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Conserved domains on  [gi|145698307|ref|NP_417414|]
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acid stress response protein YqgB [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

similar to protein YqgB( domain architecture ID 10567360)

protein similar to protein YqgB

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YqgB pfam11036
Virulence promoting factor; YqgB encodes adaptive factors that acts in synergy with vqfZ, ...
 1-43 1.85e-23

Virulence promoting factor; YqgB encodes adaptive factors that acts in synergy with vqfZ, enabling the bacteria to cope with the physical environment in vivo, facilitating colonization of the host.


:

Pssm-ID: 151483  Cd Length: 43  Bit Score: 82.01  E-value: 1.85e-23
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 145698307   1 MKKKPVAQLERQHSLLENPCAYGLLSQFQAAIVVNCFTLNKII 43
Cdd:pfam11036  1 MKKKPVAQAEHQHSLLENPCAYGLLSQFQAAIVVNCFTLAKII 43
 
Name Accession Description Interval E-value
YqgB pfam11036
Virulence promoting factor; YqgB encodes adaptive factors that acts in synergy with vqfZ, ...
 1-43 1.85e-23

Virulence promoting factor; YqgB encodes adaptive factors that acts in synergy with vqfZ, enabling the bacteria to cope with the physical environment in vivo, facilitating colonization of the host.


Pssm-ID: 151483  Cd Length: 43  Bit Score: 82.01  E-value: 1.85e-23
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 145698307   1 MKKKPVAQLERQHSLLENPCAYGLLSQFQAAIVVNCFTLNKII 43
Cdd:pfam11036  1 MKKKPVAQAEHQHSLLENPCAYGLLSQFQAAIVVNCFTLAKII 43
small_YqgB NF033844
acid stress response protein YqgB;
1-40 9.23e-19

acid stress response protein YqgB;


Pssm-ID: 411413  Cd Length: 40  Bit Score: 69.81  E-value: 9.23e-19
                        10        20        30        40
                ....*....|....*....|....*....|....*....|
gi 145698307  1 MKKKPVAQLERQHSLLENPCAYGLLSQFQAAIVVNCFTLN 40
Cdd:NF033844  1 MNKKPVAQSQRQHYLLGNRAVYGLLSRLRIAIVVNCFTLS 40
 
Name Accession Description Interval E-value
YqgB pfam11036
Virulence promoting factor; YqgB encodes adaptive factors that acts in synergy with vqfZ, ...
 1-43 1.85e-23

Virulence promoting factor; YqgB encodes adaptive factors that acts in synergy with vqfZ, enabling the bacteria to cope with the physical environment in vivo, facilitating colonization of the host.


Pssm-ID: 151483  Cd Length: 43  Bit Score: 82.01  E-value: 1.85e-23
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 145698307   1 MKKKPVAQLERQHSLLENPCAYGLLSQFQAAIVVNCFTLNKII 43
Cdd:pfam11036  1 MKKKPVAQAEHQHSLLENPCAYGLLSQFQAAIVVNCFTLAKII 43
small_YqgB NF033844
acid stress response protein YqgB;
1-40 9.23e-19

acid stress response protein YqgB;


Pssm-ID: 411413  Cd Length: 40  Bit Score: 69.81  E-value: 9.23e-19
                        10        20        30        40
                ....*....|....*....|....*....|....*....|
gi 145698307  1 MKKKPVAQLERQHSLLENPCAYGLLSQFQAAIVVNCFTLN 40
Cdd:NF033844  1 MNKKPVAQSQRQHYLLGNRAVYGLLSRLRIAIVVNCFTLS 40
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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