protein S16; Provisional


Pssm-ID: 237744 [Multi-domain]  Cd Length: 186  Bit Score: 73.66  E-value: 4.57e-18
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16130530    2 VTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPiaSEKEEGTRLDLDRIAHWVGQGATISDRVAALIKE 77
Cdd:PRK14521   3 VKIRLQRHGRKGKAFYWIVAADSRAPRDGKFIEKIGTYNP--NTNPATVDLNFDRAVYWLMNGAQPTDTARNILSY 76
 
Name Accession Description Interval E-value
RpsP COG0228
Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 ...
 1-76 3.21e-43

Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439998  Cd Length: 76  Bit Score: 134.40  E-value: 3.21e-43
                       10        20        30        40        50        60        70
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16130530  1 MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIASEKEegTRLDLDRIAHWVGQGATISDRVAALIK 76
Cdd:COG0228  1 MVKIRLARGGAKKRPFYRIVVADSRSPRDGRFIERIGFYNPLTNPAR--IKLDEERAQYWLSKGAQPTDTVAKLLK 74
Ribosomal_S16 pfam00886
Ribosomal protein S16;
8-68 2.39e-32

Ribosomal protein S16;


Pssm-ID: 459981  Cd Length: 61  Bit Score: 106.30  E-value: 2.39e-32
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16130530    8 RHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATIS 68
Cdd:pfam00886  1 RMGRKKRPFYRIVVADSRSPRDGRFIEELGTYNPLAEPGEPRVKLDEERIKYWLGVGAQPT 61
S16 TIGR00002
ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein ...
 2-78 4.99e-31

ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272848  Cd Length: 78  Bit Score: 103.48  E-value: 4.99e-31
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16130530    2 VTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIASEKEegTRLDLDRIAHWVGQGATISDRVAALIKEV 78
Cdd:TIGR00002  1 VKIRLKRGGRKKRPFYRIVVADSRSRRDGRYIEELGFYNPITKEDL--VKLNVERIKHWLSKGAQPTDTVRKLLKKA 75
rpsP PRK14521
30S ribosomal protein S16; Provisional
 2-77 4.57e-18

30S ribosomal protein S16; Provisional


Pssm-ID: 237744 [Multi-domain]  Cd Length: 186  Bit Score: 73.66  E-value: 4.57e-18
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16130530    2 VTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPiaSEKEEGTRLDLDRIAHWVGQGATISDRVAALIKE 77
Cdd:PRK14521   3 VKIRLQRHGRKGKAFYWIVAADSRAPRDGKFIEKIGTYNP--NTNPATVDLNFDRAVYWLMNGAQPTDTARNILSY 76
rpsP PRK14520
30S ribosomal protein S16; Provisional
 2-76 5.00e-18

30S ribosomal protein S16; Provisional


Pssm-ID: 184724 [Multi-domain]  Cd Length: 155  Bit Score: 72.80  E-value: 5.00e-18
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16130530    2 VTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPiaseKEEGTRLDLD--RIAHWVGQGATISDRVAALIK 76
Cdd:PRK14520   3 VKIKLKRLGKIRNPQYRIVVADSRTKRDGRAIEEIGRYHP----KEEPSLIEIDseRAQYWLSVGAQPTEPVLALLK 75
rps16 CHL00005
ribosomal protein S16
 1-79 9.48e-18

ribosomal protein S16


Pssm-ID: 176950  Cd Length: 82  Bit Score: 70.05  E-value: 9.48e-18
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16130530   1 MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIASEkeegTRLDLDRIAHWVGQGATISDRVAALIKEVN 79
Cdd:CHL00005  1 MVKLRLKRCGRKQQAVYRIVAIDVRSRREGRDLEKVGFYDPIKNQ----TYLNVPAILYFLEKGAQPTETVYDILKKAE 75
rpsP PRK14522
30S ribosomal protein S16; Provisional
 4-77 4.45e-12

30S ribosomal protein S16; Provisional


Pssm-ID: 172988 [Multi-domain]  Cd Length: 116  Bit Score: 56.54  E-value: 4.45e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16130530    4 IRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPiasEKEEGTRLDLDRIAHWVGQGATISDRVAALIKE 77
Cdd:PRK14522   5 IRLRQQGRRNHVVYRLVLADVESPRDGKYIELLGWYDP---HSEQNYQLKSERIFYWLNQGAELTEKAGALVKQ 75
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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