|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10952 |
PRK10952 |
proline/glycine betaine ABC transporter permease ProW; |
1-354 |
0e+00 |
|
proline/glycine betaine ABC transporter permease ProW;
Pssm-ID: 236805 Cd Length: 355 Bit Score: 685.28 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 1 MADQNNPWDTTPAADSAAQSADAWGTPTTAPTDGGGADWLTSTPAPNVEHFNILDPFHKTLIPLDSWVTEGIDWVVTHFR 80
Cdd:PRK10952 2 MADQNNPWDTTPAADSAAQSADAWGTPAGAPTDGGGADWLNSAPAPAPEHFNILDPFHKTLIPLDSWVTEGIDWVVTHFR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 81 PVFQGVRVPVDYILNGFQQLLLGMPAPVAIIVFALIAWQISGVGMGVATLVSLIAIGAIGAWSQAMVTLALVLTALLFCI 160
Cdd:PRK10952 82 PVFQGIRVPVDYILNGFQQLLLGMPAPVAIIVFALIAWQISGVGMGVATLVSLIAIGAIGAWSQAMVTLALVLTALLFCI 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 161 VIGLPLGIWLARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALPPIIRLTILGINQVPADLIEA 240
Cdd:PRK10952 162 VIGLPLGIWLARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALPPIVRLTILGINQVPADLIEA 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 241 SRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQMVLRGIGRLDMGLATVGGVGIVILAIIL 320
Cdd:PRK10952 242 SRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQMVLRGIGRLDMGLATVGGVGIVILAIIL 321
|
330 340 350
....*....|....*....|....*....|....
gi 16130592 321 DRLTQAVGRDSRSRGNRRWYTTGPVGLLTRPFIK 354
Cdd:PRK10952 322 DRLTQAVGRDSRSRGNRRWYTTGPVGLLTRPFIK 355
|
|
| ProW |
COG4176 |
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ... |
54-328 |
9.25e-140 |
|
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443335 Cd Length: 275 Bit Score: 397.54 E-value: 9.25e-140
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 54 LDPFHKTLIPLDSWVTEGIDWVVTHFRPVFQGVRVPVDYILNGFQQLLLGMPAPVAIIVFALIAWQISGVGMGVATLVSL 133
Cdd:COG4176 1 MDEPEDPKIPLGDWVDAAVDWLTDNFGGFFDAISDVLEGLLDGLEDLLLALPWWVVILLVAALAWRLRGWRLALFTALGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 134 IAIGAIGAWSQAMVTLALVLTALLFCIVIGLPLGIWLARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVV 213
Cdd:COG4176 81 LLIGNLGLWEEAMQTLALVLVAVLIALLIGIPLGILAARSDRVSRIVRPVLDFMQTMPAFVYLIPAVMLFGIGKVPGVIA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 214 TIIFALPPIIRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQM 293
Cdd:COG4176 161 TVIFALPPAIRLTNLGIRQVPKELVEAADAFGATPWQLLFKVQLPLALPTIMAGVNQTIMLALSMVVIASMIGAGGLGQE 240
|
250 260 270
....*....|....*....|....*....|....*
gi 16130592 294 VLRGIGRLDMGLATVGGVGIVILAIILDRLTQAVG 328
Cdd:COG4176 241 VLRALQRLDIGLGFEAGLAIVILAIILDRITQALG 275
|
|
| ABC_choXWV_perm |
TIGR03416 |
choline ABC transporter, permease protein; |
62-324 |
1.31e-83 |
|
choline ABC transporter, permease protein;
Pssm-ID: 188318 Cd Length: 267 Bit Score: 254.58 E-value: 1.31e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 62 IPLDSWVTEGIDWVVTHFRPVFQGVRVPVDYILNGFQQLLLGMPAPVAIIVFALIAWQIS-GVGMGVATLVSLIAIGAIG 140
Cdd:TIGR03416 4 IPIGAWAKSFVDWLTDNGAFFFDALAAVLESMIDGLLDLLQAPPPLLLIAIFAALAWWLQrSWSLALFVLLGLLLIINQG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 141 AWSQAMVTLALVLTALLFCIVIGLPLGIWLARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALP 220
Cdd:TIGR03416 84 YWKETTETLALVLSATVVCMVIGVPLGIAAAHRPWLYAAMRPVLDLMQTLPTFVYLIPALVLFGLGMVPGLIATVIFAIP 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 221 PIIRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQMVLRGIGR 300
Cdd:TIGR03416 164 APIRLTHLGISSVPQELVEAGEAFGATPSQLLWKVELPYALPQIMAGLTQTIMLSLSMVVIAALVGADGLGVPVVRALNT 243
|
250 260
....*....|....*....|....
gi 16130592 301 LDMGLATVGGVGIVILAIILDRLT 324
Cdd:TIGR03416 244 VNIALGFEAGLAIVVLAIVLDRMF 267
|
|
| OpuBB |
COG1174 |
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ... |
160-337 |
2.21e-46 |
|
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440787 [Multi-domain] Cd Length: 212 Bit Score: 156.75 E-value: 2.21e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 160 IVIGLPLGIWLARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALPPIIRLTILGINQVPADLIE 239
Cdd:COG1174 35 LLIAVPLGILITRRRRLAGLVLGVANILQTIPSLALLALLIPLLGIGPAPAIIALVLYALLPILRNTYTGLRSVDPAVVE 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 240 ASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQMVLRGIGRLDMGLATVGGVGIVILAII 319
Cdd:COG1174 115 AARGMGMTPWQRLWRVELPLALPVILAGIRTAAVQNIGTATLAALIGAGGLGDLIFDGLQLNNTALILAGAILVALLALL 194
|
170
....*....|....*...
gi 16130592 320 LDRLTQAVGRDSRSRGNR 337
Cdd:COG1174 195 VDLLLALLERLLTPRGLR 212
|
|
| TauC |
COG0600 |
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ... |
106-329 |
4.94e-36 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440365 [Multi-domain] Cd Length: 254 Bit Score: 131.04 E-value: 4.94e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 106 APVAIIVFALIAWQISGVGMGV------------ATLVSLIAIGAIgaWSQAMVTLALVLTALLFCIVIGLPLGIWLARS 173
Cdd:COG0600 14 LPLLSLALLLALWELAARLGLVppfllpspsavlAALVELLASGEL--WEHLLASLLRVLLGFALAALLGVPLGLLLGLS 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 174 PRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALPPIIRLTILGINQVPADLIEASRSFGASPRQMLF 253
Cdd:COG0600 92 RLLRRLLDPLLVFLRPIPPLALAPLLILWFGIGEASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILR 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16130592 254 KVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVG-GLGQMVLRGIGRLDMGLATVGGVGIVILAIILDRLTQAVGR 329
Cdd:COG0600 172 KVVLPAALPYIFTGLRIALGLAWIGLVVAELLGASsGLGYLILDARQLLDTDLVFAAILVIGLLGLLLDLLLRLLER 248
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
158-320 |
2.77e-18 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 81.56 E-value: 2.77e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 158 FCIVIGLPLGIWLARS-PRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNV---------PGVVVTIIFALPPIIRLTI 227
Cdd:cd06261 14 LALVLGLLLGIILARKrGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGwgilpglglPALILALLLIAPFARLIRR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 228 LGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQMVLRGIGRLDMGLAT 307
Cdd:cd06261 94 AALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTGLLLIFAILFPG 173
|
170
....*....|...
gi 16130592 308 VGGVGIVILAIIL 320
Cdd:cd06261 174 DLGVAAAVALILL 186
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
163-320 |
4.18e-18 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 80.81 E-value: 4.18e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 163 GLPLGIWLARSP--RAAKIIRPLLDAMQTTPAFVYLVPIVML-----FGIGNVPGVVVTIIFALPPIIRLTILGINQVPA 235
Cdd:pfam00528 1 GIPLGIIAALRRgrRLDRLLRPLIDLLQALPSFVLAILLVVIailsiLGHGILPAIILALLGWAGYARLIRRAALRSLPS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 236 DLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMI-AVGGLGQMVLRGIGRLDMGLATVGGVGIV 314
Cdd:pfam00528 81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgSWPGLGLLLIEAILGYDYPEIQGPVLAAA 160
|
....*.
gi 16130592 315 ILAIIL 320
Cdd:pfam00528 161 LILLLL 166
|
|
| PotC |
COG1177 |
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ... |
158-329 |
4.19e-13 |
|
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];
Pssm-ID: 440790 [Multi-domain] Cd Length: 262 Bit Score: 68.21 E-value: 4.19e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 158 FCIVIGLPLGIWLAR-SPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTII-----FALPPIIRLTILGIN 231
Cdd:COG1177 76 LATVLGTPAALALARyRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGLIlahvvFTLPFVVLVVLARLQ 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 232 QVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGG-------LGQMVLRGIGRLDMG 304
Cdd:COG1177 156 GFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGvttlpvyIYSMIRRGISPEINA 235
|
170 180
....*....|....*....|....*
gi 16130592 305 LATVGGVGIVILAIILDRLTQAVGR 329
Cdd:COG1177 236 LSTLLILLSLLLLLLAERLRRRGER 260
|
|
| MetP |
COG2011 |
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ... |
158-328 |
1.19e-12 |
|
ABC-type methionine transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 441614 Cd Length: 220 Bit Score: 66.23 E-value: 1.19e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 158 FCIVIGLPLGIWL--------ARSPRAAKIIRPLLDAMQTTPAFVYLVPIV----MLFG--IGNVPGVVVTIIFALPPII 223
Cdd:COG2011 29 IAVLLGLPLGVLLvltrpgglLPNPVLYRVLGVIVNIFRSIPFIILLVALIpltrLIVGtsIGTTAAIVPLTIAAIPFFA 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 224 RLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQMVLR-GIGRLD 302
Cdd:COG2011 109 RLVENALREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILGLTVTLISLIGYSAMAGAVGGGGLGDLAIRyGYQRFD 188
|
170 180
....*....|....*....|....*.
gi 16130592 303 MGLATVggvgIVILAIILDRLTQAVG 328
Cdd:COG2011 189 TDVMLV----TVVILIVLVQIIQFLG 210
|
|
| PRK10160 |
PRK10160 |
taurine ABC transporter permease TauC; |
160-329 |
3.43e-12 |
|
taurine ABC transporter permease TauC;
Pssm-ID: 182276 Cd Length: 275 Bit Score: 65.96 E-value: 3.43e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 160 IVIGLPLGIWLARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALPPIIRLTILGINQVPADLIE 239
Cdd:PRK10160 95 VVIGIPVGIAMGLSPTVRGILDPLIELYRPVPPLAYLPLMVIWFGIGETSKILLIYLAIFAPVAMSALAGVKSAQQVRIR 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 240 ASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVG-GLGQMVLRGIGRLDMGLATVGGVGIVILAI 318
Cdd:PRK10160 175 AAQSLGASRAQVLWFVILPGALPEILTGLRIGLGVGWSTLVAAELIAATrGLGFMVQSAGEFLATDVVLAGIAVIAIIAF 254
|
170
....*....|.
gi 16130592 319 ILDRLTQAVGR 329
Cdd:PRK10160 255 LLELGLRALQR 265
|
|
| PotB |
COG1176 |
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ... |
158-320 |
2.43e-10 |
|
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];
Pssm-ID: 440789 [Multi-domain] Cd Length: 287 Bit Score: 60.55 E-value: 2.43e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 158 FCIVIGLPLGIWLARSPRAAkiiRPLLDAMQTTPAFV-YLV---------------------------PIVMLFgigNVP 209
Cdd:COG1176 82 ICLLLGYPIAYFLARAPPRW---RNLLLLLVILPFWTsFLVrtyawivllgrngllnslllalglidePLRLLY---TEF 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 210 GVVVTIIFALPPIIRLTILG-INQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIavG 288
Cdd:COG1176 156 AVVIGLVYVYLPFMVLPLYAaLEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALL--G 233
|
170 180 190
....*....|....*....|....*....|....*...
gi 16130592 289 GLGQMVL------RGIGRLDMGLATVggVGIVILAIIL 320
Cdd:COG1176 234 GGKVLMIgnliyqQFLSALNWPLAAA--LAVVLLLIVL 269
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
158-353 |
6.63e-10 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 60.17 E-value: 6.63e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 158 FCIVIGLPLGIWLARSP-RAAKIIRPLLDAMQTTPAFVYLVPIVMLFG-------------------IGNVPGVV-VTII 216
Cdd:COG1178 69 LSLLLGVPLAWLLARTDfPGRRLLRWLLLLPLALPPYVVALAWIALFGpngllntllralfgleppdIYGLGGIIlVLVL 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 217 FALPPIIRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIavGGLGQMVLR 296
Cdd:COG1178 149 FNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVL--GGGYTTLTT 226
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16130592 297 GI-----GRLDMGLATVGGV---GIVILAIILDRLTQAVGRDSRSRGNRRWYTTGPVGLLTRPFI 353
Cdd:COG1178 227 AIyqawlGDFDLGAAAALALvllLLVLLLLLLERRLRRRRRYATVGGRARRPRRVKLGRWRWLAL 291
|
|
| PRK10782 |
PRK10782 |
D-methionine ABC transporter permease MetI; |
158-293 |
3.87e-09 |
|
D-methionine ABC transporter permease MetI;
Pssm-ID: 182726 Cd Length: 217 Bit Score: 56.28 E-value: 3.87e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 158 FCIVIGLPLGIWL--------ARSPRAAKIIRPLLDAMQTTPAFVYLVPIV----MLFG--IGNVPGVVVTIIFALPPII 223
Cdd:PRK10782 26 FGFVIGLPVGVLLyvtrpgqiIANAKLYRTLSALVNIFRSIPFIILLVWMIpftrVIVGtsIGLQAAIVPLTVGAAPFIA 105
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 224 RLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQM 293
Cdd:PRK10782 106 RMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQI 175
|
|
| PhnE |
TIGR01097 |
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ... |
158-327 |
9.11e-09 |
|
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]
Pssm-ID: 273441 [Multi-domain] Cd Length: 250 Bit Score: 55.63 E-value: 9.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 158 FCIVIGLPLGIWLAR----SPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALPPIIRLTILGINQV 233
Cdd:TIGR01097 73 LAAVLAVPLALLAARnitpSPWLYGLARLLLNFLRAIPELVWALIFVAAVGLGPFAGVLALAFHTVGFLGKLFAEAIEEV 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 234 PADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQMVLRGIGRLDMGLATVGGVGI 313
Cdd:TIGR01097 153 DPGPVEALRATGASKLQVIRYGVLPQVLPQFLSYTLYRFEINVRAAAVLGLVGAGGIGLELDTAIGLFDYDEVSAIILVI 232
|
170
....*....|....
gi 16130592 314 VILAIILDRLTQAV 327
Cdd:TIGR01097 233 LVVVVIIDLISARL 246
|
|
| COG4986 |
COG4986 |
ABC-type anion transport system, duplicated permease component [Inorganic ion transport and ... |
167-320 |
9.81e-09 |
|
ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism];
Pssm-ID: 444010 [Multi-domain] Cd Length: 576 Bit Score: 56.77 E-value: 9.81e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 167 GIWLARSPRAAKIIRPLLDAMQTTPAFVYLvPIVMLFGI----GNVPGVVVTIIFALppiirLT------ILGINQ---- 232
Cdd:COG4986 85 ATLAAKSRRAEKILIPLLDILQSVPVLGFL-SFTVTFFIalfpGSLLGVELAAIFAI-----FTsqawnmAFSFYQslrt 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 233 VPADLIEASRSFGASPRQMLFKVQLPLAMPtimaGVNQTLMLALS----MVVIASMIAVGGLgQMVLRGIGRLdMGLAT- 307
Cdd:COG4986 159 VPRDLDEAARIFRLSGWQRFWRLELPFAMP----GLVWNSMMSMSggwfFLVASEAISVGNQ-DIRLPGIGSY-LALAIa 232
|
170
....*....|....*.
gi 16130592 308 ---VGGVGIVILAIIL 320
Cdd:COG4986 233 qgdLGAIGWAILAMLV 248
|
|
| ssuC |
PRK11365 |
aliphatic sulfonate ABC transporter permease SsuC; |
162-344 |
1.55e-08 |
|
aliphatic sulfonate ABC transporter permease SsuC;
Pssm-ID: 183100 Cd Length: 263 Bit Score: 54.94 E-value: 1.55e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 162 IGLPLGIWLARSPRAAKIIRPLLDAMQTTPAFVyLVPIVML-FGIGNVPGVVVTIIFALPPIIRLTILGINQVPADLIEA 240
Cdd:PRK11365 79 LGLILGLISGLSRWGERLLDTSIQMLRNVPHLA-LIPLVILwFGIDESAKIFLVALGTLFPIYINTWHGIRNIDRGLVEM 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 241 SRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGlgqmvlrGIGRLDMGLATVGGVGIVILAIIL 320
Cdd:PRK11365 158 ARSYGLSGIPLFIHVILPGALPSIMVGVRFALGLMWLTLIVAETISANS-------GIGYLAMNAREFLQTDVVVVAIIL 230
|
170 180
....*....|....*....|....
gi 16130592 321 DRLTQAVGRDSRSRGNRRWYTTGP 344
Cdd:PRK11365 231 YALLGKLADVSAQLLERLWLRWNP 254
|
|
| 3a0107s02c |
TIGR00974 |
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of ... |
159-268 |
2.11e-08 |
|
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]
Pssm-ID: 273373 Cd Length: 271 Bit Score: 54.55 E-value: 2.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 159 CIVIGLPLG----IWL---ARSPRAAKIIRPLLDAMQTTPAFVY-------LVPIVMLFGIGNVPGVVVTIIFALPPIIR 224
Cdd:TIGR00974 66 AIVIAVPLGigaaIYLaeyANGSRFTKIIRFAVDILAGVPSIVVglfgygfFVLTYLGGGFSLLAGALALALLILPVIIR 145
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 16130592 225 LTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGV 268
Cdd:TIGR00974 146 TTEEALKAVPKDLREASLALGATKWQTIFKVVLPAALPGILTGI 189
|
|
| PRK15050 |
PRK15050 |
2-aminoethylphosphonate transport system permease PhnU; Provisional |
198-276 |
2.72e-08 |
|
2-aminoethylphosphonate transport system permease PhnU; Provisional
Pssm-ID: 237888 [Multi-domain] Cd Length: 296 Bit Score: 54.62 E-value: 2.72e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16130592 198 PIVMLFGIGNVpgVVVTIIFALPPIIRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLAL 276
Cdd:PRK15050 154 PLDFLYSPGGV--ILAEITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTL 230
|
|
| PhnE |
COG3639 |
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport ... |
160-327 |
3.66e-07 |
|
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 442856 [Multi-domain] Cd Length: 244 Bit Score: 50.46 E-value: 3.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 160 IVIGLPLGIW----LARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALPPIIRLTILGINQVPA 235
Cdd:COG3639 68 AVLALPLAFLaarnLAPNPWVRLLARRLLNVLRAIPELVWALIFVAAVGLGPFAGVLALAIHTIGFLGKLFAEAIEEIDP 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 236 DLIEASRSFGASPRQMLFKVQLPLAMPTIMAgvnQTLM---LALSMVVIASMIAVGGLGQMVLRGIGRLDMGLATVGGVG 312
Cdd:COG3639 148 GPVEALRATGASRLQVIRYGVLPQVLPQFLS---YTLYrfeINIRAATVLGLVGAGGIGLLLNEAIRLFQYDEVAAILLV 224
|
170
....*....|....*
gi 16130592 313 IVILAIILDRLTQAV 327
Cdd:COG3639 225 ILVLVLLIDLLSARL 239
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
158-320 |
7.54e-07 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 50.54 E-value: 7.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 158 FCIVIGLPLGIWLARSP-RAAKIIRPLLDAMQTTPAFV----YLVPIVMLFGIGNVPG----VVVTIIFALPPIIRLTIL 228
Cdd:COG1178 353 LAVLLALLLAYLVRRRRgRLARLLDRLAMLPYAVPGIVlglgLLLLFNRPLPLLLYGTlailVLAYVVRFLPFALRSLEA 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 229 GINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVnqTLMLALSM--VVIASMIAVGG---LGQMVLRGIGRLDM 303
Cdd:COG1178 433 ALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAA--LLVFVTSMkeLSATLLLRPPGfetLAVLIYQLASSGRY 510
|
170
....*....|....*..
gi 16130592 304 GLATVGGVGIVILAIIL 320
Cdd:COG1178 511 GEAAALALLLVLVSLLP 527
|
|
| CysU |
COG0555 |
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ... |
158-277 |
1.02e-06 |
|
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440321 [Multi-domain] Cd Length: 268 Bit Score: 49.36 E-value: 1.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 158 FCIVIGLPLGIWLARSP-RAAKIIRPLLDAMQTTPAFVYLVPIVMLFG----IGN------------VPGVVVTIIF-AL 219
Cdd:COG0555 69 INLVFGLPLAWVLVRYRfPGKRLVDALVDLPFALPTAVAGIALLLLFGpngwLGQllaplgikvaftPLGIVLAQTFvSL 148
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 16130592 220 PPIIRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALS 277
Cdd:COG0555 149 PFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALG 206
|
|
| UgpA |
COG1175 |
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; |
229-320 |
4.27e-06 |
|
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440788 [Multi-domain] Cd Length: 298 Bit Score: 47.82 E-value: 4.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 229 GINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQ--------MVLRGIGR 300
Cdd:COG1175 187 GLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTGGGPGNstttlvlyIYQTAFQQ 266
|
90 100
....*....|....*....|
gi 16130592 301 LDMGLATVGGVGIVILAIIL 320
Cdd:COG1175 267 FDFGYASAIAVVLFLIILVL 286
|
|
| DppC |
COG1173 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
158-283 |
3.72e-05 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440786 [Multi-domain] Cd Length: 275 Bit Score: 44.72 E-value: 3.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 158 FCIVIGLPLGIWLARSPRAA-KIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALPPIIRLT---ILGINQv 233
Cdd:COG1173 91 IALVIGVLLGLLAGYFGGWVdAVLMRLVDVLLAFPSLLLAIALVAVLGPGLLNVILALGLTGWPGYARLVraqVLSLRE- 169
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 16130592 234 pADLIEASRSFGASPRQMLFKVQLPLAMPTIMagVNQTLMLALSMVVIAS 283
Cdd:COG1173 170 -REYVEAARALGASPLRIIFRHILPNVLPPLI--VQATLGIASAILAEAG 216
|
|
| potC |
PRK09500 |
spermidine/putrescine ABC transporter membrane protein; Reviewed |
175-283 |
1.59e-04 |
|
spermidine/putrescine ABC transporter membrane protein; Reviewed
Pssm-ID: 236542 [Multi-domain] Cd Length: 256 Bit Score: 42.66 E-value: 1.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 175 RAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVT-----IIFALPPIIrLTILG-INQVPADLIEASRSFGASP 248
Cdd:PRK09500 90 RGKKFVSGMLFVVMMSPDIVMAISLLVLFMLLGIQLGFWSllfahITFCLPFVV-VTVYSrLKGFDVRMLEAAKDLGASE 168
|
90 100 110
....*....|....*....|....*....|....*
gi 16130592 249 RQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIAS 283
Cdd:PRK09500 169 FTILRKIILPLALPAVAAGWLLSFTLSLDDVVVSS 203
|
|
| potB |
PRK09497 |
spermidine/putrescine ABC transporter membrane protein; Reviewed |
158-285 |
3.70e-04 |
|
spermidine/putrescine ABC transporter membrane protein; Reviewed
Pssm-ID: 181910 Cd Length: 285 Bit Score: 41.60 E-value: 3.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 158 FCIVIGLPLGIWLARSPRAakiIRPLLDAMQTTPAFV-----------------YLVPIVMLFGIGNVP--------GVV 212
Cdd:PRK09497 78 ACLVLGYPFAWFLAKLPHK---VRPLLLFLLIVPFWTnsliriyglkiflstkgYLNEFLLWLGVIDTPirimftesAVI 154
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16130592 213 VTIIFALPPIIRLTIL-GINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMI 285
Cdd:PRK09497 155 IGLVYILLPFMVLPLYsSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGMFYVSDLL 228
|
|
| COG4986 |
COG4986 |
ABC-type anion transport system, duplicated permease component [Inorganic ion transport and ... |
158-267 |
5.31e-04 |
|
ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism];
Pssm-ID: 444010 [Multi-domain] Cd Length: 576 Bit Score: 41.75 E-value: 5.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 158 FCIVIGLPLGIWLARSPRAAKIIRPLldaMQTTPAFvylvPIVMLFgignvPGVVVTII-FALPPIIRLTIL-------- 228
Cdd:COG4986 384 LASLIWVPVGVWIGLRPRLARRLQPV---AQFLASF----PANLLF-----PVAVLLIVrFGLNPNIWLSPLmilgtqwy 451
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 16130592 229 -------GINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAG 267
Cdd:COG4986 452 ilfnviaGASAIPNDLREAARNFGLRGWLWWRRLILPGIFPYYVTG 497
|
|
| UgpE |
COG0395 |
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ... |
158-266 |
8.30e-04 |
|
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440164 [Multi-domain] Cd Length: 282 Bit Score: 40.46 E-value: 8.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 158 FCIVIGLPLGIWLARSP-RAAKIIRPLLDAMQTTPAFVYLVPIVMLFG----IGNVPGVVVT-IIFALPPIIRLTILGIN 231
Cdd:COG0395 89 LSLLLSSLAAYALARFRfRGRKLLFLLILATLMIPGQVLLIPLYLLFRqlglLNTYWGLILPyLAFGLPFGIFLLRQFFR 168
|
90 100 110
....*....|....*....|....*....|....*
gi 16130592 232 QVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMA 266
Cdd:COG0395 169 SIPRELEEAARIDGASEFRIFWRIVLPLSKPALAT 203
|
|
| DppB |
COG0601 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
158-321 |
1.22e-03 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440366 [Multi-domain] Cd Length: 314 Bit Score: 40.05 E-value: 1.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 158 FCIVIGLPLGIWLARSP--RAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIG-----------NVPGVVVTIIFALPPIIR 224
Cdd:COG0601 108 LALLIGIPLGILAALRRgsWLDRLITVLALLGISIPSFWLGLLLILLFAVKlgwlpvsgrvsPWEDFLDALRHLILPALT 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 225 LTILG------------INQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVnqTLMLALSM---VVIASMIAVGG 289
Cdd:COG0601 188 LALGSlagiarltrssmLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPVVTVL--GLQLGGLLggaVVVETVFSWPG 265
|
170 180 190
....*....|....*....|....*....|....*.
gi 16130592 290 LGQMVLRGIGRLD----MGLATVGGVGIVILAIILD 321
Cdd:COG0601 266 LGRLLVDAILNRDypvvQGIVLLIAVLVVLVNLLVD 301
|
|
| HisM |
COG0765 |
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ... |
158-329 |
3.30e-03 |
|
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440528 [Multi-domain] Cd Length: 218 Bit Score: 38.52 E-value: 3.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 158 FCIVIGLPLGIWLA-----RSPRAAKIIRPLLDAMQTTPAFVYLvpIVMLFGIGNVpGVVVTIIFALppIIRLTIL---- 228
Cdd:COG0765 28 LAIVLGLVLGLLLAlarlsPNPVLRWLATAYVEFFRGTPLLVQL--FFIYFGLPLL-GIDLSPFVAA--VIALTLNsaay 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 229 -------GINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIM-AGVNQTLMLaLSMVVIASMIAVGGLGQMVLRGIGR 300
Cdd:COG0765 103 laeivraGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIILpPLGNEFISL-LKDTSLVSVIGVPELTRAAQQIASR 181
|
170 180 190
....*....|....*....|....*....|.
gi 16130592 301 LDMGLATVGGVGIV--ILAIILDRLTQAVGR 329
Cdd:COG0765 182 TFRPFEVYLVAALIylVLTLPLSLLARRLER 212
|
|
| modB |
PRK09421 |
molybdate ABC transporter permease subunit; |
216-268 |
4.47e-03 |
|
molybdate ABC transporter permease subunit;
Pssm-ID: 181841 Cd Length: 229 Bit Score: 37.98 E-value: 4.47e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 16130592 216 IFALPPIIRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGV 268
Cdd:PRK09421 101 VMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGT 153
|
|
| cysT |
CHL00187 |
sulfate transport protein; Provisional |
210-295 |
4.87e-03 |
|
sulfate transport protein; Provisional
Pssm-ID: 214388 [Multi-domain] Cd Length: 237 Bit Score: 38.07 E-value: 4.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130592 210 GVVVTIIFA-LPPIIRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLAL----SMVVIASM 284
Cdd:CHL00187 139 GVLLAMIFVsFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIgeygSIVIISSN 218
|
90
....*....|.
gi 16130592 285 IAVGGLGQMVL 295
Cdd:CHL00187 219 IPFKDLVASVL 229
|
|
| |
