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Conserved domains on  [gi|16131323|ref|NP_417908|]
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sn-glycerol 3-phosphate ABC transporter membrane subunit UgpE [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

sn-glycerol-3-phosphate ABC transporter permease UgpE( domain architecture ID 10793514)

sn-glycerol-3-phosphate ABC transporter permease UgpE is part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10973 PRK10973
sn-glycerol-3-phosphate ABC transporter permease UgpE;
1-281 2.11e-177

sn-glycerol-3-phosphate ABC transporter permease UgpE;


:

Pssm-ID: 182875 [Multi-domain]  Cd Length: 281  Bit Score: 490.02  E-value: 2.11e-177
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131323    1 MIENRPWLTIFSHTMLILGIAVILFPLYVAFVAATLDKQAVYAAPMTLIPGTHLLENIHNIWVNGVGTNSAPFWRMLLNS 80
Cdd:PRK10973   1 MIENRRGLDIFSHTMLILGIAVILFPLYVAFVAATLDKQAVFAVPMTLIPGTHLLENIANIWVNGVGNNSAPFGRMLLNS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131323   81 FVMAFSITLGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLQMLDSYAGLTLPLMASATATF 160
Cdd:PRK10973  81 FVMAFSITVGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDSYAGLTLPLMASATATF 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131323  161 LFRQFFMTLPDELVEAARIDGASPMRFFCDIVFPLSKTNLAALFVITFIYGWNQYLWPLLIITDVDLGTTVAGIKGMIAT 240
Cdd:PRK10973 161 LFRQFFMTLPDELVEAARIDGASPMRFFWDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIITDVSLGTAVAGIKGMIAT 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 16131323  241 GEGTTEWNSVMVAMLLTLIPPVVIVLVMQRAFVRGLVDSEK 281
Cdd:PRK10973 241 GEGTTEWNQVMAAMLLTLIPPVVIVLAMQRAFVRGLVDSEK 281
 
Name Accession Description Interval E-value
PRK10973 PRK10973
sn-glycerol-3-phosphate ABC transporter permease UgpE;
1-281 2.11e-177

sn-glycerol-3-phosphate ABC transporter permease UgpE;


Pssm-ID: 182875 [Multi-domain]  Cd Length: 281  Bit Score: 490.02  E-value: 2.11e-177
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131323    1 MIENRPWLTIFSHTMLILGIAVILFPLYVAFVAATLDKQAVYAAPMTLIPGTHLLENIHNIWVNGVGTNSAPFWRMLLNS 80
Cdd:PRK10973   1 MIENRRGLDIFSHTMLILGIAVILFPLYVAFVAATLDKQAVFAVPMTLIPGTHLLENIANIWVNGVGNNSAPFGRMLLNS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131323   81 FVMAFSITLGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLQMLDSYAGLTLPLMASATATF 160
Cdd:PRK10973  81 FVMAFSITVGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDSYAGLTLPLMASATATF 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131323  161 LFRQFFMTLPDELVEAARIDGASPMRFFCDIVFPLSKTNLAALFVITFIYGWNQYLWPLLIITDVDLGTTVAGIKGMIAT 240
Cdd:PRK10973 161 LFRQFFMTLPDELVEAARIDGASPMRFFWDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIITDVSLGTAVAGIKGMIAT 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 16131323  241 GEGTTEWNSVMVAMLLTLIPPVVIVLVMQRAFVRGLVDSEK 281
Cdd:PRK10973 241 GEGTTEWNQVMAAMLLTLIPPVVIVLAMQRAFVRGLVDSEK 281
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 5-277 8.94e-82

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 247.70  E-value: 8.94e-82
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131323   5 RPWLTIFSHTMLILGIAVILFPLYVAFVAATLDKQAVYAAPMTLIPGTHLLENIHNIWvngvgtNSAPFWRMLLNSFVMA 84
Cdd:COG0395  10 RRLGRILLYLLLILLALLFLFPLYWMVVTSFKPPAEIFSGPPSLLPSEFTLENYRAAF------TDGPFGRYLLNSLIVA 83

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131323  85 FSITLGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLQMLDSYAGLTLPLMA--SATATFLF 162
Cdd:COG0395  84 VVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAfgLPFGIFLL 163

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131323 163 RQFFMTLPDELVEAARIDGASPMRFFCDIVFPLSKTNLAALFVITFIYGWNQYLWPLLIITDVDLGTTVAGIKGMIatGE 242
Cdd:COG0395 164 RQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASFQ--GQ 241

                       250       260       270
                ....*....|....*....|....*....|....*
gi 16131323 243 GTTEWNSVMVAMLLTLIPPVVIVLVMQRAFVRGLV 277
Cdd:COG0395 242 YGTDWGLLMAAAVIATLPVLILFLFLQRYFVRGLT 276
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 96-276 4.93e-14

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 68.86  E-value: 4.93e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131323    96 MLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFP--TVEVIANLQMLDSYAGLTLPLMASATATFLFRQFFMTLPDEL 173
Cdd:pfam00528   3 PLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILlvVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131323   174 VEAARIDGASPMRFFCDIVFPLSKTNLAALFVITFIYGWNQYLWPLLIITDVDLGTTVAgikgMIATGEGTTEWNSVMVA 253
Cdd:pfam00528  83 VEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLI----EAILGYDYPEIQGPVLA 158

                         170       180
                  ....*....|....*....|...
gi 16131323   254 MLLTLIPPVVIVLVMQRAFVRGL 276
Cdd:pfam00528 159 AALILLLLNLLVDILQRLLDPRV 181
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 77-259 4.42e-13

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 66.15  E-value: 4.42e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131323  77 LLNSFVMAFSITLGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLQMLDSYAGLTLP----- 151
Cdd:cd06261   1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPalila 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131323 152 -LMASATATFLFRQFFMTLPDELVEAARIDGASPMRFFCDIVFPLSKTNLAALFVITFIYGWNQYLWPLLIITDVDLGTT 230
Cdd:cd06261  81 lLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                       170       180
                ....*....|....*....|....*....
gi 16131323 231 VAGIKGMIATGEGTTEWNSVMVAMLLTLI 259
Cdd:cd06261 161 TGLLLIFAILFPGDLGVAAAVALILLLLS 189
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 13-210 5.40e-03

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 38.12  E-value: 5.40e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131323    13 HTMLILGIAVILFpLYVAFVAATLDKQAVYAAPMTLIPGTHLLENIhniwvngvgtNSAPFWRMLLNSFVMAFSITLGKI 92
Cdd:TIGR03262   3 ARLLLAGMILALL-LFLLLPLLALLTKSVYDSDGDFIGLANFAEYF----------ATPGLLQSLGNSLTVSAIVTAIVV 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131323    93 TVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVE------VRIFPTVEVIANLQMLDSYAGLTLPLMASATATF-----L 161
Cdd:TIGR03262  72 PLAFAFAYALTRSRIPGKGAFRLVALLPLLAPSLlpaislIYLFGNQGLLKGLLGGFSIYGFWGIVIGEVFYTFphalmI 151

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 16131323   162 FRQFFMTLPDELVEAARIDGASPMRFFCDIVFPLSKTNLAALFVITFIY 210
Cdd:TIGR03262 152 LVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTL 200
 
Name Accession Description Interval E-value
PRK10973 PRK10973
sn-glycerol-3-phosphate ABC transporter permease UgpE;
1-281 2.11e-177

sn-glycerol-3-phosphate ABC transporter permease UgpE;


Pssm-ID: 182875 [Multi-domain]  Cd Length: 281  Bit Score: 490.02  E-value: 2.11e-177
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131323    1 MIENRPWLTIFSHTMLILGIAVILFPLYVAFVAATLDKQAVYAAPMTLIPGTHLLENIHNIWVNGVGTNSAPFWRMLLNS 80
Cdd:PRK10973   1 MIENRRGLDIFSHTMLILGIAVILFPLYVAFVAATLDKQAVFAVPMTLIPGTHLLENIANIWVNGVGNNSAPFGRMLLNS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131323   81 FVMAFSITLGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLQMLDSYAGLTLPLMASATATF 160
Cdd:PRK10973  81 FVMAFSITVGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDSYAGLTLPLMASATATF 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131323  161 LFRQFFMTLPDELVEAARIDGASPMRFFCDIVFPLSKTNLAALFVITFIYGWNQYLWPLLIITDVDLGTTVAGIKGMIAT 240
Cdd:PRK10973 161 LFRQFFMTLPDELVEAARIDGASPMRFFWDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIITDVSLGTAVAGIKGMIAT 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 16131323  241 GEGTTEWNSVMVAMLLTLIPPVVIVLVMQRAFVRGLVDSEK 281
Cdd:PRK10973 241 GEGTTEWNQVMAAMLLTLIPPVVIVLAMQRAFVRGLVDSEK 281
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 5-277 8.94e-82

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 247.70  E-value: 8.94e-82
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131323   5 RPWLTIFSHTMLILGIAVILFPLYVAFVAATLDKQAVYAAPMTLIPGTHLLENIHNIWvngvgtNSAPFWRMLLNSFVMA 84
Cdd:COG0395  10 RRLGRILLYLLLILLALLFLFPLYWMVVTSFKPPAEIFSGPPSLLPSEFTLENYRAAF------TDGPFGRYLLNSLIVA 83

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131323  85 FSITLGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLQMLDSYAGLTLPLMA--SATATFLF 162
Cdd:COG0395  84 VVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAfgLPFGIFLL 163

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131323 163 RQFFMTLPDELVEAARIDGASPMRFFCDIVFPLSKTNLAALFVITFIYGWNQYLWPLLIITDVDLGTTVAGIKGMIatGE 242
Cdd:COG0395 164 RQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASFQ--GQ 241

                       250       260       270
                ....*....|....*....|....*....|....*
gi 16131323 243 GTTEWNSVMVAMLLTLIPPVVIVLVMQRAFVRGLV 277
Cdd:COG0395 242 YGTDWGLLMAAAVIATLPVLILFLFLQRYFVRGLT 276
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 9-276 3.21e-34

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 125.26  E-value: 3.21e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131323   9 TIFSHTMLILGIAVILFPLYVAFVAATLDKQAVYaaPMTLIPGTHLLENIHNIWvngvgtNSAPFWRMLLNSFVMAFSIT 88
Cdd:COG3833  15 LGLRHLVLIILAIIALFPILWVVSASFNPGGSLY--SSSLIPENFTLENYKKLF------TETPFLRWFLNSLIVAVVTA 86

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131323  89 LGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLQMLDSYAGLTLPLMASATA--TFLFRQFF 166
Cdd:COG3833  87 IISVFLAALAAYAFSRFRFKGRKAGLLALLLLQMFPAFLALVALYLLLSALGLLNTLLGLILVYLGGAIPfnTWLMKGYF 166

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131323 167 MTLPDELVEAARIDGASPMRFFCDIVFPLSKTNLAALFVITFIYGWNQYLWPLLIITDVDLGTTVAGIKGMIaTGEGTTE 246
Cdd:COG3833 167 DTIPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALLSFIGPWNDFILASVLLRSPENYTLAVGLYSFV-SDQRNTN 245

                       250       260       270
                ....*....|....*....|....*....|
gi 16131323 247 WNSVMVAMLLTLIPPVVIVLVMQRAFVRGL 276
Cdd:COG3833 246 WGVFAAGAVLVAIPIVILFLFLQRYLVSGL 275
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 96-276 4.93e-14

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 68.86  E-value: 4.93e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131323    96 MLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFP--TVEVIANLQMLDSYAGLTLPLMASATATFLFRQFFMTLPDEL 173
Cdd:pfam00528   3 PLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILlvVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131323   174 VEAARIDGASPMRFFCDIVFPLSKTNLAALFVITFIYGWNQYLWPLLIITDVDLGTTVAgikgMIATGEGTTEWNSVMVA 253
Cdd:pfam00528  83 VEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLI----EAILGYDYPEIQGPVLA 158

                         170       180
                  ....*....|....*....|...
gi 16131323   254 MLLTLIPPVVIVLVMQRAFVRGL 276
Cdd:pfam00528 159 AALILLLLNLLVDILQRLLDPRV 181
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 77-259 4.42e-13

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 66.15  E-value: 4.42e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131323  77 LLNSFVMAFSITLGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLQMLDSYAGLTLP----- 151
Cdd:cd06261   1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPalila 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131323 152 -LMASATATFLFRQFFMTLPDELVEAARIDGASPMRFFCDIVFPLSKTNLAALFVITFIYGWNQYLWPLLIITDVDLGTT 230
Cdd:cd06261  81 lLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                       170       180
                ....*....|....*....|....*....
gi 16131323 231 VAGIKGMIATGEGTTEWNSVMVAMLLTLI 259
Cdd:cd06261 161 TGLLLIFAILFPGDLGVAAAVALILLLLS 189
malG PRK10998
maltose ABC transporter permease MalG;
5-276 1.35e-12

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 66.66  E-value: 1.35e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131323    5 RPWLTifsHTMLILGIAVILFPLYVAfVAATLDKQAVyaAPMTLIPGTHLLEniHNIWVNGVGTNSA---------PFWR 75
Cdd:PRK10998  12 RLFAT---HLLLLGFIALIMFPLLMV-IAISLREGNF--ATGSLIPEQISWE--HWKLALGFSVEHAdgrvtpppfPVLL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131323   76 MLLNSFVMAFSITLGKITVSMLSAFAIVWFRFPLRN------LFFWMIFITLMLPVEVRIFPTVEVIANLQMLDSYAGLT 149
Cdd:PRK10998  84 WLWNSVKVAGITAIGIVALSTTCAYAFARMRFKGKAtllkgmLIFQMFPAVLSLVALYALFDRLGQYIPFIGLNTHGGVI 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131323  150 LPLMAS-ATATFLFRQFFMTLPDELVEAARIDGASPMRFFCDIVFPLSKTNLAALFVITFIYGWNQYLWPLLIITDVDLG 228
Cdd:PRK10998 164 FAYLGGiALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRDVNSY 243

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 16131323  229 TTVAGIKGMIAtgEGTTEWNSVMVAMLLTLIPPVVIVLVMQRAFVRGL 276
Cdd:PRK10998 244 TLAVGMQQYLN--PQNYLWGDFAAAAVLSAIPITVVFLLAQRWLVGGL 289
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
73-210 8.57e-11

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 62.10  E-value: 8.57e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131323  73 FWRMLLNSFVMAFSITLGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEV------RIFPTVEVIANLqmLDSYA 146
Cdd:COG1178  52 LWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVvalawiALFGPNGLLNTL--LRALF 129

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16131323 147 GLTLPLMASAT-------------ATFLFRQFFMTLPDELVEAARIDGASPMRFFCDIVFPLSKTNLAALFVITFIY 210
Cdd:COG1178 130 GLEPPDIYGLGgiilvlvlfnypyVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLL 206
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 69-215 8.55e-09

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 55.12  E-value: 8.55e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131323  69 NSAPFWRMLLNSFVMAFSITLGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLQMLDSYAGL 148
Cdd:COG1177  55 SDPRLLDALLNSLLIALLSTLLATVLGTPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGL 134

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16131323 149 TLP--LMASATATFLFRQFFMTLPDELVEAARIDGASPMRFFCDIVFPLSKTNLAALFVITFIYGWNQY 215
Cdd:COG1177 135 ILAhvVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEF 203
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
5-209 1.32e-06

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 49.39  E-value: 1.32e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131323   5 RPWLTIFSHTMLILGIAVILFPLYVAFVAATldkqavyaapMTLIPGTHLLENIHNIWVNGVgtnsapFWRMLLNSFVMA 84
Cdd:COG1178 284 GRWRWLALALCLLLVLLGLLLPLLALLLWSL----------TKALDDNLTLDNYRFVLLDPS------LLRALLNSLLLA 347

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131323  85 FSITLGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPvevrifPTVEVIANLQMLDSYAGL----TLPLMASATA-- 158
Cdd:COG1178 348 LLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVP------GIVLGLGLLLLFNRPLPLllygTLAILVLAYVvr 421

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 16131323 159 --TFLFRQF---FMTLPDELVEAARIDGASPMRFFCDIVFPLSKTNLAALFVITFI 209
Cdd:COG1178 422 flPFALRSLeaaLAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFV 477
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
73-215 9.75e-06

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 45.90  E-value: 9.75e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131323  73 FWRMLLNSFVMAFSITLGKITVSMLSAFaIVWFRFPLRNLFFWMIFITLMLPvevrifPTVEVIANLQMLDSYAGL---- 148
Cdd:COG1175  74 FWNALGNTLLFTVVSVPLQLVLGLLLAL-LLNRKLRGRGFFRTLFFLPWVIS------PVVVALIWKWLFNPDYGLlnal 146

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131323 149 --------------TLPLMASATATFLFRQF-FMTL---------PDELVEAARIDGASPMRFFCDIVFPLSKTNLAALF 204
Cdd:COG1175 147 lgalglepinwlgdPSLALPAVIIVTVWKGTgFNMLiflaglqsiPRELYEAARIDGASPWQRFRRITLPLLRPTILFVL 226

                       170
                ....*....|.
gi 16131323 205 VITFIYGWNQY 215
Cdd:COG1175 227 VLSTIGALQVF 237
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 73-209 1.13e-05

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 45.91  E-value: 1.13e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131323  73 FWRMLLNSFVMAFSITLgkitVSMLSAFAIVWF----RFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLQMLDS---Y 145
Cdd:COG1176  65 YLKVLLRTLWIALLTTL----ICLLLGYPIAYFlaraPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLLNSlllA 140

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131323 146 AGLT---LPLMASATATFL-FRQF---FMTLP---------DELVEAARIDGASPMRFFCDIVFPLSKTNLAALFVITFI 209
Cdd:COG1176 141 LGLIdepLRLLYTEFAVVIgLVYVylpFMVLPlyaalekidPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFI 220
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 13-210 5.40e-03

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 38.12  E-value: 5.40e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131323    13 HTMLILGIAVILFpLYVAFVAATLDKQAVYAAPMTLIPGTHLLENIhniwvngvgtNSAPFWRMLLNSFVMAFSITLGKI 92
Cdd:TIGR03262   3 ARLLLAGMILALL-LFLLLPLLALLTKSVYDSDGDFIGLANFAEYF----------ATPGLLQSLGNSLTVSAIVTAIVV 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131323    93 TVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVE------VRIFPTVEVIANLQMLDSYAGLTLPLMASATATF-----L 161
Cdd:TIGR03262  72 PLAFAFAYALTRSRIPGKGAFRLVALLPLLAPSLlpaislIYLFGNQGLLKGLLGGFSIYGFWGIVIGEVFYTFphalmI 151

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 16131323   162 FRQFFMTLPDELVEAARIDGASPMRFFCDIVFPLSKTNLAALFVITFIY 210
Cdd:TIGR03262 152 LVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTL 200
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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