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Conserved domains on  [gi|16130670|ref|NP_417243|]
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sulfite reductase, hemoprotein subunit [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

assimilatory sulfite reductase (NADPH) hemoprotein subunit( domain architecture ID 11486660)

assimilatory sulfite reductase (NADPH) hemoprotein subunit is a component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK13504 PRK13504
NADPH-dependent assimilatory sulfite reductase hemoprotein subunit;
5-569 0e+00

NADPH-dependent assimilatory sulfite reductase hemoprotein subunit;


:

Pssm-ID: 237402 [Multi-domain]  Cd Length: 569  Bit Score: 1129.51  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670    5 HPGPLVVEGKLTDAERMKHESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRC 84
Cdd:PRK13504   1 HPGPLAVEGKLSDVERIKLESNYLRGTIAEELNDGLTGGFSEDDFQLLKFHGSYQQDDRDIRAERAEQKLEPAYQFMLRC 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670   85 RLPGGVITTKQWQAIDKFAGENTiYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYES 164
Cdd:PRK13504  81 RLPGGVITPQQWLALDKLADEYG-NGTLRLTTRQTFQFHGILKKNLKPVIQTINSVLLDTLAACGDVNRNVMCTPNPYES 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670  165 QLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVAT---TDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIA 241
Cdd:PRK13504 160 RLHAEAYEWAKKISDHLLPRTRAYAEIWLDGEKVATfsgTEEEPIYGKTYLPRKFKIAVAVPPDNDVDVYANDLGFVAIA 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670  242 ENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKA 321
Cdd:PRK13504 240 ENGKLVGFNVLVGGGMGMTHGDKETYPRLADELGYVPPEDVLDVAEAVVTTQRDYGNRTDRKNARLKYTLERVGLDWFKA 319
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670  322 EVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIA 401
Cdd:PRK13504 320 EVERRAGKKLEPARPYEFTGRGDRLGWVEGIDGKWHLTLFIENGRIKDYPGRPLKTGLREIAKIHKGDFRLTANQNLIIA 399
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670  402 GVPESEKAKIEKIAKESGLMNAV--TPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGC 479
Cdd:PRK13504 400 NVPPSDKAKIEALLREYGLIDGVeeSPLRRNSMACVALPTCGLAMAEAERYLPSFIDRIEALLAKHGLSDEHIVIRMTGC 479
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670  480 PNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIR 559
Cdd:PRK13504 480 PNGCARPYLAEIGLVGKAPGRYNLYLGGSFNGTRLPKMYRENITEEEILATLDPLLGRWAKEREPGEGFGDFVIRAGIIR 559
                        570
                 ....*....|
gi 16130670  560 PVLDPARDLW 569
Cdd:PRK13504 560 EVLDGARDFH 569
 
Name Accession Description Interval E-value
PRK13504 PRK13504
NADPH-dependent assimilatory sulfite reductase hemoprotein subunit;
5-569 0e+00

NADPH-dependent assimilatory sulfite reductase hemoprotein subunit;


Pssm-ID: 237402 [Multi-domain]  Cd Length: 569  Bit Score: 1129.51  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670    5 HPGPLVVEGKLTDAERMKHESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRC 84
Cdd:PRK13504   1 HPGPLAVEGKLSDVERIKLESNYLRGTIAEELNDGLTGGFSEDDFQLLKFHGSYQQDDRDIRAERAEQKLEPAYQFMLRC 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670   85 RLPGGVITTKQWQAIDKFAGENTiYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYES 164
Cdd:PRK13504  81 RLPGGVITPQQWLALDKLADEYG-NGTLRLTTRQTFQFHGILKKNLKPVIQTINSVLLDTLAACGDVNRNVMCTPNPYES 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670  165 QLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVAT---TDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIA 241
Cdd:PRK13504 160 RLHAEAYEWAKKISDHLLPRTRAYAEIWLDGEKVATfsgTEEEPIYGKTYLPRKFKIAVAVPPDNDVDVYANDLGFVAIA 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670  242 ENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKA 321
Cdd:PRK13504 240 ENGKLVGFNVLVGGGMGMTHGDKETYPRLADELGYVPPEDVLDVAEAVVTTQRDYGNRTDRKNARLKYTLERVGLDWFKA 319
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670  322 EVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIA 401
Cdd:PRK13504 320 EVERRAGKKLEPARPYEFTGRGDRLGWVEGIDGKWHLTLFIENGRIKDYPGRPLKTGLREIAKIHKGDFRLTANQNLIIA 399
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670  402 GVPESEKAKIEKIAKESGLMNAV--TPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGC 479
Cdd:PRK13504 400 NVPPSDKAKIEALLREYGLIDGVeeSPLRRNSMACVALPTCGLAMAEAERYLPSFIDRIEALLAKHGLSDEHIVIRMTGC 479
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670  480 PNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIR 559
Cdd:PRK13504 480 PNGCARPYLAEIGLVGKAPGRYNLYLGGSFNGTRLPKMYRENITEEEILATLDPLLGRWAKEREPGEGFGDFVIRAGIIR 559
                        570
                 ....*....|
gi 16130670  560 PVLDPARDLW 569
Cdd:PRK13504 560 EVLDGARDFH 569
CysI TIGR02041
sulfite reductase (NADPH) hemoprotein, beta-component; Sulfite reductase (NADPH) catalyzes a ...
19-558 0e+00

sulfite reductase (NADPH) hemoprotein, beta-component; Sulfite reductase (NADPH) catalyzes a six electron reduction of sulfite to sulfide in prokaryotic organisms. It is a complex oligomeric enzyme composed of two different peptides with a subunit composition of alpha(8)-beta(4). The alpha component, encoded by cysJ, is a flavoprotein containing both FMN and FAD, while the beta component, encoded by cysI, is a siroheme, iron-sulfur protein. In Salmonella typhimurium and Escherichia coli, both the alpha and beta subunits of sulfite reductase are located in a unidirectional gene cluster along with phosphoadenosine phosphosulfate reductase, which catalyzes a two step reduction of PAPS to give free sulfite. In cyanobacteria and plant species, sulfite reductase ferredoxin (EC 1.8.7.1) catalyzes the reduction of sulfite to sulfide. [Central intermediary metabolism, Sulfur metabolism]


Pssm-ID: 273941 [Multi-domain]  Cd Length: 541  Bit Score: 1069.36  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670    19 ERMKHESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQA 98
Cdd:TIGR02041   1 ERIKEESNYLRGTILEDLADPLTGGFKGDNFQLIRFHGMYQQDDRDLRAERAEQKLEPRYAMMLRCRLPGGVITPKQWLA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670    99 IDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKIS 178
Cdd:TIGR02041  81 IDKFAREYTNYGSIRLTNRQTFQFHGILKKNLKPVHQMLHSVGLDSLATAGDVNRNVLCTSNPYESELHAEAYEWAKKIS 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670   179 EHLLPRTRAYAEIWLDQEKVATTDE-EPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGL 257
Cdd:TIGR02041 161 EHLLPRTRAYAEIWLDQEKVAGTEEvEPILGPTYLPRKFKTTVVIPPQNDVDVYANDLGFVAIAENGKLVGFNVLIGGGL 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670   258 SIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPY 337
Cdd:TIGR02041 241 SMEHGNKKTYPRLASEIGFIPPEHTLAVAEAVVTTQRDFGNRTDRKNARTKYTIERMGLDTFKAEVERRAGIKFEPARPY 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670   338 EFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKE 417
Cdd:TIGR02041 321 EFTGRGDRIGWVKGIDGNWHLTLFIENGRILDYPDKPLKTGLLEIAKIHKGDFRITANQNLIIAGVPEGGKAKIEKLARQ 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670   418 SGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKA 497
Cdd:TIGR02041 401 YGLINAVTALRENSMACVSFPTCPLAMAEAERYLPDFIDKLDNIMAKHGLSDEEIVLRVTGCPNGCGRAMLAEIGLVGKA 480
                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16130670   498 PGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGII 558
Cdd:TIGR02041 481 PGRYNLHLGGNRIGTRIPRLYKENITEPEILAELDELIGRWAKERKPGEGFGDFLIRAGII 541
CysI COG0155
Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism]; ...
15-566 0e+00

Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism]; Sulfite reductase, beta subunit (hemoprotein) is part of the Pathway/BioSystem: Cysteine biosynthesis


Pssm-ID: 439925 [Multi-domain]  Cd Length: 519  Bit Score: 582.08  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670  15 LTDAERMKHESNYLR-GTIAEDLNDGLTGGFKGDNF-LLIRFHGMYQQDDrdiraeraeqklePRHAMLLRCRLPGGVIT 92
Cdd:COG0155   1 LYKYERIKREDVRSRlGTFAEQLGRFLTGEISEDDFrLRLKFHGLYQQRD-------------PDGAFMLRVRIPGGVLT 67
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670  93 TKQWQAIDKFAGENTiYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQL-HAEAY 171
Cdd:COG0155  68 PEQLRALADIAREYG-RGYLHLTTRQNIQLHWILLEDLPEILRELAEVGLTTIGACGDVVRNVTASPLAGVDPDeLFDVR 146
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670 172 EWAKKISEHLLprtrayaeiwldqekvattdEEPILgqTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNL 251
Cdd:COG0155 147 PYAEAISQHLL--------------------GHPEY--TYLPRKFKIAFSGPPEDDADVEINDLGFIAVVKEDGLVGFNV 204
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670 252 LVGGGLSIEHgnkktyaRTASEFG-YLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERR-AGI 329
Cdd:COG0155 205 LVGGGLGRTP-------RLADVLGeFVPPEDLLDVAEAVVRVFRDYGDRDNRKKARLKYLVDDLGVEKFREEVEEEyLGF 277
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670 330 KFEPI-RPYEFTGRGDRIGWVKGI-DDNWHLTLFIENGRILDYParplKTGLLEIAKIH-KGDFRITANQNLIIAGVPES 406
Cdd:COG0155 278 PLEPApRPLPAFARWDHLGVHEQKqDGLYYVGLSVENGRITDEQ----LRALADLAERYgSGEIRLTPNQNLILADVPEE 353
                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670 407 EKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDnlmAKHG--VSDEHIVMRVTGCPNGCG 484
Cdd:COG0155 354 DLPALEAALRALGLATPPSGLRRDSIACPGLPTCKLAIAESKRLAPALADRLE---EDLDglHDDEPIRIRISGCPNSCG 430
                       490       500       510       520       530       540       550       560
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670 485 RAMLAEVGLVGKAP-GR---YNLHLGGNRIG-TRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGI-- 557
Cdd:COG0155 431 RHYIADIGLVGKAKkGVveaYQLYLGGGLGGdARLGRKYGPKVPADEIPDALERLLEAYLAEREEGESFGDFVRRVGIep 510

                ....*....
gi 16130670 558 IRPVLDPAR 566
Cdd:COG0155 511 LKELLYAAA 519
NIR_SIR pfam01077
Nitrite and sulphite reductase 4Fe-4S domain; Sulphite and nitrite reductases are vital in the ...
173-326 9.47e-48

Nitrite and sulphite reductase 4Fe-4S domain; Sulphite and nitrite reductases are vital in the biosynthetic assimilation of sulphur and nitrogen, respectfully. They are also both important for the dissimilation of oxidized anions for energy transduction.


Pssm-ID: 426031 [Multi-domain]  Cd Length: 153  Bit Score: 163.60  E-value: 9.47e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670   173 WAKKISEHLLPRTRAYAEIWLDQEKVATT---DEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGF 249
Cdd:pfam01077   1 GDNVRNVTLCPGAGLCPEELLDTRPLAKAiedEFEPDYGFPYLPRKFKIAVSGCPNNCVAAHANDIGFVGVWKDGGEIGF 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16130670   250 NLLVGGGLSIEHGNKKTYARtaseFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERR 326
Cdd:pfam01077  81 NILVGGGLGRTPGAAATLKV----VPFVPEEDVLEVIEAILEVYRDHGDRENRKKERLKYLIERLGLEKFREEVEER 153
 
Name Accession Description Interval E-value
PRK13504 PRK13504
NADPH-dependent assimilatory sulfite reductase hemoprotein subunit;
5-569 0e+00

NADPH-dependent assimilatory sulfite reductase hemoprotein subunit;


Pssm-ID: 237402 [Multi-domain]  Cd Length: 569  Bit Score: 1129.51  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670    5 HPGPLVVEGKLTDAERMKHESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRC 84
Cdd:PRK13504   1 HPGPLAVEGKLSDVERIKLESNYLRGTIAEELNDGLTGGFSEDDFQLLKFHGSYQQDDRDIRAERAEQKLEPAYQFMLRC 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670   85 RLPGGVITTKQWQAIDKFAGENTiYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYES 164
Cdd:PRK13504  81 RLPGGVITPQQWLALDKLADEYG-NGTLRLTTRQTFQFHGILKKNLKPVIQTINSVLLDTLAACGDVNRNVMCTPNPYES 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670  165 QLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVAT---TDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIA 241
Cdd:PRK13504 160 RLHAEAYEWAKKISDHLLPRTRAYAEIWLDGEKVATfsgTEEEPIYGKTYLPRKFKIAVAVPPDNDVDVYANDLGFVAIA 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670  242 ENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKA 321
Cdd:PRK13504 240 ENGKLVGFNVLVGGGMGMTHGDKETYPRLADELGYVPPEDVLDVAEAVVTTQRDYGNRTDRKNARLKYTLERVGLDWFKA 319
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670  322 EVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIA 401
Cdd:PRK13504 320 EVERRAGKKLEPARPYEFTGRGDRLGWVEGIDGKWHLTLFIENGRIKDYPGRPLKTGLREIAKIHKGDFRLTANQNLIIA 399
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670  402 GVPESEKAKIEKIAKESGLMNAV--TPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGC 479
Cdd:PRK13504 400 NVPPSDKAKIEALLREYGLIDGVeeSPLRRNSMACVALPTCGLAMAEAERYLPSFIDRIEALLAKHGLSDEHIVIRMTGC 479
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670  480 PNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIR 559
Cdd:PRK13504 480 PNGCARPYLAEIGLVGKAPGRYNLYLGGSFNGTRLPKMYRENITEEEILATLDPLLGRWAKEREPGEGFGDFVIRAGIIR 559
                        570
                 ....*....|
gi 16130670  560 PVLDPARDLW 569
Cdd:PRK13504 560 EVLDGARDFH 569
CysI TIGR02041
sulfite reductase (NADPH) hemoprotein, beta-component; Sulfite reductase (NADPH) catalyzes a ...
19-558 0e+00

sulfite reductase (NADPH) hemoprotein, beta-component; Sulfite reductase (NADPH) catalyzes a six electron reduction of sulfite to sulfide in prokaryotic organisms. It is a complex oligomeric enzyme composed of two different peptides with a subunit composition of alpha(8)-beta(4). The alpha component, encoded by cysJ, is a flavoprotein containing both FMN and FAD, while the beta component, encoded by cysI, is a siroheme, iron-sulfur protein. In Salmonella typhimurium and Escherichia coli, both the alpha and beta subunits of sulfite reductase are located in a unidirectional gene cluster along with phosphoadenosine phosphosulfate reductase, which catalyzes a two step reduction of PAPS to give free sulfite. In cyanobacteria and plant species, sulfite reductase ferredoxin (EC 1.8.7.1) catalyzes the reduction of sulfite to sulfide. [Central intermediary metabolism, Sulfur metabolism]


Pssm-ID: 273941 [Multi-domain]  Cd Length: 541  Bit Score: 1069.36  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670    19 ERMKHESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQA 98
Cdd:TIGR02041   1 ERIKEESNYLRGTILEDLADPLTGGFKGDNFQLIRFHGMYQQDDRDLRAERAEQKLEPRYAMMLRCRLPGGVITPKQWLA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670    99 IDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKIS 178
Cdd:TIGR02041  81 IDKFAREYTNYGSIRLTNRQTFQFHGILKKNLKPVHQMLHSVGLDSLATAGDVNRNVLCTSNPYESELHAEAYEWAKKIS 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670   179 EHLLPRTRAYAEIWLDQEKVATTDE-EPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGL 257
Cdd:TIGR02041 161 EHLLPRTRAYAEIWLDQEKVAGTEEvEPILGPTYLPRKFKTTVVIPPQNDVDVYANDLGFVAIAENGKLVGFNVLIGGGL 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670   258 SIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPY 337
Cdd:TIGR02041 241 SMEHGNKKTYPRLASEIGFIPPEHTLAVAEAVVTTQRDFGNRTDRKNARTKYTIERMGLDTFKAEVERRAGIKFEPARPY 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670   338 EFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKE 417
Cdd:TIGR02041 321 EFTGRGDRIGWVKGIDGNWHLTLFIENGRILDYPDKPLKTGLLEIAKIHKGDFRITANQNLIIAGVPEGGKAKIEKLARQ 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670   418 SGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKA 497
Cdd:TIGR02041 401 YGLINAVTALRENSMACVSFPTCPLAMAEAERYLPDFIDKLDNIMAKHGLSDEEIVLRVTGCPNGCGRAMLAEIGLVGKA 480
                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16130670   498 PGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGII 558
Cdd:TIGR02041 481 PGRYNLHLGGNRIGTRIPRLYKENITEPEILAELDELIGRWAKERKPGEGFGDFLIRAGII 541
CysI COG0155
Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism]; ...
15-566 0e+00

Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism]; Sulfite reductase, beta subunit (hemoprotein) is part of the Pathway/BioSystem: Cysteine biosynthesis


Pssm-ID: 439925 [Multi-domain]  Cd Length: 519  Bit Score: 582.08  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670  15 LTDAERMKHESNYLR-GTIAEDLNDGLTGGFKGDNF-LLIRFHGMYQQDDrdiraeraeqklePRHAMLLRCRLPGGVIT 92
Cdd:COG0155   1 LYKYERIKREDVRSRlGTFAEQLGRFLTGEISEDDFrLRLKFHGLYQQRD-------------PDGAFMLRVRIPGGVLT 67
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670  93 TKQWQAIDKFAGENTiYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQL-HAEAY 171
Cdd:COG0155  68 PEQLRALADIAREYG-RGYLHLTTRQNIQLHWILLEDLPEILRELAEVGLTTIGACGDVVRNVTASPLAGVDPDeLFDVR 146
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670 172 EWAKKISEHLLprtrayaeiwldqekvattdEEPILgqTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNL 251
Cdd:COG0155 147 PYAEAISQHLL--------------------GHPEY--TYLPRKFKIAFSGPPEDDADVEINDLGFIAVVKEDGLVGFNV 204
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670 252 LVGGGLSIEHgnkktyaRTASEFG-YLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERR-AGI 329
Cdd:COG0155 205 LVGGGLGRTP-------RLADVLGeFVPPEDLLDVAEAVVRVFRDYGDRDNRKKARLKYLVDDLGVEKFREEVEEEyLGF 277
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670 330 KFEPI-RPYEFTGRGDRIGWVKGI-DDNWHLTLFIENGRILDYParplKTGLLEIAKIH-KGDFRITANQNLIIAGVPES 406
Cdd:COG0155 278 PLEPApRPLPAFARWDHLGVHEQKqDGLYYVGLSVENGRITDEQ----LRALADLAERYgSGEIRLTPNQNLILADVPEE 353
                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670 407 EKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDnlmAKHG--VSDEHIVMRVTGCPNGCG 484
Cdd:COG0155 354 DLPALEAALRALGLATPPSGLRRDSIACPGLPTCKLAIAESKRLAPALADRLE---EDLDglHDDEPIRIRISGCPNSCG 430
                       490       500       510       520       530       540       550       560
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670 485 RAMLAEVGLVGKAP-GR---YNLHLGGNRIG-TRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGI-- 557
Cdd:COG0155 431 RHYIADIGLVGKAKkGVveaYQLYLGGGLGGdARLGRKYGPKVPADEIPDALERLLEAYLAEREEGESFGDFVRRVGIep 510

                ....*....
gi 16130670 558 IRPVLDPAR 566
Cdd:COG0155 511 LKELLYAAA 519
PLN00178 PLN00178
sulfite reductase
6-556 1.10e-154

sulfite reductase


Pssm-ID: 177773 [Multi-domain]  Cd Length: 623  Bit Score: 456.91  E-value: 1.10e-154
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670    6 PGPLVVEGKLTDAERMKHESNYLRGTIAEDLNDGLTGgFKGDNFLLIRFHGMYQQDDRDIRAERAEQkleprhaMLLRCR 85
Cdd:PLN00178  44 KKPTTEPPKRSKVEIIKENSNFLRHPLNEELATEAPN-INEDAVQLIKFHGSYQQDNREKRGGKAYQ-------FMLRTK 115
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670   86 LPGGVITTKQWQAIDKFAGENTIyGSIRLTNRQTFQFHGILKKNVKPVHQ-MLHSVGlDALATANDMNRNVLCTSNPYES 164
Cdd:PLN00178 116 QPAGKVPNRLYLVMDDLADEFGI-GTLRLTTRQTFQLHGVLKKDLKTVMSsIIKNMG-STLGACGDVNRNVLAPAAPFAR 193
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670  165 QLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDE--------------------EPILGQTYLPRKFKTTVVIPP 224
Cdd:PLN00178 194 KDYLFAQELAKNIAALLAPQSGAYYDIWVDGEKIMSAEPpevtkarndnshgtnfedspEPIYGTQFLPRKFKIAVTVPG 273
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670  225 QNDIDLHANDMNFVAIA-ENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRK 303
Cdd:PLN00178 274 DNSVDILTNDIGVVVVSdEAGEPQGYNIYVGGGMGRTHRNETTFPRLADPLGYVPKEDILYAVKAIVATQRDYGRRDDRK 353
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670  304 NAKTKYTLERVGVETFKAEVERRAGIKFEPIRP---YEFTgrgDRIGWVKGIDDNWHLTLFIENGRILDyparPLKTGLL 380
Cdd:PLN00178 354 QSRMKYLVHSWGIEKFRSVVEQYYGKKFEPFRElpeWEFK---SYLGWHEQGDGKLFYGVHVDNGRIKG----EAKKALR 426
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670  381 EIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNA--VTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNI 458
Cdd:PLN00178 427 EVIEKYNLPVRLTPNQNLILCDIRPAWKEPITAALAAAGLLEPeeVDPLNRTAMACPALPLCPLAITEAERGIPDILKRV 506
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670  459 DNLMAKHGVS-DEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGR 537
Cdd:PLN00178 507 RAMFNKVGLKyDESVVVRMTGCPNGCARPYMAELGFVGDGPNSYQIWLGGTPNQTRLAEPFMDKVKVDDLEKVLEPLFYM 586
                        570
                 ....*....|....*....
gi 16130670  538 WAKEREAGEGFGDFTVRAG 556
Cdd:PLN00178 587 WKQQRQEKESFGDFTNRVG 605
sir TIGR02042
ferredoxin-sulfite reductase; Distantly related to the iron-sulfur hemoprotein of sulfite ...
14-556 4.66e-145

ferredoxin-sulfite reductase; Distantly related to the iron-sulfur hemoprotein of sulfite reductase (NADPH) found in Proteobacteria and Eubacteria, sulfite reductase (ferredoxin) is a cyanobacterial and plant monomeric enzyme that also catalyzes the reduction of sulfite to sulfide. [Central intermediary metabolism, Sulfur metabolism]


Pssm-ID: 131097 [Multi-domain]  Cd Length: 577  Bit Score: 430.81  E-value: 4.66e-145
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670    14 KLTDAERMKHESNYLRGTIAEDLNDGLTGgFKGDNFLLIRFHGMYQQDDRDIRAERAEQKleprHAMLLRCRLPGGVITT 93
Cdd:TIGR02042   5 KRSKVEILKERSNFLREPLNEQLLEEATH-FNEDAVQILKFHGSYQQDNRDNRGKGQEKD----YQFMLRTKNPGGYVPP 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670    94 KQWQAIDKFAGENTIyGSIRLTNRQTFQFHGILKKNVKPV-HQMLHSVGlDALATANDMNRNVLCTSNPYESQLHAE-AY 171
Cdd:TIGR02042  80 QLYLTLDDLADEYGN-GTLRATTRQTFQLHGILKKNLKTViSTIVKNLG-STLGACGDLNRNVMAPPAPFRKRPEYEfAR 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670   172 EWAKKISEHLLPRTRAYAEIWLDQEKVATTDE---------------------EPILGQTYLPRKFKTTVVIPPQNDIDL 230
Cdd:TIGR02042 158 EYADNIADLLTPQSGAYYELWLDGEKVMSAEPdpevvaarndnshgtnfadspEPLYGTQYLPRKFKIAVTVPGDNSIDL 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670   231 HANDMNFVAIA-ENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKY 309
Cdd:TIGR02042 238 FTQDIGLVVVSnERGELEGFNIYVGGGMGRTHNKEETFARLADPLGYVPKEDIYYAVKAIVATQRDYGDRDDRRHARMKY 317
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670   310 TLERVGVETFKAEVERRAGIKFEPIR---PYEFTgrgDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIH 386
Cdd:TIGR02042 318 LISDWGIEKFREVVEQYFGKKIAPVRelpEFEYK---DYLGWHEQGDGKWFLGLHIDSGRVKDDGNWQLKKALREIVEKY 394
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670   387 KGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMN--AVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAK 464
Cdd:TIGR02042 395 NLPVRLTPNQNIILYDIQPEWKRAITTVLAQRGVLQpeAIDPLNRYAMACPALPTCGLAITESERAIPGILKRIRALLEK 474
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670   465 HGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREA 544
Cdd:TIGR02042 475 VGLPDEHFVVRMTGCPNGCARPYMAELGFVGSAPNSYQVWLGGSPNQTRLARPFIDKLKDGDLEKVLEPLFVHFKQSRQS 554
                         570
                  ....*....|..
gi 16130670   545 GEGFGDFTVRAG 556
Cdd:TIGR02042 555 GESFGDFCDRVG 566
NIR_SIR pfam01077
Nitrite and sulphite reductase 4Fe-4S domain; Sulphite and nitrite reductases are vital in the ...
173-326 9.47e-48

Nitrite and sulphite reductase 4Fe-4S domain; Sulphite and nitrite reductases are vital in the biosynthetic assimilation of sulphur and nitrogen, respectfully. They are also both important for the dissimilation of oxidized anions for energy transduction.


Pssm-ID: 426031 [Multi-domain]  Cd Length: 153  Bit Score: 163.60  E-value: 9.47e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670   173 WAKKISEHLLPRTRAYAEIWLDQEKVATT---DEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGF 249
Cdd:pfam01077   1 GDNVRNVTLCPGAGLCPEELLDTRPLAKAiedEFEPDYGFPYLPRKFKIAVSGCPNNCVAAHANDIGFVGVWKDGGEIGF 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16130670   250 NLLVGGGLSIEHGNKKTYARtaseFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERR 326
Cdd:pfam01077  81 NILVGGGLGRTPGAAATLKV----VPFVPEEDVLEVIEAILEVYRDHGDRENRKKERLKYLIERLGLEKFREEVEER 153
PLN02431 PLN02431
ferredoxin--nitrite reductase
81-543 4.07e-34

ferredoxin--nitrite reductase


Pssm-ID: 178050 [Multi-domain]  Cd Length: 587  Bit Score: 136.45  E-value: 4.07e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670   81 LLRCRLPGGVITTKQWQ----AIDKFaGEntiYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVl 156
Cdd:PLN02431 138 MMRLKLPNGVTTSAQTRylasVIEKY-GE---DGCADVTTRQNWQIRGVVLPDVPAILKGLEEVGLTSLQSGMDNVRNP- 212
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670  157 cTSNPYESqlhaeayewakkISEHLLPRTRAYAEIwLDQEKVATTDEEPILgqTYLPRKFKTTVVIPPQNDIDLHANDMN 236
Cdd:PLN02431 213 -VGNPLAG------------IDPHEIVDTRPYTNL-LSDYITNNGRGNPEI--TNLPRKWNVCVVGSHDLFEHPHINDLA 276
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670  237 FVAIAENGKlVGFNLLVGGGLSIehgnkKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGV 316
Cdd:PLN02431 277 YMPATKDGR-FGFNLLVGGFFSP-----KRCAEAIPLDAWVPADDVVPLCKAILEAFRDLGTRGNRQKTRMMWLIDELGV 350
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670  317 ETFKAEVERRAGikfepirpyefTGRGDRIGWVKGIDDNWHLTLFI------ENGriLDYPARPLKTGLL------EIAK 384
Cdd:PLN02431 351 EGFRSEVEKRMP-----------NGELERAASEDLVDKKWERRDYLgvhpqkQEG--LSYVGLHVPVGRLqaadmdELAR 417
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670  385 IH----KGDFRITANQNLIIAGVPESekaKIEKIAKESgLMNAVTPQ----RENSMACVSFPTCPLAMAEAERFLPSFID 456
Cdd:PLN02431 418 LAdeygSGELRLTVEQNIIIPNVPNS---KVEALLAEP-LLQRFSPNpgllLKGLVACTGNQFCGQAIIETKARALKVTE 493
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670  457 NIDNLMAkhgvSDEHIVMRVTGCPNGCGRAMLAEVGLVG--------KAPGRYNLHLGGnRIG--TRIPRMYKENITEPE 526
Cdd:PLN02431 494 ELERLVE----VPRPVRMHWTGCPNSCGQVQVADIGFMGcmardengKAVEGADIFVGG-RVGsdSHLAEEYKKGVPCDE 568
                        490
                 ....*....|....*....
gi 16130670  527 ILASLDE-LIGRW-AKERE 543
Cdd:PLN02431 569 LVPVVADiLIEEFgAKERE 587
nirA PRK09567
NirA family protein;
13-554 1.18e-32

NirA family protein;


Pssm-ID: 236573 [Multi-domain]  Cd Length: 593  Bit Score: 132.45  E-value: 1.18e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670   13 GKLTDAERMKHESNYLrgtiaeDLNDGL-----TGGF-KGDNFLLIRFHGMYQ----QDdrdiraeraeqkleprhAMLL 82
Cdd:PRK09567  63 KKLCDQEKWKREENPF------DAWDRLkaqaaAGAFpKPADNFRWKYHGLFYvapaQD-----------------SYMC 119
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670   83 RCRLPGGVITTKQWQAI----DKFAGentiyGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVlcT 158
Cdd:PRK09567 120 RLRIPNGILTHWQFAGLadlaDRHGG-----GYSHVTTRANLQLREIPPEHAVPVLEGLVDLGLTARGSGADNIRNV--T 192
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670  159 SNPyesqlhaeayewAKKISEHLLPRTRAYAEIWldqekvattdEEPILGQ--TY-LPRKFKTTV----VIPPQNDidlh 231
Cdd:PRK09567 193 GSP------------TAGIDPQELLDTRPYAREW----------HHHILNDrsLYgLPRKFNVAFdgggRIATLED---- 246
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670  232 ANDMNFVA--IAENGKL---VGFNLLVGG--GlsieHgnkKTYARTAsefGY-LPLEHTLAVAEAVVTTQRDWGNRTDRK 303
Cdd:PRK09567 247 TNDIGFQAvrVLEGAGVapgVYFRLVLGGitG----H---KDFARDT---GVlLRPEEATAVADAIVRVFIENGDRTNRK 316
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670  304 NAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRG--DRIGWV-----KGIDDNWhLTLFIENGRILDYPARplk 376
Cdd:PRK09567 317 KARLKYVLDAWGFDKFLEAVEEKLGRPLTRVPAEAVAPRPaaDRFAHVgvhpqKQPGLNW-IGVVLPVGRLTTDQMR--- 392
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670  377 tGLLEIAKIH-KGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFI 455
Cdd:PRK09567 393 -GLAKIAARYgDGEIRLTVWQNLLISGVPDADVAAVEAAIEALGLTTEASSIRAGLVACTGNAGCKFAAADTKGHALAIA 471
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670  456 DNIDNLMAkhgvSDEHIVMRVTGCPNGCGRAMLAEVGLVG-KAPGR-------YNLHLGGN-----RIGTRIPRmykeNI 522
Cdd:PRK09567 472 DYCEPRVA----LDQPVNIHLTGCHHSCAQHYIGDIGLIGaKVAVSegdtvegYHIVVGGGfgedaAIGREVFR----DV 543
                        570       580       590
                 ....*....|....*....|....*....|...
gi 16130670  523 TEPEILASLDELIGRWAKEREA-GEGFGDFTVR 554
Cdd:PRK09567 544 KAEDAPRLVERLLRAYLAHRQGpDETFQAFTRR 576
nirA PRK09566
ferredoxin-nitrite reductase; Reviewed
81-507 6.86e-32

ferredoxin-nitrite reductase; Reviewed


Pssm-ID: 236572 [Multi-domain]  Cd Length: 513  Bit Score: 129.36  E-value: 6.86e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670   81 LLRCRLPGGVITTKQWQAIDKFA---GENtiyGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVlc 157
Cdd:PRK09566  67 MLRLRVPNGILTSEQLRVLASIVqryGDD---GSADITTRQNLQLRGILLEDLPEILNRLKAVGLTSVQSGMDNVRNI-- 141
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670  158 TSNPYESQLHAEAY---EWAKKISEHLlprtrayaeiwldqekvaTTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHAND 234
Cdd:PRK09566 142 TGSPVAGIDPDELIdtrPLTQKLQDML------------------TNNGEGNPEFSNLPRKFNIAIAGGRDNSVHAEIND 203
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670  235 MNFVAIAENGKLvGFNLLVGGGLSiehGNKKTYArtasefgyLPL------EHTLAVAEAVVTTQRDWGNRTDRKNAKTK 308
Cdd:PRK09566 204 IAFVPAYKDGVL-GFNVLVGGFFS---SQRCAYA--------IPLnawvkpDEVVRLCRAILEVYRDNGLRANRQKGRLM 271
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670  309 YTLERVGVETFKAEVERRAGIKFEPIRPyeftgrGDRIGWvkgiDDNWHLTLFIENGRILDY-----PA-RPLKTGLLEI 382
Cdd:PRK09566 272 WLIDEWGIEKFRAAVEAQFGPPLLTAAP------GDEIDW----EKRDHIGVHPQKQAGLNYvglhvPVgRLYAEDMFEL 341
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670  383 AKIHK----GDFRITANQNLIIAGVPESekaKIEKIAKESgLMNAVTPQREN----SMACVSFPTCPLAMAEA-ERflps 453
Cdd:PRK09566 342 ARLAEvygsGEIRLTVEQNVIIPNIPDE---NLETFLAEP-LLQKFSLEPGPlargLVSCTGNQYCNFALIETkNR---- 413
                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16130670  454 fidnidNLMAKHGVSDE-----HIVMRVTGCPNGCGRAMLAEVGLVG---KAPGR----YNLHLGG 507
Cdd:PRK09566 414 ------ALALAKELDAEldlpqPVRIHWTGCPNSCGQPQVADIGLMGtkaRKNGKtvegVDIYMGG 473
CobG TIGR02435
precorrin-3B synthase; An iron-sulfur protein. An oxygen atom from dioxygen is incorporated ...
81-500 3.01e-19

precorrin-3B synthase; An iron-sulfur protein. An oxygen atom from dioxygen is incorporated into the macrocycle at C-20. In the aerobic cobalamin biosythesis pathway, four enzymes are involved in the conversion of precorrin-3A to precorrin-6A. The first of the four steps is carried out by EC 1.14.13.83, precorrin-3B synthase (CobG), yielding precorrin-3B as the product. This is followed by three methylation reactions, which introduce a methyl group at C-17 (CobJ; EC 2.1.1.131), C-11 (CobM; EC 2.1.1.133) and C-1 (CobF; EC 2.1.1.152) of the macrocycle, giving rise to precorrin-4, precorrin-5 and precorrin-6A, respectively. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]


Pssm-ID: 274131 [Multi-domain]  Cd Length: 390  Bit Score: 89.85  E-value: 3.01e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670    81 LLRCRLPGGVITTKQWQAIDKFAgENTIYGSIRLTNRQTFQFHGIlKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSn 160
Cdd:TIGR02435  19 LVRVRLPGGRLTPAQAIGLADLA-ERLGNGIIEVTARGNLQLRGL-TADHDALSQALLAAGLGAAGAAADDIRNIEVSP- 95
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670   161 pyesqlhaeayewAKKISEHLLPRTRAYAEIWLdqekvATTDEEPILGQtyLPRKFktTVVIPPQNDIDL--HANDMNFV 238
Cdd:TIGR02435  96 -------------LAGIDPGEIADTRPLAAELR-----AALENERALLE--LPPKF--SVAIDGGGRLVLlgDTADVRLQ 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670   239 AIaENGKLVGFNLLVGGglsiehgnKKTYARTAsefGYLPLEHTLAVAEAVVTTQRDWGNRtdrknAKTKYTLERVGVET 318
Cdd:TIGR02435 154 AL-TTGAGVAWVVSLAG--------ISTSARSL---VTVAPDAAVPVAVALLRVFVELGGA-----ARGRDLDDAFLFAL 216
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670   319 FKAEVERRAGIKFEPIR---PYEFTGRGDRIGWVKGIDDNWHLTLFIENGRIldyPARPLKtGLLEIAKIH-KGDFRITA 394
Cdd:TIGR02435 217 ALELVEDSRPLIPDAAEgeaPRPAVDAAAPLGLHPQGDAGVTLGAGLALGQL---TAAQLR-GLAQLAQALgDGDLRLTP 292
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130670   395 NQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAE----AERFLPSFIDNIDnlmakhgvsde 470
Cdd:TIGR02435 293 WRALLVLGLPPERADAAQRALAALGLVTSASDPRARIIACTGAPGCASALADtradAEALAAYCEPTAP----------- 361
                         410       420       430
                  ....*....|....*....|....*....|
gi 16130670   471 hIVMRVTGCPNGCGRAMLAEVGLVGKAPGR 500
Cdd:TIGR02435 362 -ITVHLSGCAKGCAHPGPAAITLVAAGAGY 390
NIR_SIR_ferr pfam03460
Nitrite/Sulfite reductase ferredoxin-like half domain; Sulfite and Nitrite reductases are key ...
82-140 3.38e-11

Nitrite/Sulfite reductase ferredoxin-like half domain; Sulfite and Nitrite reductases are key to both biosynthetic assimilation of sulfur and nitrogen and dissimilation of oxidized anions for energy transduction. Two copies of this repeat are found in Nitrite and Sulfite reductases and form a single structural domain.


Pssm-ID: 377044 [Multi-domain]  Cd Length: 67  Bit Score: 58.69  E-value: 3.38e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16130670    82 LRCRLPGGVITTKQWQAIDKFAGEntiYGS--IRLTNRQTFQFHGILKKNVKPVHQMLHSV 140
Cdd:pfam03460  10 VRVRVPGGRLTAEQLRALADIAEK---YGDgeIRLTTRQNLELHGVPEEDLPELLEELAEA 67
NIR_SIR_ferr pfam03460
Nitrite/Sulfite reductase ferredoxin-like half domain; Sulfite and Nitrite reductases are key ...
353-417 5.02e-10

Nitrite/Sulfite reductase ferredoxin-like half domain; Sulfite and Nitrite reductases are key to both biosynthetic assimilation of sulfur and nitrogen and dissimilation of oxidized anions for energy transduction. Two copies of this repeat are found in Nitrite and Sulfite reductases and form a single structural domain.


Pssm-ID: 377044 [Multi-domain]  Cd Length: 67  Bit Score: 55.61  E-value: 5.02e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16130670   353 DDNWHLTLFIENGRIldypARPLKTGLLEIAKIH-KGDFRITANQNLIIAGVPESEKAKIEKIAKE 417
Cdd:pfam03460   5 DGDYMVRVRVPGGRL----TAEQLRALADIAEKYgDGEIRLTTRQNLELHGVPEEDLPELLEELAE 66
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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