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Conserved domains on  [gi|16131035|ref|NP_417612|]
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putative fimbrial chaperone YraI [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

molecular chaperone( domain architecture ID 11459711)

molecular chaperone belonging to the periplasmic pilus chaperone family may be involved in fimbrial biogenesis; similar to Escherichia coli fimbrial chaperones, YraI, YqiH, YbgP and ElfD

CATH:  2.60.40.10
Gene Ontology:  GO:0061077|GO:0030288|GO:0043711
PubMed:  1683764|8670884
SCOP:  4002248|4007561

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FimC COG3121
P pilus assembly protein, chaperone PapD [Extracellular structures];
3-223 3.58e-84

P pilus assembly protein, chaperone PapD [Extracellular structures];


:

Pssm-ID: 442355 [Multi-domain]  Cd Length: 237  Bit Score: 249.91  E-value: 3.58e-84
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035   3 KRTFAVILTLLCSFCIGQALAGGIVLQRTRVIYDASRKEAALPVANKGaETPYLLQSWVDNIDG-----KSRAPFIITPP 77
Cdd:COG3121   2 KRLLRLLLLALLLLLASAAAAAGISISPTRVIYPAGDKEASLTLTNTG-DTPYLVQSWVDDWDQdagpdKATAPFVVTPP 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035  78 LFRLEAGDDSSLRIIKTADNLPENKESLFYINVRAIPAKKKSDDvNANELTLVFKTRIKMFYRPAHLKGRVNDAWKSLEF 157
Cdd:COG3121  81 LFRLEPGKSQTVRIIRTGPPLPQDRESLFRLNVDEIPPKDASEE-GKNTLQIALRTRIKLFYRPAGLKGSPEDAAEKLTW 159

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16131035 158 KRSDHSLNIYNPTEYYVVFAGLAVD--KTDLTSKIEYIAPGEHKQLPLPAS----GGKNVKWAAINDYGGSS 223
Cdd:COG3121 160 SLVGNGLTVTNPGPYYVTLSDLSLGagGKKLKKGLGMVLPGSTRRWPLPAGaslaAGGKVTWATINDYGGAV 231
 
Name Accession Description Interval E-value
FimC COG3121
P pilus assembly protein, chaperone PapD [Extracellular structures];
3-223 3.58e-84

P pilus assembly protein, chaperone PapD [Extracellular structures];


Pssm-ID: 442355 [Multi-domain]  Cd Length: 237  Bit Score: 249.91  E-value: 3.58e-84
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035   3 KRTFAVILTLLCSFCIGQALAGGIVLQRTRVIYDASRKEAALPVANKGaETPYLLQSWVDNIDG-----KSRAPFIITPP 77
Cdd:COG3121   2 KRLLRLLLLALLLLLASAAAAAGISISPTRVIYPAGDKEASLTLTNTG-DTPYLVQSWVDDWDQdagpdKATAPFVVTPP 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035  78 LFRLEAGDDSSLRIIKTADNLPENKESLFYINVRAIPAKKKSDDvNANELTLVFKTRIKMFYRPAHLKGRVNDAWKSLEF 157
Cdd:COG3121  81 LFRLEPGKSQTVRIIRTGPPLPQDRESLFRLNVDEIPPKDASEE-GKNTLQIALRTRIKLFYRPAGLKGSPEDAAEKLTW 159

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16131035 158 KRSDHSLNIYNPTEYYVVFAGLAVD--KTDLTSKIEYIAPGEHKQLPLPAS----GGKNVKWAAINDYGGSS 223
Cdd:COG3121 160 SLVGNGLTVTNPGPYYVTLSDLSLGagGKKLKKGLGMVLPGSTRRWPLPAGaslaAGGKVTWATINDYGGAV 231
PRK15208 PRK15208
molecular chaperone LpfB;
1-230 1.92e-62

molecular chaperone LpfB;


Pssm-ID: 237925 [Multi-domain]  Cd Length: 228  Bit Score: 194.74  E-value: 1.92e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035    1 MSKRTFAVILTLLCSfciGQALAGGIVLQRTRVIYDASRKEAALPVANKGAETPYLLQSWVDNIDGKSRAPFIITPPLFR 80
Cdd:PRK15208   1 MRLISFTALALALIA---QNSFAGGVALSSTRVIYDGSKKEASLTVNNKSKTEEFLIQSWIDDANGNKKTPFIITPPLFK 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035   81 LEAGDDSSLRIIKTADNLPENKESLFYINVRAIPAkKKSDDVNANELTLVFKTRIKMFYRPAHLKGRVNDAWKSLEFKRS 160
Cdd:PRK15208  78 LDPTKNNVLRIVNITNTLPQDRESVYWINVKAIPA-KSEDAENKNVLQIAVRTRLKLFYRPAGLKGNSMDAWNKLRFTRA 156

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16131035  161 DHSLNIYNPTEYYVVFAGLAVDKTDLTSKIEYIAPGEhKQLPLPASGGK--NVKWAAINDYGGSSGTETRPL 230
Cdd:PRK15208 157 GNQIKVENPSAFNLTFNQFYANGRDIEKAGMVPAKGS-LNIELPAGTGKvsEVKYNIINDFGTAGEMLTKRV 227
PapD_N pfam00345
Pili and flagellar-assembly chaperone, PapD N-terminal domain; C2 domain-like beta-sandwich ...
 26-145 5.90e-53

Pili and flagellar-assembly chaperone, PapD N-terminal domain; C2 domain-like beta-sandwich fold. This domain is the n-terminal part of the PapD chaperone protein for pilus and flagellar assembly.


Pssm-ID: 425623  Cd Length: 123  Bit Score: 166.61  E-value: 5.90e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035    26 IVLQRTRVIYDASRKEAALPVANKGAeTPYLLQSWVDN-----IDGKSRAPFIITPPLFRLEAGDDSSLRIIKTADNLPE 100
Cdd:pfam00345   1 VVLGGTRVIYPAGEKEASVTVSNTGD-NPYLVQSWVDDgneegTDEKAKAPFIVTPPLFRLEPGQEQVLRIYTTGPPLPT 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 16131035   101 NKESLFYINVRAIPAKKKSDDVNaNELTLVFKTRIKMFYRPAHLK 145
Cdd:pfam00345  80 DRESLFWLNVLEIPPKDKPKGGQ-NGLQLALRSRIKLFYRPAGLA 123
 
Name Accession Description Interval E-value
FimC COG3121
P pilus assembly protein, chaperone PapD [Extracellular structures];
3-223 3.58e-84

P pilus assembly protein, chaperone PapD [Extracellular structures];


Pssm-ID: 442355 [Multi-domain]  Cd Length: 237  Bit Score: 249.91  E-value: 3.58e-84
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035   3 KRTFAVILTLLCSFCIGQALAGGIVLQRTRVIYDASRKEAALPVANKGaETPYLLQSWVDNIDG-----KSRAPFIITPP 77
Cdd:COG3121   2 KRLLRLLLLALLLLLASAAAAAGISISPTRVIYPAGDKEASLTLTNTG-DTPYLVQSWVDDWDQdagpdKATAPFVVTPP 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035  78 LFRLEAGDDSSLRIIKTADNLPENKESLFYINVRAIPAKKKSDDvNANELTLVFKTRIKMFYRPAHLKGRVNDAWKSLEF 157
Cdd:COG3121  81 LFRLEPGKSQTVRIIRTGPPLPQDRESLFRLNVDEIPPKDASEE-GKNTLQIALRTRIKLFYRPAGLKGSPEDAAEKLTW 159

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16131035 158 KRSDHSLNIYNPTEYYVVFAGLAVD--KTDLTSKIEYIAPGEHKQLPLPAS----GGKNVKWAAINDYGGSS 223
Cdd:COG3121 160 SLVGNGLTVTNPGPYYVTLSDLSLGagGKKLKKGLGMVLPGSTRRWPLPAGaslaAGGKVTWATINDYGGAV 231
PRK15208 PRK15208
molecular chaperone LpfB;
1-230 1.92e-62

molecular chaperone LpfB;


Pssm-ID: 237925 [Multi-domain]  Cd Length: 228  Bit Score: 194.74  E-value: 1.92e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035    1 MSKRTFAVILTLLCSfciGQALAGGIVLQRTRVIYDASRKEAALPVANKGAETPYLLQSWVDNIDGKSRAPFIITPPLFR 80
Cdd:PRK15208   1 MRLISFTALALALIA---QNSFAGGVALSSTRVIYDGSKKEASLTVNNKSKTEEFLIQSWIDDANGNKKTPFIITPPLFK 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035   81 LEAGDDSSLRIIKTADNLPENKESLFYINVRAIPAkKKSDDVNANELTLVFKTRIKMFYRPAHLKGRVNDAWKSLEFKRS 160
Cdd:PRK15208  78 LDPTKNNVLRIVNITNTLPQDRESVYWINVKAIPA-KSEDAENKNVLQIAVRTRLKLFYRPAGLKGNSMDAWNKLRFTRA 156

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16131035  161 DHSLNIYNPTEYYVVFAGLAVDKTDLTSKIEYIAPGEhKQLPLPASGGK--NVKWAAINDYGGSSGTETRPL 230
Cdd:PRK15208 157 GNQIKVENPSAFNLTFNQFYANGRDIEKAGMVPAKGS-LNIELPAGTGKvsEVKYNIINDFGTAGEMLTKRV 227
PRK15195 PRK15195
molecular chaperone FimC;
3-220 4.07e-54

molecular chaperone FimC;


Pssm-ID: 185117 [Multi-domain]  Cd Length: 229  Bit Score: 173.51  E-value: 4.07e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035    3 KRTFAVILTLLCSFCIgQAlAGGIVLQRTRVIYDASRKEAALPVANKGAETPYLLQSWVDNIDGKSRAPFIITPPLFRLE 82
Cdd:PRK15195   6 KLGMIIIFYLIISASV-HA-AGGIALGATRVIYPADAKQTSLAIRNSHTNERYLVNSWIENSSGVKEKSFIVTPPLFVSE 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035   83 AGDDSSLRIIKTADNLPENKESLFYINVRAIPAKKKSDDVNANELTLVFKTRIKMFYRPAHLKGRVNDAWKSLEFKRSDH 162
Cdd:PRK15195  84 PKSENTLRIIYAGPPLAADRESLFWMNVKAIPSVDKNALEGRNVLQLAILSRIKLFVRPINLQELPEEAPDTLKFSRSGN 163

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 16131035  163 SLNIYNPTEYYVVFAGLAVDKTDLTSKIeyIAPGEHKQLPLPASGGKNVKWAAINDYG 220
Cdd:PRK15195 164 HLKVHNPSPYYVTLVNLQVGSQKLGNAM--IAPKVNSQIPLPSGVQGKLKFQTVNDYG 219
PapD_N pfam00345
Pili and flagellar-assembly chaperone, PapD N-terminal domain; C2 domain-like beta-sandwich ...
 26-145 5.90e-53

Pili and flagellar-assembly chaperone, PapD N-terminal domain; C2 domain-like beta-sandwich fold. This domain is the n-terminal part of the PapD chaperone protein for pilus and flagellar assembly.


Pssm-ID: 425623  Cd Length: 123  Bit Score: 166.61  E-value: 5.90e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035    26 IVLQRTRVIYDASRKEAALPVANKGAeTPYLLQSWVDN-----IDGKSRAPFIITPPLFRLEAGDDSSLRIIKTADNLPE 100
Cdd:pfam00345   1 VVLGGTRVIYPAGEKEASVTVSNTGD-NPYLVQSWVDDgneegTDEKAKAPFIVTPPLFRLEPGQEQVLRIYTTGPPLPT 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 16131035   101 NKESLFYINVRAIPAKKKSDDVNaNELTLVFKTRIKMFYRPAHLK 145
Cdd:pfam00345  80 DRESLFWLNVLEIPPKDKPKGGQ-NGLQLALRSRIKLFYRPAGLA 123
PRK15299 PRK15299
fimbrial chaperone protein StiB; Provisional
 12-222 4.55e-49

fimbrial chaperone protein StiB; Provisional


Pssm-ID: 185199 [Multi-domain]  Cd Length: 227  Bit Score: 160.33  E-value: 4.55e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035   12 LLCSFCIGQALAGGIVLQRTRVIYDASRKEAALPVANKGaETPYLLQSWVDNID---GKSRAPFIITPPLFRLEAGDDSS 88
Cdd:PRK15299  10 LCCLLCGSLAHAAGINIGTTRVIFHGDAKDASISISNSD-NVPYLIQSWAQSISetgASGDAPFMVTPPLFRLNGGQKNV 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035   89 LRIIKTADNLPENKESLFYINVRAIPAkkKSDDVNANELTLVFKTRIKMFYRPAHLKGRVNDAWKSLEFKRSDHSLNIYN 168
Cdd:PRK15299  89 LRIIRTGGNLPEDRESLYWLDIKSIPS--SNPDNKHNTLMLAVKAEFKLIYRPKALTQKPEEVADRLTWSRQGRTLTVKN 166

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 16131035  169 PTEYYVVFAGLAVDKTDLTSKiEYIAPGEHKQLPLPASGGKNVKWAAINDYGGS 222
Cdd:PRK15299 167 PTPYYMNFATLSVGSQKVKAP-RYVAPFGNAQYTLPAAASGPIAWSIINDFGGT 219
lfpB PRK15290
fimbrial chaperone;
1-223 5.79e-47

fimbrial chaperone;


Pssm-ID: 237934 [Multi-domain]  Cd Length: 243  Bit Score: 155.53  E-value: 5.79e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035    1 MSKRTF-AVILTLlcsFCIGQALA-GGIVLQRTRVIYDASRKEAALPVANKGAETPYLLQSWVD--NIDGKSRAPFIITP 76
Cdd:PRK15290  15 VSCKLFtAIILSV---FLGQPALTyAGVVIGGTRVVYLSNNPDKSISVFSKEEKIPYLIQAWVDpfNKEDKSKAPFTVIP 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035   77 PLFRLEAGDDSSLRIIKTA-DNLPENKESLFYINVRAIPAKKKSDDvnANELTLVFKTRIKMFYRPAHLKGRVNDAWKSL 155
Cdd:PRK15290  92 PVSRLEPSQEKVLRIIHTKgVSLPDDRESVFWLNIKNIPPSASNKA--TNSLEIAVKTRIKLFWRPASIRLIPEDAAPKV 169

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16131035  156 EFKRSDHSLNIYNPTEYYVVFAGLAVDKTDLtsKIEYIAPGEHKQLPLPA-SGGKNVKWAAINDYGGSS 223
Cdd:PRK15290 170 KWRREGRNLIAENPNPIHISVMDVIVDGHDV--PLNMIRPFETLTLPLPAnSAGGQMTWRFINDYGAVS 236
PRK09926 PRK09926
fimbrial chaperone;
2-222 6.46e-47

fimbrial chaperone;


Pssm-ID: 236634 [Multi-domain]  Cd Length: 246  Bit Score: 155.26  E-value: 6.46e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035    2 SKRTFAVILTLLCSFCIGQALAGgIVLQRTRVIYDASRKEAALPVANKGaETPYLLQSWVD----NID-GKSRAPFIITP 76
Cdd:PRK09926   4 NTKHTTALCFATCMAFSSSSIAD-IVISGTRIIYKSDQKDVNVRLENKG-NNPLLVQSWLDtgddNAEpGSIKVPFTATP 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035   77 PLFRLEAGDDSSLRIIKTADN-LPENKESLFYINVRAIPAKKKSDDV-NANELTLVFKTRIKMFYRPAHLKGRVNDAWKS 154
Cdd:PRK09926  82 PVSRIDPKRGQTIKLMYTASTaLPKDRESVFWFNVLEVPPKPDAEKVaNQSLLQLAFRTRIKLFYRPDGLKGNPSEAPLA 161

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16131035  155 LEFKRSDH----SLNIYNPTEYYVVFAGLAVDKTDLTSKIE--YIAPGEH-----KQLPLPASGGKnVKWAAINDYGGS 222
Cdd:PRK09926 162 LKWSWAGSegkaSLRVTNPTPYYVSFSSGDLEAGGKRYPVDskMIAPFSDesmkvKGLSGKASSGK-VHFYAINDFGGA 239
PRK15211 PRK15211
fimbrial chaperone;
1-221 2.73e-44

fimbrial chaperone;


Pssm-ID: 185133 [Multi-domain]  Cd Length: 229  Bit Score: 148.05  E-value: 2.73e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035    1 MSKRTFAVILTLLcsFCiGQALAGgIVLQRTRVIYDASRKEAALPVANKGAETpYLLQSWVDNID-GKSRAPFIITPPLF 79
Cdd:PRK15211   3 MMKWGLVSLLSLA--VC-GQAMAA-FVLNGTRFIYDEGRKNISFEVTNQADQT-YGGQVWIDNTTqGSSTVYMVPAPPFF 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035   80 RLEAGDDSSLRIIKTADNLPENKESLFYINVRAIPAKKKSDDvnANELTLVFKTRIKMFYRPAHLKGRVNDAWKSLEFKR 159
Cdd:PRK15211  78 KVRPKEKQIIRIMKTDSALPKDRESLFWLNVQEIPPKPKASE--GNVLAVALNTQVKLIYRPKALKEGRENAEKNLQIIH 155

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16131035  160 SDHSLNIYNPTEYYVVFAGLAVDKTDL------TSKIEYIAPGEHKQLPLPASGGkNVKWAAINDYGG 221
Cdd:PRK15211 156 RGGETYLKNPTPYYFAVTGVKLNGQPVklsdrvMNEIAQLAPFSEVSLGKLSLNG-TVTVQAVNDWGG 222
PRK15295 PRK15295
fimbrial assembly chaperone;
9-222 5.48e-44

fimbrial assembly chaperone;


Pssm-ID: 237936 [Multi-domain]  Cd Length: 226  Bit Score: 147.40  E-value: 5.48e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035    9 ILTLLCSFCIGQAlagGIVLQRTRVIYDASRKEAALPVANKGaETPYLLQSWVDNIDGKSRA--PFIITPPLFRLEAGDD 86
Cdd:PRK15295   7 VLVVLLTSHVAHA---SIVVGGTRLVFDGNNDESSINVENKD-SKANLVQSWLSVVDPQVTNkqAFIITPPLFRLDAGQK 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035   87 SSLRIIKTADNLPENKESLFYINVRAIPAKKksDDVNANELTLVFKTRIKMFYRPAHLKGRVNDAW-KSLEFKRSDHSLN 165
Cdd:PRK15295  83 NSIRVIRSGAPLPADRESMYWLNIKGIPSID--DNASANRVEISINTQIKLIYRPPALTKSTPDSQsQQLKWQTAGDVIT 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 16131035  166 IYNPTEYYVVFAGLAVDKTDLTSKIeYIAPGEHKQLPLP--ASGGKNVKWAAINDYGGS 222
Cdd:PRK15295 161 VNNPTPYYMNFASVTLNSHEVKSAT-FVPPKSSASFKLGstAAPHGTVTWRLISDYGMS 218
PRK15224 PRK15224
pili assembly chaperone PapD;
26-223 9.00e-39

pili assembly chaperone PapD;


Pssm-ID: 185146 [Multi-domain]  Cd Length: 237  Bit Score: 134.10  E-value: 9.00e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035   26 IVLQRTRVIYDASRKEAALPVANKgAETPYLLQSWVDNIDGKSRAPFIITPPLFRLEAGDDSSLRIIKTADNLPENKESL 105
Cdd:PRK15224  30 VKLGATRVIYHAGTAGATLSVSNP-QNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTGGDMPTDRETL 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035  106 FYINVRAIPAKKKSDDVNANELTLVFKTRI----KMFYRPAHLKGRVNDAWKSLEFKRSDHSLNIYNPTEYYVVFAGLAV 181
Cdd:PRK15224 109 QWVCIKAVPPENEPSDTQAKGATLDLNLSInvcdKLIFRPDAVKGTPEDVAGNLRWVETGNKLKVENPTPFYMNLASVTV 188

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 16131035  182 DKTDLTSkIEYIAPGEHKQLPLPASGGKNVKWAAINDYGGSS 223
Cdd:PRK15224 189 GGKPITG-LEYIPPFADKTLNMPGSAHGDIEWRVITDFGGES 229
PRK15188 PRK15188
fimbrial chaperone protein BcfB; Provisional
 21-223 6.64e-35

fimbrial chaperone protein BcfB; Provisional


Pssm-ID: 185110 [Multi-domain]  Cd Length: 228  Bit Score: 124.10  E-value: 6.64e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035   21 ALAGGIVLQRTRVIYDASRKEAALPVANKGAETPYLLQSWVDNIDGKSRAPFIITPPLFRLEAGDDSSLRIIKTADNLPE 100
Cdd:PRK15188  24 AQAGGIALGATRVIYPQGSKQTSLPIINSSASNVFLIQSWVANADGSRSTDFIITPPLFVIQPKKENILRIMYVGPSLPT 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035  101 NKESLFYINVRAIPAKKKsDDVNANELTLVFKTRIKMFYRPAHLKGRVNDAWKSLEFKRSDHSLNIYNPTEYYVVFAGLA 180
Cdd:PRK15188 104 DRESVFYLNSKAIPSVDK-NKLTGNSLQIATQSVIKLFIRPKNLAEAPAHAPSTLRCRNERGQLTITNPSPYYVSMVELY 182

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 16131035  181 VDKTDLTSKIeyIAPgeHKQLPLPASGGKnVKWAAINDYGGSS 223
Cdd:PRK15188 183 SAGKKLPNTM--VPP--KGAITLPATPGQ-VSLRTVNDFGATT 220
PRK15254 PRK15254
fimbrial chaperone protein StdC; Provisional
 20-221 1.54e-33

fimbrial chaperone protein StdC; Provisional


Pssm-ID: 185166 [Multi-domain]  Cd Length: 239  Bit Score: 120.65  E-value: 1.54e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035   20 QALAGGIVLQRTRVIYDASRKEAALPVANKGAETPYLLQSWVDNIDGKSRAPFIITPPLFRLEAGDDSSLRIIKT---AD 96
Cdd:PRK15254  12 QYSPAAVNVDRTRIIMDAPQKTVAITLNNDDKTTPFLAQSWVTDADGVRTDALMALPPLQRIDAGQKSQVRITQVrglTD 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035   97 NLPENKESLFYINVRAIPAKKKSDDVnaneLTLVFKTRIKMFYRP-AHLKGRVNDAWKSLEFKRSDHSLNIYNPTEYYVV 175
Cdd:PRK15254  92 KLPQDRETLFWFNVRGVPPKPEDDNV----LQLAMQSQLKLFYRPkAIIRSSSDQPERKLTAERNAGHLTLRNPTPYYIT 167

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 16131035  176 FAGLAVDKTD-LTSKIEYIAPGEHKQLPLPA--SGGKNVKWAA-INDYGG 221
Cdd:PRK15254 168 VAWLGADRSHrLSGFREGVMVPPLGSLPLKAvlPAETRTLWVGyIDDYGG 217
PRK15246 PRK15246
fimbrial assembly chaperone;
28-223 1.18e-32

fimbrial assembly chaperone;


Pssm-ID: 185158 [Multi-domain]  Cd Length: 233  Bit Score: 118.14  E-value: 1.18e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035   28 LQRTRVIYDASRKEAALPVANKgAETPYLLQSWVD--NIDG---KSRAPFIITPPLFRLEAGDDSSLRIIKTA-DNLPEN 101
Cdd:PRK15246  14 IDRTRIIFASDDVAQSLTLSND-NTTPMLLQVWTDagNIDAspdNSKTPLVALPPVFKMQPGELRTLRLLLSSrQQLATD 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035  102 KESLFYINVRAIPAKKKSDDVNANELTLVFKTRIKMFYRPAHLKGRVNDAWKSLEFKRSDHSLNIYNPTEYYVVFAgLAV 181
Cdd:PRK15246  93 RESLFWLNIYQIPPVTQDIKNHPRKLVLPLRLRLKILIRPTGLKAPTEAEEKKLRFIAKENTIRIVNPTSWYMSLT-LTM 171

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 16131035  182 DKTDLTSKIeYIAPGEHKQLPLPAS--GGKNVKWAAINDYGGSS 223
Cdd:PRK15246 172 DNKKSIGDI-MVAPKTALDVPLTRSptPGASINYAVINDSGNWR 214
PRK15253 PRK15253
putative fimbrial assembly chaperone protein StcB; Provisional
 8-220 3.75e-32

putative fimbrial assembly chaperone protein StcB; Provisional


Pssm-ID: 185165 [Multi-domain]  Cd Length: 242  Bit Score: 117.07  E-value: 3.75e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035    8 VILTLLCSFCIGQALAGgIVLQRTRVIYDASRKEAALPVANKGaETPYLLQSWVDniDG-------KSRAPFIITPPLFR 80
Cdd:PRK15253  18 ILSAVLLSAIILPAHAG-IVIYGTRVIYPAEKKEVVVQLVNQG-EQASLVQSWID--DGntslppeKIQVPFMLTPPVAR 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035   81 LEAGDDSSLRIIKTADNLPENKESLFYINVRAIPAKKKSDDvNANELTLVFKTRIKMFYRPAHLKGRVNDAWKSLEFKRS 160
Cdd:PRK15253  94 VAAESGQQIKIKKMPNSLPDNKESLFYLNVLDIPPNSQENA-GKNVLKFAMQNRIKLIWRPSRIAAVTKDSFQRIGLFRS 172

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035  161 DHSLNIYNPTEYYVVFAGLAVDKTDLTSKIEYIAPGEHKQLPLPASGGKNVKWAAINDYG 220
Cdd:PRK15253 173 NKTVIMKNDTANWITVTDVKAGNTKINDQTIMLPPLSTQNINMKYASTSQYEVTIIDDNG 232
PRK15249 PRK15249
fimbrial chaperone;
21-220 9.92e-31

fimbrial chaperone;


Pssm-ID: 237930 [Multi-domain]  Cd Length: 253  Bit Score: 113.74  E-value: 9.92e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035   21 ALAGGIVLQRTRVIYDASRKEAALPVANKGAeTPYLLQSWVDNIDGKSR------APFIITPPLFRLEAGDDSSLRIIKT 94
Cdd:PRK15249  25 ASWASVTILGSRIIYPSTASSVDVQLKNNDA-IPYIVQTWFDDGDMNTSpenssaMPFIATPPVFRIQPKAGQVVRVIYN 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035   95 ADN-LPENKESLFYINVRAIPAKKKSDDVNANELTLVFKTRIKMFYRPAHLkGRVNDAWKSLEFK-----RSDHSLNIYN 168
Cdd:PRK15249 104 NTKkLPQDRESVFWFNVLQVPPTNIGSDSGQNKMLVMLRSRIKLFYRPDGL-GKPDNLAKKLQIKtvnkgSGKSGIVIVN 182

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 16131035  169 PTEYYVVFAGLA--VDKTDLTSKIEYIAPGEHKQLPLPA-----SGGKNVKWAAINDYG 220
Cdd:PRK15249 183 PQPWFASLSNLNvkVNGASYNLDADMIAPFSSQTWWLPGkrslkSFSGTVTVTLVNDQG 241
PRK15285 PRK15285
fimbrial chaperone StfD;
7-221 1.22e-28

fimbrial chaperone StfD;


Pssm-ID: 185185 [Multi-domain]  Cd Length: 250  Bit Score: 108.33  E-value: 1.22e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035    7 AVILTLLCSFCIGQAlagGIVLQRTRVIYDASRKEAALPVANKGAETPYLLQSWVDNIDG-KSRAPFIITPPLFRLEAGD 85
Cdd:PRK15285  11 AVLLLLLGGYGSAQA---AIAPDRTRLVFRGEDKSISVDLKNANSKLPYLAQSWVEDEKGvKITSPLIVVPPVQRIEPSA 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035   86 DSSLRI--IKTADNLPENKESLFYINVRAIPAkkKSDdvNANELTLVFKTRIKMFYRPAHL-KGRVNDAWK-SLEFKRSD 161
Cdd:PRK15285  88 IGQVKIqgMPALASLPQDRETLFYYNVREIPP--QSD--KPNTLQIALQTRIKVFYRPQALsKIDMQHPWQyKITLQRQG 163

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16131035  162 HSLNIYNPTEYYVVFAGlAVDKTDLTSKIEY----IAPGEHKQLPLPASG-GKNVKWAAINDYGG 221
Cdd:PRK15285 164 NGYQVSNPTGYYVVLSN-ASNRMDGTPARGFsplvIAPKSNVTLGGDASElGHSPVLTYVNDYGA 227
PRK15274 PRK15274
putative periplasmic fimbrial chaperone protein SteC; Provisional
 25-221 7.43e-28

putative periplasmic fimbrial chaperone protein SteC; Provisional


Pssm-ID: 185177 [Multi-domain]  Cd Length: 257  Bit Score: 106.40  E-value: 7.43e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035   25 GIVLQRTRVIYDASRKEAALPVANKGAETPYLLQSWV-DNIDGKSRAPFIITPPLFRLEAGDDSSLRI--IKTADNLPEN 101
Cdd:PRK15274  27 AIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLeDDKFAKDTRYFTALPPLQRIEPKSDGQVKVqpLPAAASLPQD 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035  102 KESLFYINVRAIPAkkKSDdvNANELTLVFKTRIKMFYRPAHLKGRVNDA--WKS-LEFKRSDHSLNIYNPTEYYVVFAG 178
Cdd:PRK15274 107 RESLFYFNVREIPP--KSD--KPNTLQLALQTRIKFFYRPVAVARQVDKThpWQTkLTLTYQGDGVIFDNPTPFYLVISN 182

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 16131035  179 LAVDKTDLTSKIE--YIAPGEHKQLPLP-ASGGKNVKWAAINDYGG 221
Cdd:PRK15274 183 AGSKENETASGFKnlLIAPREKVTSPIKgASLGSSPVVGYVDDYGG 228
PRK15192 PRK15192
pili/flagellar-assembly chaperone;
24-220 2.83e-27

pili/flagellar-assembly chaperone;


Pssm-ID: 185114 [Multi-domain]  Cd Length: 234  Bit Score: 104.40  E-value: 2.83e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035   24 GGIVLQRTRVIYDASRKEAALPVANKgAETPYLLQS-------WVDNIDGKSRAPFIITPPLFRLEAGDDSSLRIIKTAD 96
Cdd:PRK15192  22 AGVVIGGTRFIYHAGAPALSVPVSNH-SEASWLIDThilpggrWPGTKNEGNITPFVVTPPLFMLSARQENSMRVVYTGA 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035   97 NLPENKESLFYINVRAIPAKKKSddvnANELTLVFKTRIKMFYRPAHLKGRVNDAWKSLEFKRSDHSLNIYNPTEYYVVF 176
Cdd:PRK15192 101 PLPADRESLFTLSIAAIPSGKPE----ANRVQMAFRSALKLLYRPEGLAGNPQQAYRHLIWSLTPDGATVRNPTPYYVTL 176

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 16131035  177 AGLAVDKTdLTSKIEYIAPGEHKQLPLPASGGK-NVKWAAINDYG 220
Cdd:PRK15192 177 FLLRANER-AQDNAGVVAPFATRQTDWCRHTVRcTVRWQSINDYG 220
PRK15218 PRK15218
fimbrial assembly chaperone;
13-195 1.65e-26

fimbrial assembly chaperone;


Pssm-ID: 185140 [Multi-domain]  Cd Length: 226  Bit Score: 101.98  E-value: 1.65e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035   13 LCSFCIGQALAGGIVLQRTRVIYDASRKEAALPVANKGAETPyLLQSWVDNIDG-----KSRAPFIITPPLFRLEAGDDS 87
Cdd:PRK15218   7 LCLACAAMPAWSGIYIYGTRIIYPAQKKDITVQLMNDGKRSS-LIQAWIDNGDTslppeKLQVPFIMTPPVIRVAANSGQ 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035   88 SLRIIKTADNLPENKESLFYINVRAIPAKKKSDDvNANELTLVFKTRIKMFYRPAHLKGRVNDAWKSLEFKRSDHSLNIY 167
Cdd:PRK15218  86 QLKIKKLANNLPGDRESLFYLNVLDIPPNSDENK-DKNIIKFALQNRIKLIYRPPGVQKVDKATFSRLQLLRAPGSISVK 164

                        170       180
                 ....*....|....*....|....*...
gi 16131035  168 NPTEYYVVFAGLaVDKTDLTSKIEYIAP 195
Cdd:PRK15218 165 NNSANWITIPEI-KAKSKVNKETLLLAP 191
PRK15233 PRK15233
fimbrial chaperone SefB;
25-202 3.99e-25

fimbrial chaperone SefB;


Pssm-ID: 185149 [Multi-domain]  Cd Length: 246  Bit Score: 99.03  E-value: 3.99e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035   25 GIVLQRTRVIYDASRKEAALPVANKgAETPYLLQSWVDNIDGKSRAPFIITPPLFRLEAGDDSSLRIIKTADNLPENKES 104
Cdd:PRK15233  41 GLRLGTTRVIYKEDAPSTSFWIMNE-KEYPILVQTQVYNDDKSSKAPFIVTPPILKVESNARTRLKVIPTSNLFNKNEES 119

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035  105 LFYINVRAIPAKKKSDDVNANELT------LVFKTRIKMFYRPAHLKGRVNDAWKSLEFKRSDHSLNIYNPTEYYVVFAG 178
Cdd:PRK15233 120 LYWLCVKGVPPLNDNESNNKNNITtnlnvnVVTNSCIKLIYRPKTIDLTTMEIADKLKLERKGNSIVIKNPTSSYVNIAN 199

                        170       180
                 ....*....|....*....|....
gi 16131035  179 LAVDKTDLTSKIEYIAPGEHKQLP 202
Cdd:PRK15233 200 IKSGNLSFNIPNGYIEPFGYAQLP 223
PRK09918 PRK09918
putative fimbrial chaperone protein; Provisional
 1-231 5.02e-25

putative fimbrial chaperone protein; Provisional


Pssm-ID: 236632 [Multi-domain]  Cd Length: 230  Bit Score: 98.19  E-value: 5.02e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035    1 MSKRTFAVILTLLCSFCIGQALAGGIVLQRTRVIYDASRKEAALPVANKGAEtPYLLQSWVDNIDGKSRAPFIITPPLFR 80
Cdd:PRK09918   1 NRFNLFFLFTALVLLSSSSAVHAAGMVPETSVVIVEESDGEGSINVKNTDSN-PILLYTTLVDLPEDKSKLLLVTPPVAR 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035   81 LEAGDDSSLRIIKTADNlPENKESLFYINVRAIPAKKKsddvNANELTLVFKTRIKMFYRPAHLKgRVNDAWKSLEFKRS 160
Cdd:PRK09918  80 VEPGQSQQVRFILKSGS-PLNTEHLLRVSFEGVPPKPG----GKNKVVMPIRQDLPVLIQPAALP-VVRDPWKLLVWSIS 153

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16131035  161 DHSLNIYNPTEyYVVFAGLAVdkTDLTSKIE------YIAPGEHKQLPL--PASGGKNVKWAAINDYGGSSGTETRPLQ 231
Cdd:PRK09918 154 GNNLVVSNPSP-YVVRLGQQV--ILLPSGKVvalpkpYILPGESLTVAItnSKATDTKVRFFPASRYGFVVPSYTAPLT 229
PRK11385 PRK11385
fimbrial chaperone;
6-230 9.10e-25

fimbrial chaperone;


Pssm-ID: 183112 [Multi-domain]  Cd Length: 236  Bit Score: 97.90  E-value: 9.10e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035    6 FAVILTLLCSFCIGQALAGGIVLQRTRVIYDASRKEAALPVANKGAETpYLLQS-------WVDNIDGKSRAPFIITPPL 78
Cdd:PRK11385   8 LALLIFAVLSLLVAGELQAGVVVGGTRFIFPADRESISILLTNTSQES-WLINSkinrptrWAGGEASTVPAPLLAAPPL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035   79 FRLEAGDDSSLRIIKT-ADNLPENKESLFYINVRAIPAKKksddVNANELTLVFKTRIKMFYRPAHLKGRVNDAWKSLEF 157
Cdd:PRK11385  87 ILLKPGTTGTLRLLRTeSDILPVDRETLFELSIASVPSGK----VENQSVKVAMRSVFKLFWRPEGLPGDPLEAYQQLRW 162

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16131035  158 KRSDHSLNIYNPTEYYVVFAGLAVDKTDLtSKIEYIAPGEHKQLP-LPASGGKNVKWAAINDYGGSSGTETRPL 230
Cdd:PRK11385 163 TRNSQGVQLTNPTPYYINLIQVSVNGKAL-SNAGVVPPKSQRQTSwCQAIAPCHVAWRAINDYGGLSAKKEQNL 235
PapD_C pfam02753
Pili assembly chaperone PapD, C-terminal domain; Ig-like beta-sandwich fold. This domain is ...
 168-223 1.46e-10

Pili assembly chaperone PapD, C-terminal domain; Ig-like beta-sandwich fold. This domain is the C-terminal part of the pilus and flagellar-assembly chaperone protein PapD.


Pssm-ID: 426960 [Multi-domain]  Cd Length: 63  Bit Score: 55.35  E-value: 1.46e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131035   168 NPTEYYVVFAGLAVDKTDLTSKIE--YIAPGEHKQLPLPA--SGGKNVKWAAINDYGGSS 223
Cdd:pfam02753   3 NPTPYYVTFSSLSLGGGGKELALDpgMVAPFSSQTFAGLPapAAGGTVSYTYINDYGGIV 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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