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Conserved domains on  [gi|16131172|ref|NP_417752|]
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DUF1992 domain-containing protein YhdN [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

DUF1992 domain-containing protein( domain architecture ID 10013457)

DUF1992 domain-containing protein similar to Escherichia coli YhdN

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK10203 PRK10203
hypothetical protein; Provisional
1-122 1.40e-80

hypothetical protein; Provisional


:

Pssm-ID: 182303  Cd Length: 122  Bit Score: 232.24  E-value: 1.40e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131172    1 MWLLDQWAERHIAEAQAKGEFDNLAGSGEPLILDDDSHVPPELRAGYRLLKNAGCLPPELEQRREAIQLLDILKGIRHDD 80
Cdd:PRK10203   1 MWLLDQWAERHILEAQRKGEFDNLPGSGEPLILDDDSHVPPELRAGYRLLKNAGCLPPELEQRREAIQLLDLLKGIREDD 80
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 16131172   81 PQYQEVSRRLSLLELKLRQAGLSTDFLRGDYADKLLDKINDN 122
Cdd:PRK10203  81 PQYQEVSRRLSLLELKLRQAGLSTDFLRGDYADKLLNKINDN 122
 
Name Accession Description Interval E-value
PRK10203 PRK10203
hypothetical protein; Provisional
1-122 1.40e-80

hypothetical protein; Provisional


Pssm-ID: 182303  Cd Length: 122  Bit Score: 232.24  E-value: 1.40e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131172    1 MWLLDQWAERHIAEAQAKGEFDNLAGSGEPLILDDDSHVPPELRAGYRLLKNAGCLPPELEQRREAIQLLDILKGIRHDD 80
Cdd:PRK10203   1 MWLLDQWAERHILEAQRKGEFDNLPGSGEPLILDDDSHVPPELRAGYRLLKNAGCLPPELEQRREAIQLLDLLKGIREDD 80
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 16131172   81 PQYQEVSRRLSLLELKLRQAGLSTDFLRGDYADKLLDKINDN 122
Cdd:PRK10203  81 PQYQEVSRRLSLLELKLRQAGLSTDFLRGDYADKLLNKINDN 122
DJC28_CD pfam09350
DnaJ homolog, subfamily C, member 28, conserved domain; This domain is found in proteins that ...
7-74 3.75e-24

DnaJ homolog, subfamily C, member 28, conserved domain; This domain is found in proteins that may have a role in protein folding or as a chaperone, including DnaJ homolog subfamily C member 28. DnaJ is a member of the J-protein family (also known as HSP40), which are defined by the presence of a J domain that regulate the activity of 70kDa heat-shock proteins. The function of this domain is not yet known.


Pssm-ID: 462766  Cd Length: 72  Bit Score: 87.60  E-value: 3.75e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16131172     7 WAERHIAEAQAKGEFDNLAGSGEPLILDDDS----HVPPELRAGYRLLKNAGCLPPELEQRREAIQLLDILK 74
Cdd:pfam09350   1 LAERRIREAIERGEFDNLPGRGKPLPLDDDSehnpFVPEELRMANRILKNAGVLPPWIELRKEIERLIELLR 72
 
Name Accession Description Interval E-value
PRK10203 PRK10203
hypothetical protein; Provisional
1-122 1.40e-80

hypothetical protein; Provisional


Pssm-ID: 182303  Cd Length: 122  Bit Score: 232.24  E-value: 1.40e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131172    1 MWLLDQWAERHIAEAQAKGEFDNLAGSGEPLILDDDSHVPPELRAGYRLLKNAGCLPPELEQRREAIQLLDILKGIRHDD 80
Cdd:PRK10203   1 MWLLDQWAERHILEAQRKGEFDNLPGSGEPLILDDDSHVPPELRAGYRLLKNAGCLPPELEQRREAIQLLDLLKGIREDD 80
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 16131172   81 PQYQEVSRRLSLLELKLRQAGLSTDFLRGDYADKLLDKINDN 122
Cdd:PRK10203  81 PQYQEVSRRLSLLELKLRQAGLSTDFLRGDYADKLLNKINDN 122
DJC28_CD pfam09350
DnaJ homolog, subfamily C, member 28, conserved domain; This domain is found in proteins that ...
7-74 3.75e-24

DnaJ homolog, subfamily C, member 28, conserved domain; This domain is found in proteins that may have a role in protein folding or as a chaperone, including DnaJ homolog subfamily C member 28. DnaJ is a member of the J-protein family (also known as HSP40), which are defined by the presence of a J domain that regulate the activity of 70kDa heat-shock proteins. The function of this domain is not yet known.


Pssm-ID: 462766  Cd Length: 72  Bit Score: 87.60  E-value: 3.75e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16131172     7 WAERHIAEAQAKGEFDNLAGSGEPLILDDDS----HVPPELRAGYRLLKNAGCLPPELEQRREAIQLLDILK 74
Cdd:pfam09350   1 LAERRIREAIERGEFDNLPGRGKPLPLDDDSehnpFVPEELRMANRILKNAGVLPPWIELRKEIERLIELLR 72
PLN03085 PLN03085
nucleobase:cation symporter-1; Provisional
8-99 2.16e-07

nucleobase:cation symporter-1; Provisional


Pssm-ID: 215566  Cd Length: 221  Bit Score: 47.29  E-value: 2.16e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131172    8 AERHIAEAQAKGEFDNLAGSGEPLILDDDSHVPPELRAGYRLLKNAGCLPP--EL--EQRREAIQLLDILKG-----IRH 78
Cdd:PLN03085  93 VEQRIWHSMEEGHFENLPGKGKPLNLSTNPHADPAEDTLYRILSKNGCAPEwvELnkEIRGQINEWRSALKKawanrCEG 172
                         90       100
                 ....*....|....*....|.
gi 16131172   79 DDPQYQEVSRrlsLLELKLRQ 99
Cdd:PLN03085 173 DDSQWIEDSR---LLQEQLRQ 190
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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