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Conserved domains on  [gi|16131034|ref|NP_417611|]
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putative fimbrial protein YraH [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

fimbrial protein( domain architecture ID 10007530)

fimbrial protein similar to Escherichia coli fimbrial adapter PapF, which is required for the correct presentation of the PapG adhesin at the distal end of the tip fibrillum

Gene Ontology:  GO:0009289|GO:0007155
PubMed:  1670938|22411982|2890081

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
1-193 6.97e-31

Pilin (type 1 fimbrial protein) [Cell motility];


:

Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 110.51  E-value: 6.97e-31
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131034   1 MNKVTkTAIAGLLALFAGNAAATDGEIVFDGEILKSACEINDSDKKIEVALGHYNAEQFRNIGERSPKIPFTIPLVNCPM 80
Cdd:COG3539   1 MKKLL-LALLLALALSAAAAAAADGTVNFTGTVVAPTCTINTGSKDQTVDLGTVSTSDLNGVGSTSGPKPFSIKLTNCDA 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131034  81 TGwehdNGNVEASFrlwletrDNGTVPNFPNLAKVGsfAGIAATGVGIRIDDAeSGNIMPLNamgndNTVYQIPAESNGI 160
Cdd:COG3539  80 GT----SNSVKVTF-------TGTADSANPGLLANT--GSGGASGVGIQLLDS-DGTPIPLG-----TPSSAVTLTSNGS 140

                       170       180       190
                ....*....|....*....|....*....|...
gi 16131034 161 VNVDLIAYYVSTvvPSEITPGEADAIVNVTLDY 193
Cdd:COG3539 141 ATLPFYARYVAT--GATVTAGSFNATATFTIDY 171
 
Name Accession Description Interval E-value
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
1-193 6.97e-31

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 110.51  E-value: 6.97e-31
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131034   1 MNKVTkTAIAGLLALFAGNAAATDGEIVFDGEILKSACEINDSDKKIEVALGHYNAEQFRNIGERSPKIPFTIPLVNCPM 80
Cdd:COG3539   1 MKKLL-LALLLALALSAAAAAAADGTVNFTGTVVAPTCTINTGSKDQTVDLGTVSTSDLNGVGSTSGPKPFSIKLTNCDA 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131034  81 TGwehdNGNVEASFrlwletrDNGTVPNFPNLAKVGsfAGIAATGVGIRIDDAeSGNIMPLNamgndNTVYQIPAESNGI 160
Cdd:COG3539  80 GT----SNSVKVTF-------TGTADSANPGLLANT--GSGGASGVGIQLLDS-DGTPIPLG-----TPSSAVTLTSNGS 140

                       170       180       190
                ....*....|....*....|....*....|...
gi 16131034 161 VNVDLIAYYVSTvvPSEITPGEADAIVNVTLDY 193
Cdd:COG3539 141 ATLPFYARYVAT--GATVTAGSFNATATFTIDY 171
Fimbrial pfam00419
Fimbrial protein;
27-194 1.95e-21

Fimbrial protein;


Pssm-ID: 425671  Cd Length: 152  Bit Score: 85.57  E-value: 1.95e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131034    27 IVFDGEILK--SACEINDSDKkIEVALGHYNAEQFRNIGERSPKIPFTIPlVNCPmTGWEHDNGNVEASfrlwletrdNG 104
Cdd:pfam00419   1 INFTGTVTRvpATCKITAGTP-IEVDFGQIPVNELNAGGEGSRQKPFSIT-LECS-SGSSAVKVTVGLF---------GT 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131034   105 TVPNFPNLAKVGSFAGiAATGVGIRIDDAESGNIMPlnamgnDNTVYQIPAESNGIV--NVDLIAYYVSTVVPsEITPGE 182
Cdd:pfam00419  69 ADASSPNLLLTGNGAG-AATGVGIRLYDANGGALPP------NNGTSSIPVSATAAVatGITFTASLVATTGG-TPTAGD 140

                         170
                  ....*....|..
gi 16131034   183 ADAIVNVTLDYR 194
Cdd:pfam00419 141 FNATATIVVDYQ 152
lpfA PRK15289
fimbrial protein; Provisional
 9-194 1.06e-15

fimbrial protein; Provisional


Pssm-ID: 185189  Cd Length: 190  Bit Score: 71.53  E-value: 1.06e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131034    9 IAGLLAL----FAGNAAATDGEIVFDGEILKSACEINDSDKKIEVALGHYNAEQFRNIGERSPKIPFTIPLVNCPMT--- 81
Cdd:PRK15289   6 IGGAFTLaslmLAGHALAEDGVVHFVGEIVDTTCEVTSDTADQIVPLGKVSKNAFSGVGSLASPQKFSIKLENCPATytq 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131034   82 ------GWEHDNGNVEasfrLWLETRDNGTVPNfpnlAKVGSFAGIAATGVGIRIDDAESGNIMPLnamgNDNTVYQiPA 155
Cdd:PRK15289  86 aavrfdGTEAPGGDGD----LKVGTPLTAGNPG----DFTGTGQAIAATGVGIRIFNQSDNSQVKL----YNDSAYT-AI 152

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 16131034  156 ESNGIVNVDLIAYYVSTvvPSEITPGEADAIVNVTLDYR 194
Cdd:PRK15289 153 DAEGKAEMKFIARYVAT--NATVTAGTANADSQFTVEYK 189
 
Name Accession Description Interval E-value
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
1-193 6.97e-31

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 110.51  E-value: 6.97e-31
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131034   1 MNKVTkTAIAGLLALFAGNAAATDGEIVFDGEILKSACEINDSDKKIEVALGHYNAEQFRNIGERSPKIPFTIPLVNCPM 80
Cdd:COG3539   1 MKKLL-LALLLALALSAAAAAAADGTVNFTGTVVAPTCTINTGSKDQTVDLGTVSTSDLNGVGSTSGPKPFSIKLTNCDA 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131034  81 TGwehdNGNVEASFrlwletrDNGTVPNFPNLAKVGsfAGIAATGVGIRIDDAeSGNIMPLNamgndNTVYQIPAESNGI 160
Cdd:COG3539  80 GT----SNSVKVTF-------TGTADSANPGLLANT--GSGGASGVGIQLLDS-DGTPIPLG-----TPSSAVTLTSNGS 140

                       170       180       190
                ....*....|....*....|....*....|...
gi 16131034 161 VNVDLIAYYVSTvvPSEITPGEADAIVNVTLDY 193
Cdd:COG3539 141 ATLPFYARYVAT--GATVTAGSFNATATFTIDY 171
Fimbrial pfam00419
Fimbrial protein;
27-194 1.95e-21

Fimbrial protein;


Pssm-ID: 425671  Cd Length: 152  Bit Score: 85.57  E-value: 1.95e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131034    27 IVFDGEILK--SACEINDSDKkIEVALGHYNAEQFRNIGERSPKIPFTIPlVNCPmTGWEHDNGNVEASfrlwletrdNG 104
Cdd:pfam00419   1 INFTGTVTRvpATCKITAGTP-IEVDFGQIPVNELNAGGEGSRQKPFSIT-LECS-SGSSAVKVTVGLF---------GT 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131034   105 TVPNFPNLAKVGSFAGiAATGVGIRIDDAESGNIMPlnamgnDNTVYQIPAESNGIV--NVDLIAYYVSTVVPsEITPGE 182
Cdd:pfam00419  69 ADASSPNLLLTGNGAG-AATGVGIRLYDANGGALPP------NNGTSSIPVSATAAVatGITFTASLVATTGG-TPTAGD 140

                         170
                  ....*....|..
gi 16131034   183 ADAIVNVTLDYR 194
Cdd:pfam00419 141 FNATATIVVDYQ 152
lpfA PRK15289
fimbrial protein; Provisional
 9-194 1.06e-15

fimbrial protein; Provisional


Pssm-ID: 185189  Cd Length: 190  Bit Score: 71.53  E-value: 1.06e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131034    9 IAGLLAL----FAGNAAATDGEIVFDGEILKSACEINDSDKKIEVALGHYNAEQFRNIGERSPKIPFTIPLVNCPMT--- 81
Cdd:PRK15289   6 IGGAFTLaslmLAGHALAEDGVVHFVGEIVDTTCEVTSDTADQIVPLGKVSKNAFSGVGSLASPQKFSIKLENCPATytq 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131034   82 ------GWEHDNGNVEasfrLWLETRDNGTVPNfpnlAKVGSFAGIAATGVGIRIDDAESGNIMPLnamgNDNTVYQiPA 155
Cdd:PRK15289  86 aavrfdGTEAPGGDGD----LKVGTPLTAGNPG----DFTGTGQAIAATGVGIRIFNQSDNSQVKL----YNDSAYT-AI 152

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 16131034  156 ESNGIVNVDLIAYYVSTvvPSEITPGEADAIVNVTLDYR 194
Cdd:PRK15289 153 DAEGKAEMKFIARYVAT--NATVTAGTANADSQFTVEYK 189
PRK15209 PRK15209
long polar fimbrial protein LpfA; Provisional
 13-193 3.08e-15

long polar fimbrial protein LpfA; Provisional


Pssm-ID: 185131 [Multi-domain]  Cd Length: 174  Bit Score: 70.00  E-value: 3.08e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131034   13 LALFAGNAAAT---DGEIVFDGEILKSACEINDSDKKIEVALGHYNAEQFRNIGERSPKIPFTIPLVNCPMTgwehDNGN 89
Cdd:PRK15209  11 LALTSTSVFAAesgDGTVKFTGEIVDAPCVVSTDSQNQEVVLGQVKKSVFKAIGDKSSAKPFQIKLEDCDIT----TNKK 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131034   90 VEASFRLWLETRDngtvpnfPNLAKVGSFAGiAATGVGIRIDDaESGNIMPLNAmGNDNTVYqipaeSNGIVNVDLIAYY 169
Cdd:PRK15209  87 VNVSFNGVGDADD-------STLVSVSTEAG-AATGVGIGIYD-NANTLVELNT-GKSTTTL-----AAGQTVLYFTANY 151

                        170       180
                 ....*....|....*....|....
gi 16131034  170 VSTVvpSEITPGEADAIVNVTLDY 193
Cdd:PRK15209 152 VSTK--DTVTTGYGNAEVDFNLSY 173
PRK15194 PRK15194
type 1 fimbrial protein subunit FimA;
3-193 7.49e-12

type 1 fimbrial protein subunit FimA;


Pssm-ID: 237920  Cd Length: 185  Bit Score: 61.12  E-value: 7.49e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131034    3 KVTKTAIAGLLaLFAGNAAATD--------GEIVFDGEILKSACEINDSDKKIEVALGHYNAEQFRNIGERSPKIPFTIP 74
Cdd:PRK15194   4 RFISSAIASLL-FVAGAAYAADptpvsvdgGTIHFEGELVNAACSVNTDSADQTVTLGQYRTAIFTAVGNTTALIPFTIQ 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131034   75 LVNCpmtgwehdNGNVEASFRLWLETRDNGTVPNFpnLAKVGSFAGIAATGVGIRIDDAESGnimPLNAMGNDNTVYQIP 154
Cdd:PRK15194  83 LNDC--------DPVVAATAAVAFSGQADATNDNL--LAVASSTNTTTATGVGIEILDNTSS---ILKPDGATFSANQNL 149

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 16131034  155 AESNGIVNvdLIAYYVSTVvpSEITPGEADAIVNVTLDY 193
Cdd:PRK15194 150 IEGTNTLH--FSARYKATG--TSASAGQANADATFIMKY 184
PRK15296 PRK15296
fimbrial protein SthA;
6-194 8.95e-12

fimbrial protein SthA;


Pssm-ID: 185196  Cd Length: 181  Bit Score: 60.87  E-value: 8.95e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131034    6 KTAIAGLLALFAGNAAATDGEIVFDGEILKSACEIN-DSDKKIEVALGHYNAEQFRNIGERSPKIPFTIPLVNCPMTGwe 84
Cdd:PRK15296   5 KIIILAMLTAVASTPVFAQNTITFNGKIYDQACTVQvNGSTDTTIDLGNYSKERIAEKGATTDYVPFTVSLVSCPEAG-- 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131034   85 hDNGNVEASFRLWLETRDNGtvPNFPNLAKVGSFAGiaATGVGIRIDDAESGNImplnAMGNDNTVYQIPAESnGIVNVD 164
Cdd:PRK15296  83 -TGVPTQAMFRFHGATDDSN--PTYFKNADEGSETG--AAGVGISIQNASHSDV----TDNTDDAAVNLPTDG-STADFT 152

                        170       180       190
                 ....*....|....*....|....*....|
gi 16131034  165 LIAYYVSTVVpSEITPGEADAIVNVTLDYR 194
Cdd:PRK15296 153 YYAAMANDGS-ATVTGGDVSTQVTYTVSYQ 181
PRK09733 PRK09733
fimbrial-like protein;
9-194 1.87e-08

fimbrial-like protein;


Pssm-ID: 182053  Cd Length: 181  Bit Score: 51.87  E-value: 1.87e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131034    9 IAGLLALFAGNAAATDG--EIVFDGEILKSACEINDSDKKIEVALGHYnAEQFRNIGERSPKIPFTIPLVNCPMTGWEHD 86
Cdd:PRK09733   8 VAGVAMILSNNVFADEGhgIVKFKGEVISAPCSIKPGDEDLTVNLGEV-ADTVLKSDQKSLAEPFTIHLQDCMLSQGGTT 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131034   87 NGNVEASF-RLWLETRDNGTVPNfpnlAKVGSFAGiaATGVGIRIDDAESGNI---MPLNAMGNDNTVYQipaESNGIVN 162
Cdd:PRK09733  87 YSKAKVTFtTANTMTGQSDLLKN----TKETEIGG--ATGVGVRILDSQSGEVtlgTPVVITFNNTNSYQ---ELNFKAR 157

                        170       180       190
                 ....*....|....*....|....*....|..
gi 16131034  163 VDLIAyyvstvvpSEITPGEADAIVNVTLDYR 194
Cdd:PRK09733 158 MESPS--------KDATPGNVYAQADYKIAYE 181
PRK15210 PRK15210
fimbrial protein;
8-193 2.66e-07

fimbrial protein;


Pssm-ID: 185132  Cd Length: 194  Bit Score: 48.93  E-value: 2.66e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131034    8 AIAGLL---ALFAGNAAAT-----DGEIVFDGEILKSACEINDSDKKIEVALGHYNAEQFRNIGERSPKIPFTIPLVNCP 79
Cdd:PRK15210  10 AAAGMMygaSVFAADTTPTagpfgSGKILFTGTITNSPCDIAPGDDAITVPFGQISYRKLNTADATTESKPFTIHLQNCA 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131034   80 MTGWEHDNGN-------VEASFrlwletrdNGTVpnfpNLAKVGSFAGIAATGVGIRIDDAESGNIMPLNAMGNDNTVYQ 152
Cdd:PRK15210  90 FDPNIPDTAGsagkmskVTVSF--------SGTA----NTSKKAYTTSGSAQHVGVQLLKSDNTSIIEPNTPMPDGDAQQ 157

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 16131034  153 IPAESNgivNVDLIAYYVStvVPSEITPGEADAIVNVTLDY 193
Cdd:PRK15210 158 LQAGNN---ELNFFARLIA--LDNGVTPGDFNASVTYTLKY 193
PRK09934 PRK09934
fimbriae assembly protein;
1-193 1.13e-06

fimbriae assembly protein;


Pssm-ID: 182153 [Multi-domain]  Cd Length: 171  Bit Score: 46.81  E-value: 1.13e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131034    1 MNKVTKTAIAGLLALFAGNAAATDGEIVFD--GEILKSACEINDSDKKIEVALGHYNAEQFRNIGERSPKIPFTIPLVNC 78
Cdd:PRK09934   1 MRRVFFACFCGLLWSPLSWAADPLGEINIElhGNVVDFTCTVNTADSDKTVDLGTWPTKQLLNAGDTTQPVPFSLKLEGC 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131034   79 PmtgwehdNGNVEASFrlwletrdNGTVPNFPNLAKVGSFAgiAATGVGIRIDDAESGNiMPLNAMGNDNTVyqipaESN 158
Cdd:PRK09934  81 P-------PGSASITF--------TGTPASDTNLLALDDPA--MAQTVAIEIRDSDRSR-LALGQASPTVEV-----DAN 137

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 16131034  159 GIVNVDLIAYYVSTVvpSEITPGEADAIVNVTLDY 193
Cdd:PRK09934 138 GNATLNFYANYIALA--DGVQPGVAKADATFMINY 170
PRK15200 PRK15200
type 1 fimbrial protein subunit FimI;
5-193 7.83e-06

type 1 fimbrial protein subunit FimI;


Pssm-ID: 185122  Cd Length: 177  Bit Score: 44.46  E-value: 7.83e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131034    5 TKTAIAGLLAL---FAGNAAATDGEIVFDGEILKSACEINDSDKKIEVALGHYNAEQFRNIGERSP-KIPFTIPLVNCPM 80
Cdd:PRK15200   4 KGAALVGLVLMspvIAQPVMVESGRVHLRGQLVNGGCAVATESQDLRVLMGQYRTNAFTGPGSFAPvSVPFSLRLISCSA 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131034   81 TGWEHdngnVEASFRlwletrdnGTVPNFPNLAKVGSFAGIAATGVGIRIDDAESGNIMPlnamgNDNTVYQIPAESNGI 160
Cdd:PRK15200  84 EVWRH----VGIAFA--------GVTPAEDPHVFLASGEGIGNAGIGLALFDDQQRQIIP-----NTLPLHYAPILTSEM 146

                        170       180       190
                 ....*....|....*....|....*....|...
gi 16131034  161 vNVDLIAYYvsTVVPSEITPGEADAIVNVTLDY 193
Cdd:PRK15200 147 -TLHFTARY--RAISENMTPGRIHSEVWFTLVY 176
PRK15283 PRK15283
fimbrial major subunit StfA;
1-81 3.47e-05

fimbrial major subunit StfA;


Pssm-ID: 185183  Cd Length: 186  Bit Score: 42.83  E-value: 3.47e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131034    1 MNKVTKTAIAGLLAL----FAGNAAATDGEIVFDGEILKSACEINDSDKKIEVALGHYNAEQFRNiGERSPKIPFTIPLV 76
Cdd:PRK15283   1 MNTAVKAAVAAALVMgvssFANAAGSNTGTVTFTGTIEDSPCSIVVGDEHQTVNLGHIGTGSLMG-GKESSKVDFHIGLE 79


                 ....*
gi 16131034   77 NCPMT 81
Cdd:PRK15283  80 NCAFT 84
PRK15300 PRK15300
fimbrial protein StiA; Provisional
 1-193 4.01e-05

fimbrial protein StiA; Provisional


Pssm-ID: 185200  Cd Length: 179  Bit Score: 42.39  E-value: 4.01e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131034    1 MNKVTKTAIAGLLALFAGNAA----ATDGEIVFDGEILKSACEIndSDKKIEVALGHYNAEQFRNIGERSPKIPFTIPLV 76
Cdd:PRK15300   1 MKLSLKTLTVALAAITLSPAAladtAKDGTVHITGLIKQNACTV--KTDSVEVTLQEEFASLFTAAGQTAGDTDFTIELE 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131034   77 NCPMTGWEhdngNVEASFRLWLETRDNGTVPNFPNlakvgsfagiaATGVGIRIDDAESgNIMPLNAMGNDNTVYQIP-A 155
Cdd:PRK15300  79 NCDANVYS----SVQARFEGTLDGTDATILKNEDD-----------AENIGVQILDKTS-TPMTFNDLQAWSAAVALPtA 142

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 16131034  156 ESNGIVNVDLIAYYVSTVVPseITPGEADAIVNVTLDY 193
Cdd:PRK15300 143 EGVTELSMPFTARYIATAVP--VKSGTVDATATFYLQY 178
PRK15191 PRK15191
fimbrial protein BcfF; Provisional
 13-193 1.06e-04

fimbrial protein BcfF; Provisional


Pssm-ID: 185113 [Multi-domain]  Cd Length: 172  Bit Score: 41.24  E-value: 1.06e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131034   13 LALFAGNAAATDGEIVFDGEILKSACEINDSDKKIEVALGHYNAEQFRNIGERSPKIPFTIPLVNCPMTGwehdnGNVEA 92
Cdd:PRK15191  11 MLLAASGVQAHDGRVYVSGTITDNTCSLSPGSENINVAMGAVSQRQFYRAGDGSAWQPFAIDLQNCGSTA-----SGVTV 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131034   93 SFRLWLETRdngtvpnfpNLAKVGSFAGIA-ATGVGIRIDDaESGNIMPLNAMGNDNTVyqipaeSNGIVNVDLIAYYVS 171
Cdd:PRK15191  86 SFSGAADSR---------NTDLLALTAGESdASGIGIALYD-QNKTLIPLGQESDVVTL------SPGQASAHLQFYARY 149

                        170       180
                 ....*....|....*....|..
gi 16131034  172 TVVPSEITPGEADAIVNVTLDY 193
Cdd:PRK15191 150 LADGGAVTPGDANASATFILAY 171
PRK15190 PRK15190
fimbrial protein BcfE; Provisional
 19-193 6.65e-03

fimbrial protein BcfE; Provisional


Pssm-ID: 185112  Cd Length: 181  Bit Score: 35.83  E-value: 6.65e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131034   19 NAAATD--GEIVFDGEILKSACEINDSDKKIEVALGHYNAEQFRNIGERSPKIPFTIPLVNCPMTgwehdngnvEASFRL 96
Cdd:PRK15190  20 NASADDlaYNLEFTGTIVAQTCDIDISSLSQSIDLGQFAVGDFPSTGTTTKFKPFNINLKNCSRG---------IAGAKI 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131034   97 WLETRDNGTVPNFPNLAKVGSFAG-IAATGVGIRIDDAESGNIMPLNAmgnDNTVYQIPAESNgivnvdLIAYYV--STV 173
Cdd:PRK15190  91 WFTGEPDPDNPALLAITDTGMGSGnMLASGVGVEILNDDQDTISINNA---DSVVYPLKAGRN------TLSFYIryKST 161

                        170       180
                 ....*....|....*....|
gi 16131034  174 VPSeITPGEADAIVNVTLDY 193
Cdd:PRK15190 162 RPT-VTSGNATAVMYFDMQY 180
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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