NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|16131266|ref|NP_417847|]
View 

cell division protein DamX [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

cell division protein DamX( domain architecture ID 11485075)

cell division protein DamX is a SPOR domain-containing protein that binds to the septal ring and interacts with multiple Fts proteins, including FtsQ and FtsN

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK10905 PRK10905
cell division protein DamX; Validated
 105-428 0e+00

cell division protein DamX; Validated


:

Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 529.89  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266  105 MMGVGILVLLLLIIGIGSALKAPSTTSSDQTASGEKSIDLAGNATDQANGVQPAPGTTSAE----NTQQDVSLPPISSTP 180
Cdd:PRK10905   1 MMGVGILVLLLLIIGIGSALKAPSTSSSDQTASGEKSIDLAGNATDQANGVQPAPGTTSAEqtagNTQQDVSLPPISSTP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266  181 TQGQTPVATDGQQRVEVQGDLNNALTQPQNQQQLNNVAVNSTLPTEPATVAPVRNGNASRDTAKTQTAERPSTTRPARQQ 260
Cdd:PRK10905  81 TQGQTPVATDGQQRVEVQGDLNNALTQPQNQQQLNNVAVNSTLPTEPATVAPVRNGNASRQTAKTQTAERPATTRPARKQ 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266  261 AVIEPKKPQATVKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTATPAAGAKTAGNVGSL 340
Cdd:PRK10905 161 AVIEPKKPQATAKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTATPAAGGKTAGNVGSL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266  341 KSAPSSHYTLQLSSSSNYDNLNGWAKKENLKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPADVQAKNPWAKPL 420
Cdd:PRK10905 241 KSAPSSHYTLQLSSSSNYDNLNGWAKKENLKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPADVQAKNPWAKPL 320


                 ....*...
gi 16131266  421 RQVQADLK 428
Cdd:PRK10905 321 HQVQADLK 328
 
Name Accession Description Interval E-value
PRK10905 PRK10905
cell division protein DamX; Validated
 105-428 0e+00

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 529.89  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266  105 MMGVGILVLLLLIIGIGSALKAPSTTSSDQTASGEKSIDLAGNATDQANGVQPAPGTTSAE----NTQQDVSLPPISSTP 180
Cdd:PRK10905   1 MMGVGILVLLLLIIGIGSALKAPSTSSSDQTASGEKSIDLAGNATDQANGVQPAPGTTSAEqtagNTQQDVSLPPISSTP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266  181 TQGQTPVATDGQQRVEVQGDLNNALTQPQNQQQLNNVAVNSTLPTEPATVAPVRNGNASRDTAKTQTAERPSTTRPARQQ 260
Cdd:PRK10905  81 TQGQTPVATDGQQRVEVQGDLNNALTQPQNQQQLNNVAVNSTLPTEPATVAPVRNGNASRQTAKTQTAERPATTRPARKQ 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266  261 AVIEPKKPQATVKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTATPAAGAKTAGNVGSL 340
Cdd:PRK10905 161 AVIEPKKPQATAKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTATPAAGGKTAGNVGSL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266  341 KSAPSSHYTLQLSSSSNYDNLNGWAKKENLKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPADVQAKNPWAKPL 420
Cdd:PRK10905 241 KSAPSSHYTLQLSSSSNYDNLNGWAKKENLKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPADVQAKNPWAKPL 320


                 ....*...
gi 16131266  421 RQVQADLK 428
Cdd:PRK10905 321 HQVQADLK 328
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 223-428 1.33e-39

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 147.69  E-value: 1.33e-39
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266 223 LPTEPATVAPVRNGNASRDTAKTQTAERPSTTRPARQQAVIEPKKPQATVKTEPKPVAQTPKRTEPA---APVASTKAPA 299
Cdd:COG3266 249 LIIGSALKAPSQASSASAPATTSLGEQQEVSLPPAVAAQPAAAAAAQPSAVALPAAPAAAAAAAAPAeaaAPQPTAAKPV 328

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266 300 ATSTPAPKETATTAPVQTASPAqttaTPAAGAKTAGNVGSLKSAPSSHYTLQLSSSSNYDNLNGWAKKENLK-NYVVYET 378
Cdd:COG3266 329 VTETAAPAAPAPEAAAAAAAPA----APAVAKKLAADEQWLASQPASHYTLQLLGASSEAALEAFAAKHSLKgNLWVYPT 404

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|
gi 16131266 379 TRNGQPWYVLVSGVYASKEEAKKAVSTLPADVQAKNPWAKPLRQVQADLK 428
Cdd:COG3266 405 TRNGKPWYVVVYGSYASRAEAKAAVAALPAELRASKPWVRSIAQVQQELK 454
SPOR pfam05036
SPOR domain; Bacterial SPOR domains bind peptidoglycan (PG) and target proteins to the cell ...
 344-419 8.40e-10

SPOR domain; Bacterial SPOR domains bind peptidoglycan (PG) and target proteins to the cell division site by binding to denuded glycan strands that lack stem peptides. This 70 residue domain is composed of two 35 residue repeats found in proteins involved in sporulation and cell division such as FtsN, DedD, and CwlM. This domain is involved in binding peptidoglycan. Two tandem repeats fold into a pseudo-2-fold symmetric single-domain structure containing numerous contacts between the repeats. FtsN is an essential cell division protein with a simple bitopic topology, a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. These repeats lay at the periplasmic C-terminus. FtsN localizes to the septum ring complex.


Pssm-ID: 461531 [Multi-domain]  Cd Length: 76  Bit Score: 55.06  E-value: 8.40e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16131266   344 PSSHYTLQLSSSSNYDNLNGWAKKENLKNYVVY-ETTRNGQPWYVLVSGVYASKEEAKKAVSTLPADVQaKNPWAKP 419
Cdd:pfam05036   1 ASGGYYVQLGAFSNEANAEALAAKLRAKGFAAYvAVTSKGGGLYRVRVGPFASREEARAALKKLKALAG-LSPFVVK 76
 
Name Accession Description Interval E-value
PRK10905 PRK10905
cell division protein DamX; Validated
 105-428 0e+00

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 529.89  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266  105 MMGVGILVLLLLIIGIGSALKAPSTTSSDQTASGEKSIDLAGNATDQANGVQPAPGTTSAE----NTQQDVSLPPISSTP 180
Cdd:PRK10905   1 MMGVGILVLLLLIIGIGSALKAPSTSSSDQTASGEKSIDLAGNATDQANGVQPAPGTTSAEqtagNTQQDVSLPPISSTP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266  181 TQGQTPVATDGQQRVEVQGDLNNALTQPQNQQQLNNVAVNSTLPTEPATVAPVRNGNASRDTAKTQTAERPSTTRPARQQ 260
Cdd:PRK10905  81 TQGQTPVATDGQQRVEVQGDLNNALTQPQNQQQLNNVAVNSTLPTEPATVAPVRNGNASRQTAKTQTAERPATTRPARKQ 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266  261 AVIEPKKPQATVKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTATPAAGAKTAGNVGSL 340
Cdd:PRK10905 161 AVIEPKKPQATAKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTATPAAGGKTAGNVGSL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266  341 KSAPSSHYTLQLSSSSNYDNLNGWAKKENLKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPADVQAKNPWAKPL 420
Cdd:PRK10905 241 KSAPSSHYTLQLSSSSNYDNLNGWAKKENLKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPADVQAKNPWAKPL 320


                 ....*...
gi 16131266  421 RQVQADLK 428
Cdd:PRK10905 321 HQVQADLK 328
PRK11901 PRK11901
hypothetical protein; Reviewed
 1-428 2.73e-75

hypothetical protein; Reviewed


Pssm-ID: 237015 [Multi-domain]  Cd Length: 327  Bit Score: 238.04  E-value: 2.73e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266    1 MDEFKPEDELKPDPSDRRtgrsrqssersertergepqinfddielddtddrrptraqkerneepeieeeidesedetvd 80
Cdd:PRK11901   1 MDEFKPEDELKPDTSDRR-------------------------------------------------------------- 18

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266   81 eervERRPRKRKKAASKPASRQYMMMGVGILVLLLLIIGIGSALKAPS---TTSSDQTASGEKSIDLAG----------- 146
Cdd:PRK11901  19 ----PTRSRKSSNGPKLAVSRQHMMIGIGILVLLLLIIAIGSALKSPTeheSQQSSNNAGAEKNIDLSGssslssgnqss 94

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266  147 NATDQANGVQPAPGTTSAENTQQDVSLPPISSTPTQGQTPVATDGQQRVEVQGDLNNALTQPQN---QQQLNNVAVNSTL 223
Cdd:PRK11901  95 PSAANNTSDGHDASGVKNTAPPQDISAPPISPTPTQAAPPQTPNGQQRIELPGNISDALSQQQGqvnAASQNAQGNTSTL 174

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266  224 PTEPATVAPVRngnasrdtaktqtaerpsttrparqqaviepKKPQATVKTEPKPVAQTPKRTEPAApvASTKAPAATST 303
Cdd:PRK11901 175 PTAPATVAPSK-------------------------------GAKVPATAETHPTPPQKPATKKPAV--NHHKTATVAVP 221

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266  304 PAPKetatTAPVQTASPAqttatpaagaktagnvGSLKSAPSSHYTLQLSSSSNYDNLNGWAKKENLKNYVVYETTRNGQ 383
Cdd:PRK11901 222 PATS----GKPKSGAASA----------------RALSSAPASHYTLQLSSASRSDTLNAYAKKQNLSHYHVYETKRDGK 281

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....*
gi 16131266  384 PWYVLVSGVYASKEEAKKAVSTLPADVQAKNPWAKPLRQVQADLK 428
Cdd:PRK11901 282 PWYVLVSGNYASSAEAKRAIATLPAEVQAKKPWVKPVQQVQQDLK 326
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 223-428 1.33e-39

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 147.69  E-value: 1.33e-39
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266 223 LPTEPATVAPVRNGNASRDTAKTQTAERPSTTRPARQQAVIEPKKPQATVKTEPKPVAQTPKRTEPA---APVASTKAPA 299
Cdd:COG3266 249 LIIGSALKAPSQASSASAPATTSLGEQQEVSLPPAVAAQPAAAAAAQPSAVALPAAPAAAAAAAAPAeaaAPQPTAAKPV 328

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266 300 ATSTPAPKETATTAPVQTASPAqttaTPAAGAKTAGNVGSLKSAPSSHYTLQLSSSSNYDNLNGWAKKENLK-NYVVYET 378
Cdd:COG3266 329 VTETAAPAAPAPEAAAAAAAPA----APAVAKKLAADEQWLASQPASHYTLQLLGASSEAALEAFAAKHSLKgNLWVYPT 404

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|
gi 16131266 379 TRNGQPWYVLVSGVYASKEEAKKAVSTLPADVQAKNPWAKPLRQVQADLK 428
Cdd:COG3266 405 TRNGKPWYVVVYGSYASRAEAKAAVAALPAELRASKPWVRSIAQVQQELK 454
SPOR pfam05036
SPOR domain; Bacterial SPOR domains bind peptidoglycan (PG) and target proteins to the cell ...
 344-419 8.40e-10

SPOR domain; Bacterial SPOR domains bind peptidoglycan (PG) and target proteins to the cell division site by binding to denuded glycan strands that lack stem peptides. This 70 residue domain is composed of two 35 residue repeats found in proteins involved in sporulation and cell division such as FtsN, DedD, and CwlM. This domain is involved in binding peptidoglycan. Two tandem repeats fold into a pseudo-2-fold symmetric single-domain structure containing numerous contacts between the repeats. FtsN is an essential cell division protein with a simple bitopic topology, a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. These repeats lay at the periplasmic C-terminus. FtsN localizes to the septum ring complex.


Pssm-ID: 461531 [Multi-domain]  Cd Length: 76  Bit Score: 55.06  E-value: 8.40e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16131266   344 PSSHYTLQLSSSSNYDNLNGWAKKENLKNYVVY-ETTRNGQPWYVLVSGVYASKEEAKKAVSTLPADVQaKNPWAKP 419
Cdd:pfam05036   1 ASGGYYVQLGAFSNEANAEALAAKLRAKGFAAYvAVTSKGGGLYRVRVGPFASREEARAALKKLKALAG-LSPFVVK 76
DedD COG3147
Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, ...
 268-406 1.51e-06

Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442381 [Multi-domain]  Cd Length: 140  Bit Score: 47.46  E-value: 1.51e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266 268 PQATVKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPAPKetattaPVQTASPAQTTATPAAGAKTAGnvgslksapSSH 347
Cdd:COG3147   1 PAEEAAAAPAAAAAPAAPAAAAAPAPAAAAAAAAPKPAAK------PAAPKPAAAAAAAPAAKAAAPA---------GGG 65

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16131266 348 YTLQLSSSSNYDNLNGWAKKENLKNYVVY--ETTRNGQPWYVLVSGVYASKEEAKKAVSTL 406
Cdd:COG3147  66 WVVQLGAFSNEDNAKELVAKLRAAGYPAYtePVTTGGGTLYRVRVGPFASRAEAEAALAKL 126
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 251-336 7.63e-06

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 48.35  E-value: 7.63e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266   251 PSTTRPARQQAVIEPKKPQATVKTEPKPVAQTPKRTEPAAPV--ASTKAPAATSTPAPKETATTAPVQTASPAQTTATPA 328
Cdd:PRK12270   43 APTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPkpAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTPLRG 122


                  ....*...
gi 16131266   329 AGAKTAGN 336
Cdd:PRK12270  123 AAAAVAKN 130
FtsN COG3087
Cell division protein FtsN [Cell cycle control, cell division, chromosome partitioning];
238-406 8.63e-06

Cell division protein FtsN [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442321 [Multi-domain]  Cd Length: 198  Bit Score: 46.54  E-value: 8.63e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266 238 ASRDTAKTQTAERPSTTRPARQQAVIEPKKPQATVKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPAPKETATTAPVQT 317
Cdd:COG3087  15 LLLELSAEAAAAASDNLRLAAGSAAAPALAEDALVASAAKAGLAETGAKAGAILAAAALAALNAAAAALAAASAAAAAAA 94

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266 318 ASPAQTTATPAAGAKTAGNVGSLKSAPSSHYTLQLSSSSNYDNLNGWAKKENLKNYVVY--ETTRNGQPWYVLVSGVYAS 395
Cdd:COG3087  95 APAAAAAEAAAAPAGMAKKEAAAAPAAKKPYYVQVGAFRSRANAERLRARLALLGLEARvvEVEVGGGTWYRVRVGPFSS 174

                       170
                ....*....|.
gi 16131266 396 KEEAKKAVSTL 406
Cdd:COG3087 175 RAEAEKAREKL 185
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 255-331 1.01e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 44.88  E-value: 1.01e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16131266   255 RPARQQAVIEPKKPQATVKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTATPAAGA 331
Cdd:PRK12270   37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAV 113
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 268-344 1.11e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 44.50  E-value: 1.11e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16131266   268 PQATVKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTATPAAGAKTAGNVGSLKSAP 344
Cdd:PRK12270   48 AAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTPLRGAA 124
PHA03247 PHA03247
large tegument protein UL36; Provisional
 157-335 2.08e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.77  E-value: 2.08e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266   157 PAPGTTSAENTQQDVSLPPISSTPTQGQTPVA-----------TDGQQRVEVQGDLNNALTQPQNQQQLNNVAVNSTLPT 225
Cdd:PHA03247 2656 PAPGRVSRPRRARRLGRAAQASSPPQRPRRRAarptvgsltslADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPAL 2735

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266   226 EPATVAPVRNGNASRDTAKTQTAERPSTTRPARQQAVIEPKKPQATVKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPA 305
Cdd:PHA03247 2736 PAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPA 2815

                         170       180       190
                  ....*....|....*....|....*....|
gi 16131266   306 PKETATTAPVqTASPAQTTATPAAGAKTAG 335
Cdd:PHA03247 2816 AALPPAASPA-GPLPPPTSAQPTAPPPPPG 2844
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 261-334 6.00e-04

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 41.98  E-value: 6.00e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16131266  261 AVIEPKKPQATVKTEPKPVAQTPKrtEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTATPAAGAKTA 334
Cdd:PTZ00144 107 DTVEVGAPLSEIDTGGAPPAAAPA--AAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPP 178
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 227-326 6.27e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 42.18  E-value: 6.27e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266   227 PATVAPVRNGNASRDTAKTQTAERPSTTRPARQQAviepKKPQATVKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPAP 306
Cdd:PRK12270   39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPA----PPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVE 114

                          90       100
                  ....*....|....*....|....*..
gi 16131266   307 KET-------ATTAPVQTASPAQTTAT 326
Cdd:PRK12270  115 DEVtplrgaaAAVAKNMDASLEVPTAT 141
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 267-334 6.38e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 42.18  E-value: 6.38e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16131266   267 KPQATVKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTATPAAGAKTA 334
Cdd:PRK12270   37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAA 104
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 222-340 6.69e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 42.10  E-value: 6.69e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266  222 TLPTEPATVAPVRNGNASRDTAKTqTAERPSTTRPARqqAVIEPKKPQATVKTEPKPVAQTPKRTEPAAPVASTKAPAAT 301
Cdd:PRK14950 348 QLPLELAVIEALLVPVPAPQPAKP-TAAAPSPVRPTP--APSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHT 424

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 16131266  302 STPAPKETATTAPVQTASPAQTTATPAAGAKTAGNVGSL 340
Cdd:PRK14950 425 PESAPKLTRAAIPVDEKPKYTPPAPPKEEEKALIADGDV 463
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
224-344 7.41e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 41.76  E-value: 7.41e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266  224 PTEPATVAPVRNGNASRDTAKTQTAERPSTTRPARQQAVIEPKKPQATVKTEPKPVAQTPKRTEPAAPVASTKAPAATST 303
Cdd:PRK07003 368 PGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDA 447

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 16131266  304 PAPKETATTAPVQTASPAQTTATPAAGAKTAGNVGSLKSAP 344
Cdd:PRK07003 448 PVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDA 488
PHA03247 PHA03247
large tegument protein UL36; Provisional
 157-332 8.66e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.85  E-value: 8.66e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266   157 PAPGTTSAENTQQDVS---LPPISSTPTQGQTPVATDGQQRVEVQGDLNNALTQPQNQQQLNNVAVNSTLPTEPATVAPV 233
Cdd:PHA03247 2702 PPPPPTPEPAPHALVSatpLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPR 2781

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266   234 RNGNASRDTAKTQTAERPSTTRPARQQAVIEPKKPQATVKTEPKPVAQTPKRTEPAAPvASTKAPAATSTPAPKETATTA 313
Cdd:PHA03247 2782 RLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAP-PPPPGPPPPSLPLGGSVAPGG 2860

                         170       180
                  ....*....|....*....|
gi 16131266   314 PVQTASPAQTT-ATPAAGAK 332
Cdd:PHA03247 2861 DVRRRPPSRSPaAKPAAPAR 2880
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 267-354 1.00e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 41.24  E-value: 1.00e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266  267 KPQATVKTEPKPVAQTPKRTEP----AAPVASTKAPAATSTPAPKET-ATTAPVQTASPAQTTATPAAGAKTAGNVGSLK 341
Cdd:PRK14951 365 KPAAAAEAAAPAEKKTPARPEAaapaAAPVAQAAAAPAPAAAPAAAAsAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAA 444

                         90
                 ....*....|...
gi 16131266  342 SAPSSHYTLQLSS 354
Cdd:PRK14951 445 VALAPAPPAQAAP 457
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 251-346 1.01e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.51  E-value: 1.01e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266  251 PSTTRPARQQAVIEPKKPQATVKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTATPAAG 330
Cdd:PRK07764 394 PAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAA 473

                         90
                 ....*....|....*.
gi 16131266  331 AKTAGNVGSLKSAPSS 346
Cdd:PRK07764 474 PEPTAAPAPAPPAAPA 489
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 261-323 1.22e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 40.82  E-value: 1.22e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16131266  261 AVIEPKKPQATVKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQT 323
Cdd:PTZ00144 128 APAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRET 190
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 218-351 1.34e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.12  E-value: 1.34e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266  218 AVNSTLPTEPATVAPVRNGNASRDTAKTQTAERPSTTRPARQQAVIEPKKPQATVKTEPKPVAQTPKRTEPAAPVASTKA 297
Cdd:PRK07764 380 RLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPA 459

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 16131266  298 PAATSTPAPKETATTAPVQTASPAQTTATPAAGAKTAGNVGSLKSAPSSHYTLQ 351
Cdd:PRK07764 460 AAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLR 513
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
224-335 1.75e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 40.63  E-value: 1.75e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266  224 PTEPATVAPVRNGNASRDTAKTQTAERPSTTRPARQQAVIEPKKPQATVKTEPKPVAQTPKRTEPAAPVASTKAPAATST 303
Cdd:PRK12323 376 TAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPA 455

                         90       100       110
                 ....*....|....*....|....*....|..
gi 16131266  304 PAPKETATTAPVQTASPAQTTATPAAGAKTAG 335
Cdd:PRK12323 456 AAPAAAARPAAAGPRPVAAAAAAAPARAAPAA 487
pylS PRK09537
pyrrolysine--tRNA(Pyl) ligase;
245-325 1.94e-03

pyrrolysine--tRNA(Pyl) ligase;


Pssm-ID: 236555 [Multi-domain]  Cd Length: 417  Bit Score: 40.21  E-value: 1.94e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266  245 TQTAERPSTTRparqqaVIEPKKPQATVKTEPKPVAQTPKRTEPAAPvasTKAPAATSTPAPKETATTAPVQTASPAQTT 324
Cdd:PRK09537  84 TKTFEDKTQVK------VKVVSAPTKKKKAMPKSVVRAPKPLENPVP---AQAESSGSKPVPSIPVSTPEVKAPAPALTP 154


                 .
gi 16131266  325 A 325
Cdd:PRK09537 155 S 155
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 251-334 2.08e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 40.64  E-value: 2.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266   251 PSTTRPARQQAVIEPKKPQATVKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTATPAAG 330
Cdd:PRK12270   22 PNSVDPSWREFFADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPA 101


                  ....
gi 16131266   331 AKTA 334
Cdd:PRK12270  102 AAAA 105
PRK11633 PRK11633
cell division protein DedD; Provisional
 218-318 2.33e-03

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 39.22  E-value: 2.33e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266  218 AVNSTLPTEP--ATVAPVRNGNASrdtaktqtaerPSTTRPARQQAVIEPKKPQATVKTEPKPVAQTPKRTEPAAPVAST 295
Cdd:PRK11633  58 AATQALPTQPpeGAAEAVRAGDAA-----------APSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVE 126

                         90       100
                 ....*....|....*....|...
gi 16131266  296 KAPAATSTPAPKETATTAPVQTA 318
Cdd:PRK11633 127 APPAPKPEPKPVVEEKAAPTGKA 149
PRK13808 PRK13808
adenylate kinase; Provisional
 204-332 3.35e-03

adenylate kinase; Provisional


Pssm-ID: 172341 [Multi-domain]  Cd Length: 333  Bit Score: 39.49  E-value: 3.35e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266  204 ALTQPQNQQQLNNVAVNSTLPTEPATVAPVRNGNASRDTAKTQTAERPSTtRPARQQAVIEPKKPQATVKTEPKPVAQTP 283
Cdd:PRK13808 193 AVGAANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAA-KTAAKAAKKAKKTAKKALKKAAKAVKKAA 271

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 16131266  284 KRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTA-TPAAGAK 332
Cdd:PRK13808 272 KKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAkAPKRGAK 321
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 159-334 4.74e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 39.08  E-value: 4.74e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266  159 PGTTSAENTQQDVSLPPISSTPTQGQTPVATDGQQRVEVQgdlnnaltQPQNQQQLNNVAVNSTLPTEPATVAPVrNGNA 238
Cdd:PRK07994 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVP--------PPPASAPQQAPAVPLPETTSQLLAARQ-QLQR 431

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266  239 SRDTAKTQTAERPSTTRPARQQAVIEPkkpQATVKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPApketattAPVQTA 318
Cdd:PRK07994 432 AQGATKAKKSEPAAASRARPVNSALER---LASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVA-------TPKALK 501

                        170
                 ....*....|....*.
gi 16131266  319 SPAQTTATPAAGAKTA 334
Cdd:PRK07994 502 KALEHEKTPELAAKLA 517
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 265-335 5.49e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 39.10  E-value: 5.49e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16131266   265 PKKPQATVKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTATPAAGAKTAG 335
Cdd:PRK12270   39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPA 109
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 217-335 5.73e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.20  E-value: 5.73e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266  217 VAVNSTLPTEPATVAPVRNGNASRDTAKTQTAERPSTTRPARQQAVIEPKKPQATVKTEPKPVAQTPKRTEPAAPVASTK 296
Cdd:PRK07764 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQP 466

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 16131266  297 APAATSTPAPKETATTAPVQTASPAQTTATPAAGAKTAG 335
Cdd:PRK07764 467 APAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAG 505
PHA03247 PHA03247
large tegument protein UL36; Provisional
 88-354 5.81e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.15  E-value: 5.81e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266    88 PRKRKKAASKPASRQYMMMGVGILVLLLLIIGIGSALKAPSTTSSDQTASGEKSIDLAGNATDQANGVQPAPGTTSAENT 167
Cdd:PHA03247 2741 PPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPP 2820

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266   168 QQDVSLP--------PISSTPTQGQTPVATDGQQRVEVQGDLNNALTQPQNqqqlnnvavnstlPTEPATVAPVRNGNAS 239
Cdd:PHA03247 2821 AASPAGPlppptsaqPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSP-------------AAKPAAPARPPVRRLA 2887

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266   240 RDTAKTQT---AERPSTTRPARQQAVIEPKKPQATVKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPAPKETA----TT 312
Cdd:PHA03247 2888 RPAVSRSTesfALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQpwlgAL 2967

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 16131266   313 APVQTASPAQTTATPAAGAKTAgnvGSLKSAPSSHYTLQLSS 354
Cdd:PHA03247 2968 VPGRVAVPRFRVPQPAPSREAP---ASSTPPLTGHSLSRVSS 3006
PRK10856 PRK10856
cytoskeleton protein RodZ;
241-329 6.15e-03

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 38.47  E-value: 6.15e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266  241 DTAKTQTAERPSTTRPARQQAVIEPKkPQATVKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASP 320
Cdd:PRK10856 166 TSTTTDPATTPAPAAPVDTTPTNSQT-PAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGV 244


                 ....*....
gi 16131266  321 AQTTATPAA 329
Cdd:PRK10856 245 STPAADPNA 253
PRK12757 PRK12757
cell division protein FtsN; Provisional
 245-343 6.16e-03

cell division protein FtsN; Provisional


Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 38.10  E-value: 6.16e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266  245 TQTAERP--STTRPARQQAVIEPKKPQATvktepkPVAQTPKRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASPA- 321
Cdd:PRK12757 100 TQLSEVPynEQTPQVPRSTVQIQQQAQQQ------QPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAp 173

                         90       100
                 ....*....|....*....|..
gi 16131266  322 QTTATPAAGAKTAGNVGSLKSA 343
Cdd:PRK12757 174 KVEAEKEKEQRWMVQCGSFKGT 195
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 218-331 6.20e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 38.93  E-value: 6.20e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266  218 AVNSTLPTEPATVA-PVRNGNASRDTAKTQTAERPSTTRPARQQAVIEPKKPQATVKTEPkPVAQTPKRTEPAAPVASTK 296
Cdd:PRK14951 369 AAEAAAPAEKKTPArPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAA-PAAAAPAAAPAAAPAAVAL 447

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 16131266  297 APAATSTPAPKETATTAPVQTASPAQTTATPAAGA 331
Cdd:PRK14951 448 APAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAA 482
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
235-346 7.55e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 38.70  E-value: 7.55e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266  235 NGNASRDTAKTQTAERPSTTRPARQQAVIEPKKPQATVKTEPK------PVAQTPKRTEPA--APVASTKAPAATSTPAP 306
Cdd:PRK12323 369 GGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAaaaaarAVAAAPARRSPApeALAAARQASARGPGGAP 448

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 16131266  307 KETATTAPVqtasPAQTTATPAAGAKTAGNVGSLKSAPSS 346
Cdd:PRK12323 449 APAPAPAAA----PAAAARPAAAGPRPVAAAAAAAPARAA 484
valS PRK14900
valyl-tRNA synthetase; Provisional
 237-345 8.40e-03

valyl-tRNA synthetase; Provisional


Pssm-ID: 237855 [Multi-domain]  Cd Length: 1052  Bit Score: 38.43  E-value: 8.40e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266   237 NASRDTAKTQTAERPSTTRPARQQAVIEPKKPQATVKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPAPketattAPVQ 316
Cdd:PRK14900  910 SARRDTMEIQNEQKPTQDGPAAEAQPAQENTVVESAEKAVAAVSEAAQQAATAVASGIEKVAEAVRKTVR------RSVK 983

                          90       100
                  ....*....|....*....|....*....
gi 16131266   317 TASpaqttATPAAGAKTAGNVGSLKSAPS 345
Cdd:PRK14900  984 KAA-----ATRAAMKKKVAKKAPAKKAAA 1007
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
223-346 8.76e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 38.68  E-value: 8.76e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266  223 LPTEPATV---APVRNGNASRDTAKTQTAERPSTTRPARQQAVIEPKKPQATVKTEPKPVAQTPKRTEPAAPVASTKAPA 299
Cdd:PRK07003 356 LAFEPAVTgggAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPAT 435

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 16131266  300 ATSTPAPKETATTAPVQTASPAQTTATPAAGAKTAGNVGSLKSAPSS 346
Cdd:PRK07003 436 ADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPAS 482
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 248-331 9.07e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 38.16  E-value: 9.07e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266  248 AERPSTTRPARQQAVIEPKKPQATVKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTATP 327
Cdd:PRK14951 363 AFKPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAP 442


                 ....
gi 16131266  328 AAGA 331
Cdd:PRK14951 443 AAVA 446
PHA03247 PHA03247
large tegument protein UL36; Provisional
 224-344 9.64e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 38.38  E-value: 9.64e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131266   224 PTEPATVAPVRngnasrDTAKTQTAERPSTTRP-ARQQAVIEPKKPQATVKTEPKPVAQT---PKRTEPAAPVASTK--A 297
Cdd:PHA03247 2686 RAARPTVGSLT------SLADPPPPPPTPEPAPhALVSATPLPPGPAAARQASPALPAAPappAVPAGPATPGGPARpaR 2759

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 16131266   298 PAATSTPApketATTAPVQTASPAQTTATPAAGAKTAGNVGSLKSAP 344
Cdd:PHA03247 2760 PPTTAGPP----APAPPAAPAAGPPRRLTRPAVASLSESRESLPSPW 2802
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH