|
Name |
Accession |
Description |
Interval |
E-value |
| XylH |
COG4214 |
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; |
18-393 |
3.55e-153 |
|
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443360 [Multi-domain] Cd Length: 393 Bit Score: 437.62 E-value: 3.55e-153
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 18 GFSGLKSLNLQVFVMIAAIIAIMLFFTWTTDGAYLSARNVSNLLRQTAITGILAVGMVFVIISAEIDLSVGSMMGLLGGV 97
Cdd:COG4214 13 SLRRLLGGDLRSLGMIIALVVIWIVFQILTGGTFLTPRNLSNLLLQNSYIGILAIGMVLVILLGHIDLSVGSVSGFVGAV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 98 AAICDVWLGWPLPLTIIVTLVLGLLLGAWNGWWVAYRKVPSFIVTLAGMLAFRGILIGITNGTTVSPTSAAMSQIGQSYL 177
Cdd:COG4214 93 AAVLMVNWGLPWWLAILAALLVGALIGAWQGFWVAYVGIPSFIVTLAGMLAFRGLTLLVLGGGTIAPFDPTFQAIGNGFL 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 178 P---ASTGFIIGALGLMAFVGWQWRGRMRRQALGLQSPASTAVVGRQALTAIIVLGAIWLLNDYRGVPTPVLLLTLLLLG 254
Cdd:COG4214 173 PdilGTLSWVLGAVAVAAYVALQLRSRRRRRRYGLPVEPLWLFVLKLALLAVLILGAVYLLNSYRGIPIVVLILLVLVVV 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 255 GMFMATRTAFGRRIYAIGGNLEAARLSGINVERTKLAVFAINGLMVAIAGLILSSRLGAGSPSAGNIAELDAIAACVIGG 334
Cdd:COG4214 253 YTFVLTRTVFGRHIYAVGGNPEAARLSGINVRRVTFSVFVNMGVLAALAGIVFAARLNSATPSAGTGFELDAIAAAVIGG 332
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 16131439 335 TSLAGGVGSVAGAVMGAFIMASLDNGMSMMDVPTFWQYIVKGAILLLAVWMDSATKRRS 393
Cdd:COG4214 333 TSLFGGVGTVYGAVIGALVMGSLNNGMSLLGVDSDWQQIVKGLVLLLAVAFDVLSRRRR 391
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
26-392 |
2.06e-112 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 333.27 E-value: 2.06e-112
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 26 NLQVFVMIAAIIAIMLFFTWTTDGAYLSARNVSNLLRQTAITGILAVGMVFVIISAEIDLSVGSMMGLLGGVAAICDVWL 105
Cdd:NF040906 1 NLRQYGMLIALVAIVVLFQILTGGILLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNW 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 106 GWPLPLTIIVTLVLGLLLGAWNGWWVAYRKVPSFIVTLAGMLAFRGILIGITNGTTVSPTSAAMSQIGQSYLPASTG--- 182
Cdd:NF040906 81 GMPWWLAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIGPFPDGFQKISSGFLPDLFGgtg 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 183 -----FIIGALGLMAFVGWQWRGRMRRQALGLQSPASTAVVGRQALTAIIVLGAIWLLNDYRGVPTPVLLLTLLLLGGMF 257
Cdd:NF040906 161 lhlltLLLGVLAAAALVWSQLRGRRRRIKYGLEVEPMALFIAKLVLIAAAILFFTYLLASYRGLPNVLIILGVLILVYSF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 258 MATRTAFGRRIYAIGGNLEAARLSGINVERTKLAVFAINGLMVAIAGLILSSRLGAGSPSAGNIAELDAIAACVIGGTSL 337
Cdd:NF040906 241 VTNRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASA 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 16131439 338 AGGVGSVAGAVMGAFIMASLDNGMSMMDVPTFWQYIVKGAILLLAVWMDSATKRR 392
Cdd:NF040906 321 SGGVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFDVYNKRK 375
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
64-386 |
2.85e-69 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 218.82 E-value: 2.85e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 64 TAITGILAVGMVFVIISAEIDLSVGSMMGLLGGVAAICDVWLGWPLPLTIIVTLVLGLLLGAWNGWWVAYRKVPSFIVTL 143
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 144 AGMLAFRGILIGITNGTTVSPTSAAMSQIGQSYLPASTGFIIGALGLMAFVGWqwrgrmrrqalglqspastavvgrqal 223
Cdd:cd06579 81 GTMFILRGLALLITGGRPISGLPPLFSFFLGGGLILGIPVPVLIALAVALVAW--------------------------- 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 224 taiivlgaiwllndyrgvptpvllltllllggmFMATRTAFGRRIYAIGGNLEAARLSGINVERTKLAVFAINGLMVAIA 303
Cdd:cd06579 134 ---------------------------------FLLRRTRFGRYLYAVGGNPEAARLSGINVRRVKILAYVLSGLLAGLA 180
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 304 GLILSSRLGAGSPSAGNIAELDAIAACVIGGTSLAGGVGSVAGAVMGAFIMASLDNGMSMMDVPTFWQYIVKGAILLLAV 383
Cdd:cd06579 181 GILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGLNLLGVSSFWQQIVKGAILLLAV 260
|
...
gi 16131439 384 WMD 386
Cdd:cd06579 261 ALD 263
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
51-390 |
2.29e-56 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 187.62 E-value: 2.29e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 51 YLSARNVSNLLRQTAITGILAVGMVFVIISAEIDLSVGSMMGLLGGVAAICdVWLGWPLPLTIIVTLVLGLLLGAWNGWW 130
Cdd:PRK09512 39 FFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASI-VGIEVNALVAVPAALALGAAIGAVTGVI 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 131 VAYRKVPSFIVTLAGMLAFRGILIGITNGTtvsptsaamsqigqsylPASTGFIIGALGLmafvGWQWRGRmrrqALGLQ 210
Cdd:PRK09512 118 VAKGKVQAFIATLVMMLLLRGVTMVYTDGS-----------------PINTGFTDNADLF----GWFGIGR----PLGIP 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 211 SPASTAVvgrqaltaiIVLGAIWllndyrgvptpvllltllllggmFMATRTAFGRRIYAIGGNLEAARLSGINVERTKL 290
Cdd:PRK09512 173 TPVWIMA---------IVFLAAW-----------------------YMLHHTRLGRYIYALGGNEAATRLSGINVNKVKI 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 291 AVFAINGLMVAIAGLILSSRLGAGSPSAGNIAELDAIAACVIGGTSLAGGVGSVAGAVMGAFIMASLDNGMSMMDVPTFW 370
Cdd:PRK09512 221 IVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYY 300
|
330 340
....*....|....*....|
gi 16131439 371 QYIVKGAILLLAVWMDSATK 390
Cdd:PRK09512 301 QMIVKAVVILLAVLVDNKKQ 320
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
56-383 |
9.27e-21 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 90.78 E-value: 9.27e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 56 NVSNLLRQTAITGILAVGMVFVI-ISAEIDLSVGSMMGLLGGVAAICDVWLGWPLPLTIIVTLVLGLLLGAWNGWWVAYR 134
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 135 KVPSFIVTLAGMLAFRGILIGITNGttvsptsaamsQIGQSYLPASTGFIIGALGLMAFVGWQWrgrmrrqalglqspas 214
Cdd:pfam02653 81 KINEVIITLLLNLAALGLALFLVTG-----------ILGGEGGTSGITGPSGFPGAFLSFAFAF---------------- 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 215 tavvgrQALTAIIVLGAIWLLndyrgvptpvllltllllggmfmATRTAFGRRIYAIGGNLEAARLSGINVERTKLAVFA 294
Cdd:pfam02653 134 ------IFLLALLLVLALWLL-----------------------LYRTKFGRALRAVGENEEAARAAGINVKKLKLLTFV 184
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 295 INGLMVAIAGLILSSRLGAGSPS-AGNIAELDAIAACVIGGTslaggvGSVAGAVMGAFIMASLDNGMSMM-DVPTFWQY 372
Cdd:pfam02653 185 ISGALAGLAGALLALYTGVVPPSnFGVGLGLDAIAAVVLGGA------GSPIGVVIGSLIIGLVQSLGLGAlGSPPELSL 258
|
330
....*....|.
gi 16131439 373 IVKGAILLLAV 383
Cdd:pfam02653 259 LVLGALLILVL 269
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| XylH |
COG4214 |
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; |
18-393 |
3.55e-153 |
|
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443360 [Multi-domain] Cd Length: 393 Bit Score: 437.62 E-value: 3.55e-153
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 18 GFSGLKSLNLQVFVMIAAIIAIMLFFTWTTDGAYLSARNVSNLLRQTAITGILAVGMVFVIISAEIDLSVGSMMGLLGGV 97
Cdd:COG4214 13 SLRRLLGGDLRSLGMIIALVVIWIVFQILTGGTFLTPRNLSNLLLQNSYIGILAIGMVLVILLGHIDLSVGSVSGFVGAV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 98 AAICDVWLGWPLPLTIIVTLVLGLLLGAWNGWWVAYRKVPSFIVTLAGMLAFRGILIGITNGTTVSPTSAAMSQIGQSYL 177
Cdd:COG4214 93 AAVLMVNWGLPWWLAILAALLVGALIGAWQGFWVAYVGIPSFIVTLAGMLAFRGLTLLVLGGGTIAPFDPTFQAIGNGFL 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 178 P---ASTGFIIGALGLMAFVGWQWRGRMRRQALGLQSPASTAVVGRQALTAIIVLGAIWLLNDYRGVPTPVLLLTLLLLG 254
Cdd:COG4214 173 PdilGTLSWVLGAVAVAAYVALQLRSRRRRRRYGLPVEPLWLFVLKLALLAVLILGAVYLLNSYRGIPIVVLILLVLVVV 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 255 GMFMATRTAFGRRIYAIGGNLEAARLSGINVERTKLAVFAINGLMVAIAGLILSSRLGAGSPSAGNIAELDAIAACVIGG 334
Cdd:COG4214 253 YTFVLTRTVFGRHIYAVGGNPEAARLSGINVRRVTFSVFVNMGVLAALAGIVFAARLNSATPSAGTGFELDAIAAAVIGG 332
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 16131439 335 TSLAGGVGSVAGAVMGAFIMASLDNGMSMMDVPTFWQYIVKGAILLLAVWMDSATKRRS 393
Cdd:COG4214 333 TSLFGGVGTVYGAVIGALVMGSLNNGMSLLGVDSDWQQIVKGLVLLLAVAFDVLSRRRR 391
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
26-392 |
2.06e-112 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 333.27 E-value: 2.06e-112
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 26 NLQVFVMIAAIIAIMLFFTWTTDGAYLSARNVSNLLRQTAITGILAVGMVFVIISAEIDLSVGSMMGLLGGVAAICDVWL 105
Cdd:NF040906 1 NLRQYGMLIALVAIVVLFQILTGGILLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNW 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 106 GWPLPLTIIVTLVLGLLLGAWNGWWVAYRKVPSFIVTLAGMLAFRGILIGITNGTTVSPTSAAMSQIGQSYLPASTG--- 182
Cdd:NF040906 81 GMPWWLAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIGPFPDGFQKISSGFLPDLFGgtg 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 183 -----FIIGALGLMAFVGWQWRGRMRRQALGLQSPASTAVVGRQALTAIIVLGAIWLLNDYRGVPTPVLLLTLLLLGGMF 257
Cdd:NF040906 161 lhlltLLLGVLAAAALVWSQLRGRRRRIKYGLEVEPMALFIAKLVLIAAAILFFTYLLASYRGLPNVLIILGVLILVYSF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 258 MATRTAFGRRIYAIGGNLEAARLSGINVERTKLAVFAINGLMVAIAGLILSSRLGAGSPSAGNIAELDAIAACVIGGTSL 337
Cdd:NF040906 241 VTNRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASA 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 16131439 338 AGGVGSVAGAVMGAFIMASLDNGMSMMDVPTFWQYIVKGAILLLAVWMDSATKRR 392
Cdd:NF040906 321 SGGVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFDVYNKRK 375
|
|
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
15-393 |
1.03e-86 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 265.82 E-value: 1.03e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 15 TSGGFSGLKSLNLQVFVMIAAIIAIMLFFTWTTDGaYLSARNVSNLLRQTAITGILAVGMVFVIISAEIDLSVGSMMGLL 94
Cdd:COG1172 4 TTTTARSLLRRLLPELGLLLALVLLLVVFSILSPG-FLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALS 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 95 GGVAAICDVWLGWPLPLTIIVTLVLGLLLGAWNGWWVAYRKVPSFIVTLAGMLAFRGILIGITNGTTVSPTSAAMSQIGQ 174
Cdd:COG1172 83 GVVAALLLVALGLPILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGLPDAFRALGQ 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 175 SYLpastgfiigalglmafvgwqwrgrmrrqaLGLQSPAstavvgrqALTAIIVLGAIWLLNdyrgvptpvllltllllg 254
Cdd:COG1172 163 GSL-----------------------------LGIPVPV--------LIALVVALVAWFLLR------------------ 187
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 255 gmfmatRTAFGRRIYAIGGNLEAARLSGINVERTKLAVFAINGLMVAIAGLILSSRLGAGSPSAGNIAELDAIAACVIGG 334
Cdd:COG1172 188 ------RTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNAGSGYELDAIAAVVIGG 261
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 16131439 335 TSLAGGVGSVAGAVMGAFIMASLDNGMSMMDVPTFWQYIVKGAILLLAVWMDSATKRRS 393
Cdd:COG1172 262 TSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRRRRR 320
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
64-386 |
2.85e-69 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 218.82 E-value: 2.85e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 64 TAITGILAVGMVFVIISAEIDLSVGSMMGLLGGVAAICDVWLGWPLPLTIIVTLVLGLLLGAWNGWWVAYRKVPSFIVTL 143
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 144 AGMLAFRGILIGITNGTTVSPTSAAMSQIGQSYLPASTGFIIGALGLMAFVGWqwrgrmrrqalglqspastavvgrqal 223
Cdd:cd06579 81 GTMFILRGLALLITGGRPISGLPPLFSFFLGGGLILGIPVPVLIALAVALVAW--------------------------- 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 224 taiivlgaiwllndyrgvptpvllltllllggmFMATRTAFGRRIYAIGGNLEAARLSGINVERTKLAVFAINGLMVAIA 303
Cdd:cd06579 134 ---------------------------------FLLRRTRFGRYLYAVGGNPEAARLSGINVRRVKILAYVLSGLLAGLA 180
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 304 GLILSSRLGAGSPSAGNIAELDAIAACVIGGTSLAGGVGSVAGAVMGAFIMASLDNGMSMMDVPTFWQYIVKGAILLLAV 383
Cdd:cd06579 181 GILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGLNLLGVSSFWQQIVKGAILLLAV 260
|
...
gi 16131439 384 WMD 386
Cdd:cd06579 261 ALD 263
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
51-390 |
2.29e-56 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 187.62 E-value: 2.29e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 51 YLSARNVSNLLRQTAITGILAVGMVFVIISAEIDLSVGSMMGLLGGVAAICdVWLGWPLPLTIIVTLVLGLLLGAWNGWW 130
Cdd:PRK09512 39 FFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASI-VGIEVNALVAVPAALALGAAIGAVTGVI 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 131 VAYRKVPSFIVTLAGMLAFRGILIGITNGTtvsptsaamsqigqsylPASTGFIIGALGLmafvGWQWRGRmrrqALGLQ 210
Cdd:PRK09512 118 VAKGKVQAFIATLVMMLLLRGVTMVYTDGS-----------------PINTGFTDNADLF----GWFGIGR----PLGIP 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 211 SPASTAVvgrqaltaiIVLGAIWllndyrgvptpvllltllllggmFMATRTAFGRRIYAIGGNLEAARLSGINVERTKL 290
Cdd:PRK09512 173 TPVWIMA---------IVFLAAW-----------------------YMLHHTRLGRYIYALGGNEAATRLSGINVNKVKI 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 291 AVFAINGLMVAIAGLILSSRLGAGSPSAGNIAELDAIAACVIGGTSLAGGVGSVAGAVMGAFIMASLDNGMSMMDVPTFW 370
Cdd:PRK09512 221 IVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYY 300
|
330 340
....*....|....*....|
gi 16131439 371 QYIVKGAILLLAVWMDSATK 390
Cdd:PRK09512 301 QMIVKAVVILLAVLVDNKKQ 320
|
|
| COG4158 |
COG4158 |
Predicted ABC-type sugar transport system, permease component [General function prediction ... |
27-393 |
1.91e-54 |
|
Predicted ABC-type sugar transport system, permease component [General function prediction only];
Pssm-ID: 443324 Cd Length: 334 Bit Score: 182.82 E-value: 1.91e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 27 LQVFVMIAAIIAIMLFFTWTTdGAYLSARNVSNLLRQTAITGILAVGMVFVIISAEIDLSVGSMMGLLGGVAAICDVWLG 106
Cdd:COG4158 27 LQAVGMLPVLILLCIGFELLT-PNFLTVQNLSNIARQASINIVLAAGMTFVILTGGIDLSVGSILAASAVVAVLVSLLPG 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 107 WPLpLTIIVTLVLGLLLGAWNGWWVAYRKVPSFIVTLAGMLAFRGILIGITNGTTVSPTSAAMSQIGQSYLpastgfiig 186
Cdd:COG4158 106 LGL-LGIPAALLVGLLFGLINGLLIAFLKLPPFIVTLGSLTALRGAARLLANGTTVFNPDLPFAWIGNGYL--------- 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 187 alglmAFVGWQwrgrmrrqalglqspastavvgrqALTAIIVLGAIWllndyrgvptpvllltllllggmFMATRTAFGR 266
Cdd:COG4158 176 -----LGIPWL------------------------VVIALAVVLASW-----------------------FILRRTVLGV 203
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 267 RIYAIGGNLEAARLSGINVERTKLAVFAINGLMVAIAGLILSSRL-GAGSPSAGNIAELDAIAACVIGGTSLAGGVGSVA 345
Cdd:COG4158 204 HIYAVGGNAQAARLTGIKVWRVLLFVYAVSGLLAGLGGVMSAARLyAANGLQLGQGYELDAIAAVILGGTSFVGGIGSIW 283
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 16131439 346 GAVMGAFIMASLDNGMSMMDVPTFWQYIVKGAILLLAVWMDSATKRRS 393
Cdd:COG4158 284 GTLIGALIIAVLNNGLILLGVSDFWQFIIKGLVIIIAVALDRYRQRGS 331
|
|
| MglC |
COG4211 |
ABC-type glucose/galactose transport system, permease component [Carbohydrate transport and ... |
22-387 |
5.82e-53 |
|
ABC-type glucose/galactose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443358 Cd Length: 336 Bit Score: 178.94 E-value: 5.82e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 22 LKSLNLQVFVM---IAAIIAIMLFFTWTTDGAYLSARNVSNLLRQTAITGILAVGMVFVIISAEIDLSVGSMMGLLGGVA 98
Cdd:COG4211 4 IKKKKIKNFLLnnaIYIVLLLLIIAIIIINPNFLSLRNIRNILTQSSTRMIIALGVAGLIVTQGTDLSAGRMVGLAAVIS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 99 AIC--------DVW--LGW-PLPLTIIVTLVLGLLLGAWNGWWVAYRKVPSFIVTLAGMLafrgILIGITNGTTVSPTSA 167
Cdd:COG4211 84 ASLlqsgdyagKFFpnLPElPIIVPILIAIAIGALFGLINGFFVAKLKVPPFIATLGTML----IVYGINSIYTDRPGAQ 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 168 AMSQIGQSYLPASTGFI-IGALGLMAFVGWqwrgrmrrqalglqspastavvgrqaltAIIVLGAIWllndyrgvptpvl 246
Cdd:COG4211 160 PIGGLDESFTNFAQGSInIGGFGIPYLIIY----------------------------AIIVIVIMW------------- 198
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 247 lltllllggmFMATRTAFGRRIYAIGGNLEAARLSGINVERTKLAVFAINGLMVAIAGLILSSRLGAGSPSAGNIAELDA 326
Cdd:COG4211 199 ----------FIWNKTKFGKNMYAVGGNPEAAEVSGVNVFKTLIIVYALAGALYGFAGFLEAARTGSATNNYGNGYELDA 268
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16131439 327 IAACVIGGTSLAGGVGSVAGAVMGAFIMASLDNGMSMMDVPTFWQYIVKGAILLLAVWMDS 387
Cdd:COG4211 269 IAACVVGGVSFSGGIGKISGVVIGVLIFTVINYGLTFIGVNPYWQYIIKGLIIIAAVALDI 329
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
2-392 |
1.45e-48 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 167.55 E-value: 1.45e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 2 SKSNPSEVKLAVPTSGGFSGLKSLNLQVFVMIAAIIAIMLFFTWTTdgaYLSARNVSNLLRQTAITGILAVGMVFVIISA 81
Cdd:PRK11285 4 VSTSGSGAAAAAPPKSRFSLWRIWDQYGMLVVFAVLFIACSLFVPN---FASFINMKGLGLAISMIGMVACTMLFCLASG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 82 EIDLSVGSMMGLLGGVAAIC-----DVWLGwplpltIIVTLVLGLLLGAWNGWWVAYRKVPSFIVTLAGMLAFRGILIGI 156
Cdd:PRK11285 81 DFDLSVASVVAFAGVVTAVVinateSLWLG------VAAGLLLGAAVGLVNGFVIARLKINALITTLATMQIVRGLAYII 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 157 TNGTTVSPTSAAMSQIGQSYLpastgfiigalglmafvgwqwrgrmrrqaLGLQSPASTAVVGrqaltaIIVLGaiWLLN 236
Cdd:PRK11285 155 SDGKAVGISDERFFALGYANF-----------------------------FGVPAPIWLTVAC------FVVFG--FLLN 197
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 237 dyrgvptpvllltllllggmfmatRTAFGRRIYAIGGNLEAARLSGINVERTKLAVFAINGLMVAIAGLILSSRLGAGSP 316
Cdd:PRK11285 198 ------------------------KTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGLVSALAGVILASRMTSGQP 253
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16131439 317 SAGNIAELDAIAACVIGGTSLAGGVGSVAGAVMGAFIMASLDNGMSMMDVPTFWQYIVKGAILLLAVWMDSATKRR 392
Cdd:PRK11285 254 MTSIGFELIVISACVLGGVSLKGGIAKISGVVAGVLILGTVENAMNLLNISPFYQYVVRGLILLAAVLFDRYKQRA 329
|
|
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
30-387 |
1.24e-43 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 154.46 E-value: 1.24e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 30 FVMIAAIIAImlfftwttDGAYLSARNVSNLLRQTAITGILAVGMVFVIISAEIDLSVGSMMGLLGGVAA---------- 99
Cdd:PRK09478 23 LVLLAIIIIQ--------DPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAAtllqsmdnan 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 100 -ICDVWLGWPLPLTIIVTLVLGLLLGAWNGWWVAYRKVPSFIVTLAGMLafrgILIGITNGTTVSPTSAAMSQIGQSYLP 178
Cdd:PRK09478 95 kVFPELATMPIALVILIVCAIGAVIGLINGLIIAYLNVTPFIATLGTMI----IVYGINSLYYDFVGASPISGFDSGFST 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 179 ASTGFI-IGALGLMAFVgwqwrgrmrrqalglqspastavvgrqaLTAIIVLGAIWllndyrgvptpvllltllllggmF 257
Cdd:PRK09478 171 FAQGFVaLGSFRLSYIT----------------------------FYALIAVAFVW-----------------------V 199
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 258 MATRTAFGRRIYAIGGNLEAARLSGINVERTKLAVFAINGLMVAIAGLILSSRLGAGSPSAGNIAELDAIAACVIGGTSL 337
Cdd:PRK09478 200 LWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGVFYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGGVSF 279
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 16131439 338 AGGVGSVAGAVMGAFIMASLDNGMSMMDVPTFWQYIVKGAILLLAVWMDS 387
Cdd:PRK09478 280 SGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAIIIFAVALDS 329
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
36-386 |
2.12e-39 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 142.60 E-value: 2.12e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 36 IIAIMLFFTWTTDGAYLSARNVSNLLRQTAITGILAVGMVFVIISAEIDLSVGSMMGLLGGVAAICDVWLGWPLPLTIIV 115
Cdd:PRK09699 18 LAIIVAIFGSLSPEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLMLAGVDPFLAALIG 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 116 TLVLGLLLGAWNGWWVAYRKVPSFIVTLAGMLAFRGILIGITNGTTVSPTSAamsqigqSYLPASTGFIIGalglmafvg 195
Cdd:PRK09699 98 GVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSF-------DFVNFFAASVIG--------- 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 196 wqwrgrmrrqalglqspastavVGRQALTAIIVLGAIWllndyrgvptpvllltllllggmFMATRTAFGRRIYAIGGNL 275
Cdd:PRK09699 162 ----------------------IPVPVIFSLIVALILW-----------------------FLTTRMRLGRNIYALGGNK 196
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 276 EAARLSGINVERTKLAVFAINGLMVAIAGLILSSRLGAGSPSAGNIAELDAIAACVIGGTSLAGGVGSVAGAVMGAFIMA 355
Cdd:PRK09699 197 NSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIG 276
|
330 340 350
....*....|....*....|....*....|.
gi 16131439 356 SLDNGMSMMDVPTFWQYIVKGAILLLAVWMD 386
Cdd:PRK09699 277 TINNGLNILQVQTYYQLVVMGGLIIAAVALD 307
|
|
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
26-393 |
9.20e-39 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 141.24 E-value: 9.20e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 26 NLQVFVMIAAIIAIMLFFTWTTDGaYLSARNVSNLLRQTAITGILAVGMVFVIISAEIDLSVGSMMGLLGGVAAICDVWL 105
Cdd:PRK11618 5 NLPLMITIGVFVLGYLFCLVQFPG-FASTRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKLIGDY 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 106 GWPLPLTIIVTLVLGLLLGAWNGWWVAYRKVPSFIVTLAGMLAFRGI--LIGITNGTTVSPTSAAMSQIgqsYLPASTGf 183
Cdd:PRK11618 84 GWSPLLAFPLVLVMGAAFGAFMGALIHYLKLPAFIVTLAGMFLARGVsfLVSEESIPINHPFYDTLSSL---AWKLPGG- 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 184 iiGALGLMAfvgwqwrgrmrrqalglqspastavvgrqaLTAIIVLGAiwllndyrgvptpvllltllllgGMFMATRTA 263
Cdd:PRK11618 160 --GRLSAMA------------------------------LIMLAVVAI-----------------------GIFLAHRTR 184
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 264 FGRRIYAIGGNLEAARLSGINVERTKLAVFAINGLMVAIAGLILSSRLGAGSPSAGNIAELDAIAACVIGGTSLAGGVGS 343
Cdd:PRK11618 185 FGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSLYTSAGYALAAVGVELDAIAAVVIGGTLLTGGVGT 264
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 16131439 344 VAGAVMGAFIMA------SLDNGMSmmdvpTFWQYIVKGAILLLAVWMDSATKRRS 393
Cdd:PRK11618 265 VLGTLFGVLIQGliqtyiTFDGTLS-----SWWTKIVIGILLFVFIALQRGLTVLA 315
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
33-380 |
2.81e-36 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 135.24 E-value: 2.81e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 33 IAAIIAIMLFFTW--TTDGAYLSARNVSNLLRQTAITGILAVGMVFVIISAEIDLSVGSMMGLlggVAAICDVWL--GWP 108
Cdd:PRK15432 11 LTALLAIVLLFVLlgFLDRQYLSLQTLTMVFSSAQILILLAIGATLVMLTRNIDVSVGSITGL---CAVLVGMLLnaGYS 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 109 LPLTIIVTLVLGLLLGAWNGWWVAYRKVPSFIVTLAGMLAFRGILIGITNGTTVSPTSAAMSQigqsyLPASTGFIIGAL 188
Cdd:PRK15432 88 LPVACLATLLLGLLAGFFNGVLVAWLRIPAIVATLGTLGLYRGIMLLWTGGKWIEGLPAELKQ-----LSAPILLGISPI 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 189 GLmafvgwqwrgrmrrqalglqspastavvgrqaLTAIIVLGAIWLLndyrgvptpvllltllllggmfmaTRTAFGRRI 268
Cdd:PRK15432 163 GW--------------------------------LTLILILAMAWLL------------------------AKTAFGRSF 186
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 269 YAIGGNLEAARLSGINVERTKLAVFAINGLMVAIAGLILSSRLGAGSPSAGNIAELDAIAACVIGGTSLAGGVGSVAGAV 348
Cdd:PRK15432 187 YATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQTGTGLEMKAIAACVLGGISLLGGSGTIIGAV 266
|
330 340 350
....*....|....*....|....*....|..
gi 16131439 349 MGAFIMASLDNGMSMMDVPTFWQYIVKGAILL 380
Cdd:PRK15432 267 LGAYFLTQIDSVLVLLRIPAWWNDFIAGLVLL 298
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
56-383 |
9.27e-21 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 90.78 E-value: 9.27e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 56 NVSNLLRQTAITGILAVGMVFVI-ISAEIDLSVGSMMGLLGGVAAICDVWLGWPLPLTIIVTLVLGLLLGAWNGWWVAYR 134
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 135 KVPSFIVTLAGMLAFRGILIGITNGttvsptsaamsQIGQSYLPASTGFIIGALGLMAFVGWQWrgrmrrqalglqspas 214
Cdd:pfam02653 81 KINEVIITLLLNLAALGLALFLVTG-----------ILGGEGGTSGITGPSGFPGAFLSFAFAF---------------- 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 215 tavvgrQALTAIIVLGAIWLLndyrgvptpvllltllllggmfmATRTAFGRRIYAIGGNLEAARLSGINVERTKLAVFA 294
Cdd:pfam02653 134 ------IFLLALLLVLALWLL-----------------------LYRTKFGRALRAVGENEEAARAAGINVKKLKLLTFV 184
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 295 INGLMVAIAGLILSSRLGAGSPS-AGNIAELDAIAACVIGGTslaggvGSVAGAVMGAFIMASLDNGMSMM-DVPTFWQY 372
Cdd:pfam02653 185 ISGALAGLAGALLALYTGVVPPSnFGVGLGLDAIAAVVLGGA------GSPIGVVIGSLIIGLVQSLGLGAlGSPPELSL 258
|
330
....*....|.
gi 16131439 373 IVKGAILLLAV 383
Cdd:pfam02653 259 LVLGALLILVL 269
|
|
| PRK15038 |
PRK15038 |
autoinducer 2 ABC transporter permease LsrD; |
261-383 |
5.77e-12 |
|
autoinducer 2 ABC transporter permease LsrD;
Pssm-ID: 184998 Cd Length: 330 Bit Score: 66.01 E-value: 5.77e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 261 RTAFGRRIYAIGGNLEAARLSGINVERTKLAVFAINGLMVAIAGLILSSRLGAGSPSAGNIAELDAIAACVIGGTSLAGG 340
Cdd:PRK15038 183 RTHAGRNVFLIGQSPRVALYSAIPVNRTLCALYAMTGLASAIAAVLLVSYFGSARSDLGASFLMPAITAVVLGGANIYGG 262
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 16131439 341 VGSVAGAVMGAFIMASLDNGMSMMDVPTFWQYIVKGAILLLAV 383
Cdd:PRK15038 263 SGSIIGTALAVLLVGYLQQGLQMAGVPNQISSALSGALLIVVV 305
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
66-383 |
1.14e-11 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 64.61 E-value: 1.14e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 66 ITGILAVGMVFVI-ISAEIDLSVGSMMGLLGGVAAICdVWLGWPLPLTIIVTLVLGLLLGAWNGWWVAYRKVPSFIVTLA 144
Cdd:cd06574 3 IYAILALGVYIVFrILGFPDLTVDGSFPLGAAVAAIL-IVAGYNPWLALIAAILAGAAAGLVTGFLHTRLKINGLLAGIL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 145 GMLAFRGILIGITNGTTVsptsaamSQIGQSYLPASTGFIIGALGLMAFVGWqwrgrmrrqalglqspastavvgrqALT 224
Cdd:cd06574 82 IMIGLYSINLRIMGGPNI-------PLGTRDTLLGLLLLFGISGTLSIPVVL-------------------------LLI 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 225 AIIVLGAIWLLndyrgvptpvllltllllggmfmaTRTAFGRRIYAIGGNLEAARLSGINVERTKLAVFAINGLMVAIAG 304
Cdd:cd06574 130 VLLVLFLVIWF------------------------LRTKLGLAMRATGDNPDMARSLGINVDRTRILGLVISNALAALGG 185
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 305 LILSSRLGAGSPSAGNIAELDAIAACVIGGTSLAG--GVGSVAGAVMGAFIMASLDNGMSMMDVPTFWQYIVKGAILLLA 382
Cdd:cd06574 186 ALYAQYQGFADVNMGIGTGVIGLAAVIIGGAIVGRrtIKASILGVIIGAILYRIALALALGSGLIPSDLKLITAGVIVLV 265
|
.
gi 16131439 383 V 383
Cdd:cd06574 266 L 266
|
|
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
260-383 |
4.68e-11 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 62.79 E-value: 4.68e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 260 TRTAFGRRIYAIGGNLEAARLSGINVERTKLAVFAINGLMVAIAGLILSSRLGAGSPSAGNIAE-LDAIAACVIggtsla 338
Cdd:COG4177 153 VRSRFGRALRAIRENEIAAEALGINVTRYKLLAFVLSAALAGLAGALYAHYVGFVSPESFSFLLsIEILLMVVL------ 226
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 16131439 339 GGVGSVAGAVMGAFIMASLDNGMSMMdvpTFWQYIVKGAILLLAV 383
Cdd:COG4177 227 GGLGSLLGPVLGAVLLVLLPELLRSL---PEYRLLIFGLLLILVV 268
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
260-381 |
6.23e-11 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 62.77 E-value: 6.23e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 260 TRTAFGRRIYAIGGNLEAARLSGINVERTKLAVFAINGLMVAIAGLILSSRLGAgSPSAGNIAELDAIAACVIggtslaG 339
Cdd:COG0559 159 RRTRLGLAMRAVAQNREAARLMGINVDRVIALTFALGAALAGLAGVLLAPIYSV-SPTMGFLLGLKAFAAVVL------G 231
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 16131439 340 GVGSVAGAVMGAFIMASLDNGMSMMdVPTFWQYIVKGAILLL 381
Cdd:COG0559 232 GLGSIPGAVVGGLLLGLAESLGAAY-LPSGYKDVVAFVLLIL 272
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
260-383 |
1.63e-10 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 61.31 E-value: 1.63e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 260 TRTAFGRRIYAIGGNLEAARLSGINVERTKLAVFAINGLMVAIAGLILSSRLGAGSPSAGNIAE-LDAIAACVIggtsla 338
Cdd:cd06581 143 VRSPFGRALRAIRENEVAAEALGINVTRYKLLAFALSAALAGLAGALYAHYLGFVSPESFGFALsIELLLMVVL------ 216
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 16131439 339 GGVGSVAGAVMGAFIMASLDNGMSmmDVPTFWQYIVKGAILLLAV 383
Cdd:cd06581 217 GGLGSLLGPVLGAALLVLLPELLR--SLGPGLRLLVFGLLLILVV 259
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
260-355 |
4.12e-10 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 60.14 E-value: 4.12e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 260 TRTAFGRRIYAIGGNLEAARLSGINVERTKLAVFAINGLMVAIAGLILSSRLGAgSPSAGNIAELDAIAACVIggtslaG 339
Cdd:cd06582 149 RRTRLGRAIRAVAQNPEAARLLGINVRRVFALTFALGAALAGLAGVLLAPITGV-SPTMGLLLLLKAFAAVVL------G 221
|
90
....*....|....*.
gi 16131439 340 GVGSVAGAVMGAFIMA 355
Cdd:cd06582 222 GLGSIPGAVVGGLLLG 237
|
|
| NupP |
COG4603 |
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and ... |
257-392 |
5.70e-06 |
|
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and metabolism];
Pssm-ID: 443653 [Multi-domain] Cd Length: 356 Bit Score: 47.81 E-value: 5.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 257 FMATRTAFGRRIYAIGGNLEAARLSGINVERTKLAVFAINGLMVAIAGLI----LSSRLGAG-SPSAGniaeLDAIAACV 331
Cdd:COG4603 212 VLLNRTTLGYELRAVGLNPRAARYAGINVKRLIVLAMLISGALAGLAGAVevlgVQGRLTPGfSPGYG----FTGIAVAL 287
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16131439 332 IGGtslaggvGSVAGAVMGAFIMASLDNG----MSMMDVPTFWQYIVKGAILLLAVWMDSATKRR 392
Cdd:COG4603 288 LGR-------NNPLGIILAALLFGALYVGgdamQRALGVPSEIVDVIQGLIILFVLAADFLIRYR 345
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
257-382 |
1.77e-05 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 45.51 E-value: 1.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 257 FMATRTAFGRRIYAIGGNLEAARLSGINVERTKLAVFAINGLMVAIAGLILS-SRLGAGSPSAGNIAELDAIAACVIGGt 335
Cdd:cd06580 110 LLLYRTRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAGAYLVlGVQGRFTEGMSAGYGFIAIAVALLGR- 188
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 16131439 336 slaggvGSVAGAVMGAFIMASLDNGM----SMMDVPTFWQYIVKGAILLLA 382
Cdd:cd06580 189 ------WNPLGILLAALLFGALEAGGialqRSGGVPSELVQVLPGIIVLFV 233
|
|
| PRK10740 |
PRK10740 |
high-affinity branched-chain amino acid ABC transporter permease LivH; |
265-383 |
3.17e-05 |
|
high-affinity branched-chain amino acid ABC transporter permease LivH;
Pssm-ID: 182689 [Multi-domain] Cd Length: 308 Bit Score: 45.30 E-value: 3.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131439 265 GRRIYAIGGNLEAARLSGINVERTKLAVFAINGLMVAIAGLILSSRLGAGSPSAGNIAELDAIAACVIggtslaGGVGSV 344
Cdd:PRK10740 181 GRACRACAEDLKMASLLGINTDRVIALTFVIGAAMAAVAGVLLGQFYGVINPYIGFMAGMKAFTAAVL------GGIGSI 254
|
90 100 110
....*....|....*....|....*....|....*....
gi 16131439 345 AGAVMGAFIMAsLDNGMSMMDVPTFWQYIVKGAILLLAV 383
Cdd:PRK10740 255 PGAMIGGLILG-IAEALSSAYLSTEYKDVVSFALLILVL 292
|
|
| |
