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Conserved domains on  [gi|162135908|ref|NP_417589|]
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DNA-binding transcriptional activator TdcR [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

PRK11424 family protein( domain architecture ID 10013798)

PRK11424 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK11424 PRK11424
DNA-binding transcriptional activator TdcR; Provisional
 1-72 7.50e-38

DNA-binding transcriptional activator TdcR; Provisional


:

Pssm-ID: 236909  Cd Length: 114  Bit Score: 121.63  E-value: 7.50e-38
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 162135908   1 MSKFSNFIINKPFSVINNAACHIFSRYLLENKHLFYQYFKISNTCIDHLEQLINVNFFSSDRTSFCECNRFP 72
Cdd:PRK11424  43 MSKFSNFIINKPFSAINNAARHIFSRYLLENKHLFYQYFKISNTGIDHLEQLINVNFFSSDRTSFCECNRFP 114
 
Name Accession Description Interval E-value
PRK11424 PRK11424
DNA-binding transcriptional activator TdcR; Provisional
 1-72 7.50e-38

DNA-binding transcriptional activator TdcR; Provisional


Pssm-ID: 236909  Cd Length: 114  Bit Score: 121.63  E-value: 7.50e-38
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 162135908   1 MSKFSNFIINKPFSVINNAACHIFSRYLLENKHLFYQYFKISNTCIDHLEQLINVNFFSSDRTSFCECNRFP 72
Cdd:PRK11424  43 MSKFSNFIINKPFSAINNAARHIFSRYLLENKHLFYQYFKISNTGIDHLEQLINVNFFSSDRTSFCECNRFP 114
 
Name Accession Description Interval E-value
PRK11424 PRK11424
DNA-binding transcriptional activator TdcR; Provisional
 1-72 7.50e-38

DNA-binding transcriptional activator TdcR; Provisional


Pssm-ID: 236909  Cd Length: 114  Bit Score: 121.63  E-value: 7.50e-38
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 162135908   1 MSKFSNFIINKPFSVINNAACHIFSRYLLENKHLFYQYFKISNTCIDHLEQLINVNFFSSDRTSFCECNRFP 72
Cdd:PRK11424  43 MSKFSNFIINKPFSAINNAARHIFSRYLLENKHLFYQYFKISNTGIDHLEQLINVNFFSSDRTSFCECNRFP 114
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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