|
Name |
Accession |
Description |
Interval |
E-value |
| PRK03818 |
PRK03818 |
putative transporter; Validated |
1-552 |
0e+00 |
|
putative transporter; Validated
Pssm-ID: 179654 [Multi-domain] Cd Length: 552 Bit Score: 943.91 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111636 1 MSDIALTVSILALVAVVGLFIGNVKFRGIGLGIGGVLFGGIIVGHFVSQAGMTLSSDMLHVIQEFGLILFVYTIGIQVGP 80
Cdd:PRK03818 1 MSDIALTVSILALVAVVGLWIGNIKIRGVGLGIGGVLFGGIIVGHFVSQFGLTLDSDMLHFIQEFGLILFVYTIGIQVGP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111636 81 GFFASLRVSGLRLNLFAVLIVIIGGLVTAILHKLFDIPLPVVLGIFSGAVTNTPALGAGQQILRDLGTPMEMVDQMGMSY 160
Cdd:PRK03818 81 GFFSSLRKSGLRLNLFAVLIVILGGLVTAILHKLFGIPLPVMLGIFSGAVTNTPALGAGQQILRDLGTPGDLVDQMGMGY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111636 161 AMAYPFGICGILFTMWMLRVIFRVNVETEAQQHESSRTNGGALIKTINIRVENPNLHDLAIKDVPILNGDKIICSRLKRE 240
Cdd:PRK03818 161 AMAYPFGICGILLSMWLIRLIFRINVDKEAQEFESSSGNGHELLQTINIRVENPNLHGKAIKDVPILNGDKFVCSRLKRG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111636 241 ETLKVPSPDTIIQLGDLLHLVGQPADLHNAQLVIGQEVDTSLSTKGTDLRVERVVVTNENVLGKRIRDLHFKERYDVVIS 320
Cdd:PRK03818 241 DTLMVPSPDTIIQLGDLLHLVGQPEDLHKAQLVIGEEVDTSLSTRGTDLRSERVVVTNEKVLGKKLRDLHLKNKYGVVIS 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111636 321 RLNRAGVELVASGDISLQFGDILNLVGRPSAIDAVANVLGNAQQKLQQVQMLPVFIGIGLGVLLGSIPVFVPGFPAALKL 400
Cdd:PRK03818 321 RLNRAGVELVASPDLSLQFGDILNLVGRPEAIDAVANVLGNAQQKLQQVQMLPVFIGIGLGVLLGSIPFFIPGFPAALKL 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111636 401 GLAGGPLIMALILGRIGSIGKLYWFMPPSANLALRELGIVLFLSVVGLKSGGDFVNTLVNGEGLSWIGYGALITAVPLIT 480
Cdd:PRK03818 401 GLAGGPLIVALILGRIGSIGKLYWFMPPSANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAVPLLI 480
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 90111636 481 VGILARMLAKMNYLTMCGMLAGSMTDPPALAFANNLHPTSGAAALSYATVYPLVMFLRIITPQLLAVLFWSI 552
Cdd:PRK03818 481 VGILARMLAKMNYLTLCGMLAGSMTDPPALAFANNLHPTSGAAALSYATVYPLVMFLRIITPQLLAVLFWSL 552
|
|
| YbjL |
COG2985 |
Uncharacterized membrane protein YbjL, putative transporter [General function prediction only]; ... |
1-549 |
0e+00 |
|
Uncharacterized membrane protein YbjL, putative transporter [General function prediction only];
Pssm-ID: 442224 [Multi-domain] Cd Length: 543 Bit Score: 642.56 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111636 1 MSDIALTVSILALVAVVGLFIGNVKFRGIGLGIGGVLFGGIIVGHFvsqaGMTLssDMLHVIQEFGLILFVYTIGIQVGP 80
Cdd:COG2985 5 ELLVANPELALFLVIALGYLLGKIKIGGFSLGVAGVLFVGLLIGHF----GVTL--HIPHFVKSLGLALFVYAIGLQVGP 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111636 81 GFFASLRVSGLRLNLFAVLIVIIGGLVTAILHKLFDIPLPVVLGIFSGAVTNTPALGAGQQILRDLGTPMEMVDQMGMSY 160
Cdd:COG2985 79 GFFASLKRDGLKLNLLAVVVVVLGLLVALALAKLFGLDPGLAAGLFAGALTNTPALGAAQDALGKLGLSKQLSANPAVGY 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111636 161 AMAYPFGICGILFTMWMLRVIFRVNVETEAQQHESSRTNGGALIKTINIRVENPNLHDLAIKDVPILNGDKIICSRLKRE 240
Cdd:COG2985 159 AVAYPFGVIGIILFVALLPKLFRIDLDAEAKKLEAGEGSAYPPLVTRAYRVTNPNLVGKTVAELEALLGTRVVISRIRRG 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111636 241 ETLKVPSPDTIIQLGDLLHLVGQPADLHNAQLVIGQEVDTSlSTKGTDLRVERVVVTNENVLGKRIRDLHFKERYDVVIS 320
Cdd:COG2985 239 GEIIVPTPDTVLQEGDIVLVVGTREALEAAEALLGEEVDDS-ELLDSDLDVRRIVVTNKEVAGKTLGELNLRNRFGVVIT 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111636 321 RLNRAGVELVASGDISLQFGDILNLVGRPSAIDAVANVLGNAQQKLQQVQMLPVFIGIGLGVLLGSIPVFVPGFPaALKL 400
Cdd:COG2985 318 RVRRGGVELPATPDTVLQLGDRLTVVGPKEDVERVAKLLGNSERKLSETDLLPLGLGIVLGLLLGSIPIPLPGIP-PLSL 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111636 401 GLAGGPLIMALILGRIGSIGKLYWFMPPSANLALRELGIVLFLSVVGLKSGGDFVNTLVNgEGLSWIGYGALITAVPLIT 480
Cdd:COG2985 397 GLAGGPLIVGLLLGRLGRTGPLVGYMPPSANLLLRELGLALFLAVVGLSAGPGFVETLQE-SGLLLFLLGALVTLVPLLV 475
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 90111636 481 VGILARMLAKMNYLTMCGMLAGSMTDPPALAFANNLHPtSGAAALSYATVYPLVMFLRIITPQLLAVLF 549
Cdd:COG2985 476 VLLVGRYVLKLNYLILLGALAGAMTSPPALAAANEAAG-SDAPALGYATVYPLAMILLILLGQLLVLLL 543
|
|
| YidE_YbjL_dupl |
TIGR01625 |
AspT/YidE/YbjL antiporter duplication domain; This model represents a domain that is ... |
378-533 |
3.82e-53 |
|
AspT/YidE/YbjL antiporter duplication domain; This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 130686 [Multi-domain] Cd Length: 154 Bit Score: 177.52 E-value: 3.82e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111636 378 IGLGVLLGSIPVFVPGFPaaLKLGLAGGPLIMALILGRIGSIGKLYWFMPPSANLALRELGIVLFLSVVGLKSGGDFVNT 457
Cdd:TIGR01625 1 LALGLLLGKIPIGLPGFS--IKLGNAGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSS 78
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 90111636 458 LVNGEGLSWIGYGALITAVPLITVGILARMLAKMNYLTMCGMLAGSMTDPPALAFANNLHPTSGAAALSYATVYPL 533
Cdd:TIGR01625 79 LKDGGGLLRINGGALITVVPTLLVAVALIKLLRINYALTAGMLAGATTNTPALDAANDTLRTSDLPALGYATVYPL 154
|
|
| Asp-Al_Ex |
pfam06826 |
Predicted Permease Membrane Region; This family represents five transmembrane helices that are ... |
373-546 |
1.86e-46 |
|
Predicted Permease Membrane Region; This family represents five transmembrane helices that are normally found flanking (five either side) a pair of pfam02080 domains. This suggests that the paired regions form a ten helical structure, probably forming the pore, whereas the pfam02080) binds a ligand for export or regulation of the pore. Swiss:Q8L3K8 is described as a aspartate-alanine antiporter. In conjunction with Swiss:Q8L3K9 it forms a 'proton motive metabolic cycle catalyzed by an aspartate-alanine exchange'. The general conservation of domain architecture in this family suggests that they are functional orthologues.
Pssm-ID: 284291 [Multi-domain] Cd Length: 167 Bit Score: 160.43 E-value: 1.86e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111636 373 PVFIGIGLGVLLGSIPvfvpgFPAALKLGLAGGPLIMALILGRIGSIGKLywFMPPSANLALRELGIVLFLSVVGLKSGG 452
Cdd:pfam06826 1 ALFLGIALGLLLGRIK-----ISGGFSLGVAGGVLIVGLLLGHFGSTGPT--FMPISALSFLRELGLALFLAAVGLSAGP 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111636 453 DFVNTLVNGeGLSWIGYGALITAVPLITVGILARMLAKMNYLTMCGMLAGSMTDPPALAFANNLHPTSGAAALSYATVYP 532
Cdd:pfam06826 74 GFFSSLKKD-GLLLIGLALLVTVVPLLLALVLGKYVLKLDPGLLAGLLAGALTSTPALGAANDALAGSDIPALGYAVTYP 152
|
170
....*....|....
gi 90111636 533 LVMFLRIITPQLLA 546
Cdd:pfam06826 153 FGVVGLILAGQVLA 166
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK03818 |
PRK03818 |
putative transporter; Validated |
1-552 |
0e+00 |
|
putative transporter; Validated
Pssm-ID: 179654 [Multi-domain] Cd Length: 552 Bit Score: 943.91 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111636 1 MSDIALTVSILALVAVVGLFIGNVKFRGIGLGIGGVLFGGIIVGHFVSQAGMTLSSDMLHVIQEFGLILFVYTIGIQVGP 80
Cdd:PRK03818 1 MSDIALTVSILALVAVVGLWIGNIKIRGVGLGIGGVLFGGIIVGHFVSQFGLTLDSDMLHFIQEFGLILFVYTIGIQVGP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111636 81 GFFASLRVSGLRLNLFAVLIVIIGGLVTAILHKLFDIPLPVVLGIFSGAVTNTPALGAGQQILRDLGTPMEMVDQMGMSY 160
Cdd:PRK03818 81 GFFSSLRKSGLRLNLFAVLIVILGGLVTAILHKLFGIPLPVMLGIFSGAVTNTPALGAGQQILRDLGTPGDLVDQMGMGY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111636 161 AMAYPFGICGILFTMWMLRVIFRVNVETEAQQHESSRTNGGALIKTINIRVENPNLHDLAIKDVPILNGDKIICSRLKRE 240
Cdd:PRK03818 161 AMAYPFGICGILLSMWLIRLIFRINVDKEAQEFESSSGNGHELLQTINIRVENPNLHGKAIKDVPILNGDKFVCSRLKRG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111636 241 ETLKVPSPDTIIQLGDLLHLVGQPADLHNAQLVIGQEVDTSLSTKGTDLRVERVVVTNENVLGKRIRDLHFKERYDVVIS 320
Cdd:PRK03818 241 DTLMVPSPDTIIQLGDLLHLVGQPEDLHKAQLVIGEEVDTSLSTRGTDLRSERVVVTNEKVLGKKLRDLHLKNKYGVVIS 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111636 321 RLNRAGVELVASGDISLQFGDILNLVGRPSAIDAVANVLGNAQQKLQQVQMLPVFIGIGLGVLLGSIPVFVPGFPAALKL 400
Cdd:PRK03818 321 RLNRAGVELVASPDLSLQFGDILNLVGRPEAIDAVANVLGNAQQKLQQVQMLPVFIGIGLGVLLGSIPFFIPGFPAALKL 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111636 401 GLAGGPLIMALILGRIGSIGKLYWFMPPSANLALRELGIVLFLSVVGLKSGGDFVNTLVNGEGLSWIGYGALITAVPLIT 480
Cdd:PRK03818 401 GLAGGPLIVALILGRIGSIGKLYWFMPPSANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAVPLLI 480
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 90111636 481 VGILARMLAKMNYLTMCGMLAGSMTDPPALAFANNLHPTSGAAALSYATVYPLVMFLRIITPQLLAVLFWSI 552
Cdd:PRK03818 481 VGILARMLAKMNYLTLCGMLAGSMTDPPALAFANNLHPTSGAAALSYATVYPLVMFLRIITPQLLAVLFWSL 552
|
|
| YbjL |
COG2985 |
Uncharacterized membrane protein YbjL, putative transporter [General function prediction only]; ... |
1-549 |
0e+00 |
|
Uncharacterized membrane protein YbjL, putative transporter [General function prediction only];
Pssm-ID: 442224 [Multi-domain] Cd Length: 543 Bit Score: 642.56 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111636 1 MSDIALTVSILALVAVVGLFIGNVKFRGIGLGIGGVLFGGIIVGHFvsqaGMTLssDMLHVIQEFGLILFVYTIGIQVGP 80
Cdd:COG2985 5 ELLVANPELALFLVIALGYLLGKIKIGGFSLGVAGVLFVGLLIGHF----GVTL--HIPHFVKSLGLALFVYAIGLQVGP 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111636 81 GFFASLRVSGLRLNLFAVLIVIIGGLVTAILHKLFDIPLPVVLGIFSGAVTNTPALGAGQQILRDLGTPMEMVDQMGMSY 160
Cdd:COG2985 79 GFFASLKRDGLKLNLLAVVVVVLGLLVALALAKLFGLDPGLAAGLFAGALTNTPALGAAQDALGKLGLSKQLSANPAVGY 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111636 161 AMAYPFGICGILFTMWMLRVIFRVNVETEAQQHESSRTNGGALIKTINIRVENPNLHDLAIKDVPILNGDKIICSRLKRE 240
Cdd:COG2985 159 AVAYPFGVIGIILFVALLPKLFRIDLDAEAKKLEAGEGSAYPPLVTRAYRVTNPNLVGKTVAELEALLGTRVVISRIRRG 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111636 241 ETLKVPSPDTIIQLGDLLHLVGQPADLHNAQLVIGQEVDTSlSTKGTDLRVERVVVTNENVLGKRIRDLHFKERYDVVIS 320
Cdd:COG2985 239 GEIIVPTPDTVLQEGDIVLVVGTREALEAAEALLGEEVDDS-ELLDSDLDVRRIVVTNKEVAGKTLGELNLRNRFGVVIT 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111636 321 RLNRAGVELVASGDISLQFGDILNLVGRPSAIDAVANVLGNAQQKLQQVQMLPVFIGIGLGVLLGSIPVFVPGFPaALKL 400
Cdd:COG2985 318 RVRRGGVELPATPDTVLQLGDRLTVVGPKEDVERVAKLLGNSERKLSETDLLPLGLGIVLGLLLGSIPIPLPGIP-PLSL 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111636 401 GLAGGPLIMALILGRIGSIGKLYWFMPPSANLALRELGIVLFLSVVGLKSGGDFVNTLVNgEGLSWIGYGALITAVPLIT 480
Cdd:COG2985 397 GLAGGPLIVGLLLGRLGRTGPLVGYMPPSANLLLRELGLALFLAVVGLSAGPGFVETLQE-SGLLLFLLGALVTLVPLLV 475
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 90111636 481 VGILARMLAKMNYLTMCGMLAGSMTDPPALAFANNLHPtSGAAALSYATVYPLVMFLRIITPQLLAVLF 549
Cdd:COG2985 476 VLLVGRYVLKLNYLILLGALAGAMTSPPALAAANEAAG-SDAPALGYATVYPLAMILLILLGQLLVLLL 543
|
|
| YidE_YbjL_dupl |
TIGR01625 |
AspT/YidE/YbjL antiporter duplication domain; This model represents a domain that is ... |
378-533 |
3.82e-53 |
|
AspT/YidE/YbjL antiporter duplication domain; This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 130686 [Multi-domain] Cd Length: 154 Bit Score: 177.52 E-value: 3.82e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111636 378 IGLGVLLGSIPVFVPGFPaaLKLGLAGGPLIMALILGRIGSIGKLYWFMPPSANLALRELGIVLFLSVVGLKSGGDFVNT 457
Cdd:TIGR01625 1 LALGLLLGKIPIGLPGFS--IKLGNAGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSS 78
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 90111636 458 LVNGEGLSWIGYGALITAVPLITVGILARMLAKMNYLTMCGMLAGSMTDPPALAFANNLHPTSGAAALSYATVYPL 533
Cdd:TIGR01625 79 LKDGGGLLRINGGALITVVPTLLVAVALIKLLRINYALTAGMLAGATTNTPALDAANDTLRTSDLPALGYATVYPL 154
|
|
| Asp-Al_Ex |
pfam06826 |
Predicted Permease Membrane Region; This family represents five transmembrane helices that are ... |
373-546 |
1.86e-46 |
|
Predicted Permease Membrane Region; This family represents five transmembrane helices that are normally found flanking (five either side) a pair of pfam02080 domains. This suggests that the paired regions form a ten helical structure, probably forming the pore, whereas the pfam02080) binds a ligand for export or regulation of the pore. Swiss:Q8L3K8 is described as a aspartate-alanine antiporter. In conjunction with Swiss:Q8L3K9 it forms a 'proton motive metabolic cycle catalyzed by an aspartate-alanine exchange'. The general conservation of domain architecture in this family suggests that they are functional orthologues.
Pssm-ID: 284291 [Multi-domain] Cd Length: 167 Bit Score: 160.43 E-value: 1.86e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111636 373 PVFIGIGLGVLLGSIPvfvpgFPAALKLGLAGGPLIMALILGRIGSIGKLywFMPPSANLALRELGIVLFLSVVGLKSGG 452
Cdd:pfam06826 1 ALFLGIALGLLLGRIK-----ISGGFSLGVAGGVLIVGLLLGHFGSTGPT--FMPISALSFLRELGLALFLAAVGLSAGP 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111636 453 DFVNTLVNGeGLSWIGYGALITAVPLITVGILARMLAKMNYLTMCGMLAGSMTDPPALAFANNLHPTSGAAALSYATVYP 532
Cdd:pfam06826 74 GFFSSLKKD-GLLLIGLALLVTVVPLLLALVLGKYVLKLDPGLLAGLLAGALTSTPALGAANDALAGSDIPALGYAVTYP 152
|
170
....*....|....
gi 90111636 533 LVMFLRIITPQLLA 546
Cdd:pfam06826 153 FGVVGLILAGQVLA 166
|
|
| PRK04972 |
PRK04972 |
putative transporter; Provisional |
10-550 |
6.79e-39 |
|
putative transporter; Provisional
Pssm-ID: 179905 [Multi-domain] Cd Length: 558 Bit Score: 149.87 E-value: 6.79e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111636 10 ILALVAVVGLFIGNVKFrgiGLGIGGVLFGGIIVGHFVSQAGMTLSSDMLHViqefGLILFVYTIGIQVGPGFFASLRVS 89
Cdd:PRK04972 16 LLFVVLALGLCLGKLRL---GSIQLGNSIGVLVVSLLLGQQHFSINTDALNL----GFMLFIFCVGVEAGPNFFSIFFRD 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111636 90 GLRLNLFAVLIVIIGGLVTAILHKLFDIPLPVVLGIFSGAVTNTPAL-GAGQQILRDLGTPMEM---VDQMGMSYAMAYP 165
Cdd:PRK04972 89 GKNYLMLALVMVGSALVIALGLGKLFGWDIGLTAGMLAGSMTSTPVLvGAGDTLRHSGAESRQLslaLDNLSLGYALTYL 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111636 166 FGICGILFTMWMLRVIFRVNVETEAQQHESSRTNGGALIKTINI------RVeNPNLHDLA----IKDVPILNGDKIICS 235
Cdd:PRK04972 169 IGLVSLIVGARYLPKLQHQDLQTSAQQIARERGLDTDAQRKVYLpvirayRV-GPELVAWTdgknLRELGIYRQTGCYIE 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111636 236 RLKREETLKVPSPDTIIQLGDLLHLVGQPaDLH---NAQLVIGQEV-DTSLstkgTDLRV--ERVVVTNENVLGKRIRDL 309
Cdd:PRK04972 248 RIRRNGILANPDGDAVLQMGDEIALVGYP-DAHarlDPSFRNGKEVfDRDL----LDMRIvtEEIVVKNHNAVGKRLSQL 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111636 310 HFKErYDVVISRLNRAGVELVASGDISLQFGDILNLVGRPSAIDAVANVLGNAQQKLQQVQMLPVFIGIGLGVLLGSIPV 389
Cdd:PRK04972 323 KLTD-HGCFLNRVIRSQIEMPIDDNVVLNKGDVLQVSGDARRVKTIADRIGFISIHSQVTDLLAFCAFFIIGLMIGMITF 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111636 390 FVPGFpaALKLGLAGGPLIMALILGRIGSIGKLYWFMPPSANLALRELGIVLFLSVVGLKSGGDFVNTLvNGEGLSWIGY 469
Cdd:PRK04972 402 QFSNF--SFGIGNAAGLLFAGIMLGFLRANHPTFGYIPQGALNMVKEFGLMVFMAGVGLSAGSGINNGL-GAVGGQMLIA 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111636 470 GALITAVPLITVGILARMLAKMNYLTMCGMLAGSMTDPPALAFANNlHPTSGAAALSYATVYPLVMFLRIITPQLLaVLF 549
Cdd:PRK04972 479 GLIVSLVPVVICFLFGAYVLRMNRALLFGAIMGARTCAPAMEIISD-TARSNIPALGYAGTYAIANVLLTLAGTLI-VIV 556
|
.
gi 90111636 550 W 550
Cdd:PRK04972 557 W 557
|
|
| Asp-Al_Ex |
pfam06826 |
Predicted Permease Membrane Region; This family represents five transmembrane helices that are ... |
11-179 |
1.29e-32 |
|
Predicted Permease Membrane Region; This family represents five transmembrane helices that are normally found flanking (five either side) a pair of pfam02080 domains. This suggests that the paired regions form a ten helical structure, probably forming the pore, whereas the pfam02080) binds a ligand for export or regulation of the pore. Swiss:Q8L3K8 is described as a aspartate-alanine antiporter. In conjunction with Swiss:Q8L3K9 it forms a 'proton motive metabolic cycle catalyzed by an aspartate-alanine exchange'. The general conservation of domain architecture in this family suggests that they are functional orthologues.
Pssm-ID: 284291 [Multi-domain] Cd Length: 167 Bit Score: 122.68 E-value: 1.29e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111636 11 LALVAVVGLFIGNVKFRGIGL--GIGGVLFGGIIVGHFVSQAGMTLSSDMLHVIQEFGLILFVYTIGIQVGPGFFASLRV 88
Cdd:pfam06826 2 LFLGIALGLLLGRIKISGGFSlgVAGGVLIVGLLLGHFGSTGPTFMPISALSFLRELGLALFLAAVGLSAGPGFFSSLKK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111636 89 SGLRLNLFAVLIVIIGGLVTAILHK-LFDIPLPVVLGIFSGAVTNTPALGAGQQILRDLGTPmemvdqmGMSYAMAYPFG 167
Cdd:pfam06826 82 DGLLLIGLALLVTVVPLLLALVLGKyVLKLDPGLLAGLLAGALTSTPALGAANDALAGSDIP-------ALGYAVTYPFG 154
|
170
....*....|..
gi 90111636 168 ICGILFTMWMLR 179
Cdd:pfam06826 155 VVGLILAGQVLA 166
|
|
| YidE_YbjL_dupl |
TIGR01625 |
AspT/YidE/YbjL antiporter duplication domain; This model represents a domain that is ... |
15-166 |
1.92e-27 |
|
AspT/YidE/YbjL antiporter duplication domain; This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 130686 [Multi-domain] Cd Length: 154 Bit Score: 107.80 E-value: 1.92e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111636 15 AVVGLFIGNVKFRGIGL-----GIGGVLFGGIIVGHFVSQAGMT--LSSDMLHVIQEFGLILFVYTIGIQVGPGFFASLR 87
Cdd:TIGR01625 1 LALGLLLGKIPIGLPGFsiklgNAGGVLFVGLLLGHFGATGPLTwyIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111636 88 VSG--LRLNLFAVLIVIIGGLVTAILHKLFDIPLPVVLGIFSGAVTNTPALGAGQQILRDlgtpmemVDQMGMSYAMAYP 165
Cdd:TIGR01625 81 DGGglLRINGGALITVVPTLLVAVALIKLLRINYALTAGMLAGATTNTPALDAANDTLRT-------SDLPALGYATVYP 153
|
.
gi 90111636 166 F 166
Cdd:TIGR01625 154 L 154
|
|
| TrkA_C |
pfam02080 |
TrkA-C domain; This domain is often found next to the pfam02254 domain. The exact function of ... |
291-359 |
1.25e-09 |
|
TrkA-C domain; This domain is often found next to the pfam02254 domain. The exact function of this domain is unknown. It has been suggested that it may bind an unidentified ligand. The domain is predicted to adopt an all beta structure.
Pssm-ID: 460440 [Multi-domain] Cd Length: 70 Bit Score: 54.54 E-value: 1.25e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 90111636 291 VERVVVTNENVLGKRIRDLHFKERYDVVISRLNRAGVELVASGDISLQFGDILNLVGRPSAIDAVANVL 359
Cdd:pfam02080 2 VEVTVPENSPLVGKTLKELNLPERFGVRIVAIRRGGRLIIPSGDTVLEAGDRLLVIGTPDDLAALRELL 70
|
|
| TrkA_C |
pfam02080 |
TrkA-C domain; This domain is often found next to the pfam02254 domain. The exact function of ... |
211-268 |
1.46e-05 |
|
TrkA-C domain; This domain is often found next to the pfam02254 domain. The exact function of this domain is unknown. It has been suggested that it may bind an unidentified ligand. The domain is predicted to adopt an all beta structure.
Pssm-ID: 460440 [Multi-domain] Cd Length: 70 Bit Score: 42.98 E-value: 1.46e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 90111636 211 VENPNLHDLAIKDVPILNGDKIICSRLKREETLKVPSPDTIIQLGDLLHLVGQPADLH 268
Cdd:pfam02080 7 PENSPLVGKTLKELNLPERFGVRIVAIRRGGRLIIPSGDTVLEAGDRLLVIGTPDDLA 64
|
|
| TrkA |
COG0569 |
Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain [Inorganic ion ... |
270-343 |
1.13e-04 |
|
Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain [Inorganic ion transport and metabolism, Signal transduction mechanisms];
Pssm-ID: 440335 [Multi-domain] Cd Length: 296 Bit Score: 44.29 E-value: 1.13e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 90111636 270 AQLVIGQEVDTSLSTKGTDLRVERVVVT-NENVLGKRIRDLHFKERYDVVISRLNRAGVELVASGDISLQFGDIL 343
Cdd:COG0569 221 ARLLLRPGVLDVLELADGDAEIVEVTVPeGSPLVGKTLKELDLRERYGVTVVAIKRGGEVIIPSGDTVLEAGDEL 295
|
|
| COG3273 |
COG3273 |
Uncharacterized protein, contains PhoU and TrkA_C domains [General function prediction only]; |
235-354 |
2.41e-04 |
|
Uncharacterized protein, contains PhoU and TrkA_C domains [General function prediction only];
Pssm-ID: 442504 [Multi-domain] Cd Length: 387 Bit Score: 43.50 E-value: 2.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111636 235 SRLKREETLKVPSPDTIIQLGDLLHLVGQPADLHNAQLVIGQEVDTSLST--------KGTDLRVERVVVTNENVL-GKR 305
Cdd:COG3273 251 SRLEAWVLRAARRVDDPVALRGLLHLASSTEVISDAALDIAEGVLRGLEDhpvvaeavRESDERIVRVTVPPGSPLvGKT 330
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 90111636 306 IRDLHFKERYDVVISRLNRAG-VELVASGDISLQFGDILNLVGRPSAIDA 354
Cdd:COG3273 331 LGELKLETETGVRVIAIRRGGgWIYDPDGDTRLRAGDVLIVKGTREGLER 380
|
|
| KhtT |
COG0490 |
K+/H+ antiporter KhtSTU, c-di-AMP-binding regulatory subunit KhtT, contains RCK_C (TrkA_C) ... |
219-359 |
1.93e-03 |
|
K+/H+ antiporter KhtSTU, c-di-AMP-binding regulatory subunit KhtT, contains RCK_C (TrkA_C) domain [Inorganic ion transport and metabolism, Signal transduction mechanisms];
Pssm-ID: 440256 [Multi-domain] Cd Length: 140 Bit Score: 38.75 E-value: 1.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111636 219 LAIKDVPILNGDKIICSRLKREETLKVPSPDTIIQLGDLLHLVGQPADLHNAQLVIGQEVDTSLSTkgtDLRVERVVVTN 298
Cdd:COG0490 1 AALALLLLLIILLLLLALAALLVAIVIVGVLGLILRGLLLLELALLLLLLGELLRLLTRLLIELVL---LLAIEEVKVPP 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 90111636 299 ENVL-GKRIRDLHFKERYDVVISRLNRAGVELVA-SGDISLQFGDILNLVGRPSAIDAVANVL 359
Cdd:COG0490 78 GSPLvGKTLGELNLRQRTGVTVVAIRRGGEVILSpGPDTVLEAGDTLVVVGTREQLERLEELL 140
|
|
| PRK04972 |
PRK04972 |
putative transporter; Provisional |
366-513 |
4.92e-03 |
|
putative transporter; Provisional
Pssm-ID: 179905 [Multi-domain] Cd Length: 558 Bit Score: 39.71 E-value: 4.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111636 366 LQQVQMLPVFIGIGLGVLLGSIPVfvpgfpAALKLGLAGGPLIMALILGRIGsigklYWFMPPSANLalrelGIVLFLSV 445
Cdd:PRK04972 9 LNGNYILLLFVVLALGLCLGKLRL------GSIQLGNSIGVLVVSLLLGQQH-----FSINTDALNL-----GFMLFIFC 72
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 90111636 446 VGLKSGGDFVNTLVNgEGLSWIgygaLITAVPLITVGILARMLAK---MNYLTMCGMLAGSMTDPPALAFA 513
Cdd:PRK04972 73 VGVEAGPNFFSIFFR-DGKNYL----MLALVMVGSALVIALGLGKlfgWDIGLTAGMLAGSMTSTPVLVGA 138
|
|
| Lys_export |
pfam03956 |
Lysine exporter LysO; Members of this family contain a conserved core of four predicted ... |
40-128 |
5.74e-03 |
|
Lysine exporter LysO; Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. This family includes lysine exporter LysO (YbjE) from E. coli.
Pssm-ID: 427613 Cd Length: 190 Bit Score: 38.17 E-value: 5.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111636 40 GIIVGHFVSQAGMTLSSDMLhviqEFGLILFVYTIGIQVG--PGFFASLRVSGLRLnLFAVLIVIIGGLV-TAILHKLFD 116
Cdd:pfam03956 7 GILLGYFLLPPADLLLDDLS----TYALYLLLFLVGIDLGsnRSLLQILRRLGPRI-LLLPLATILGSLLgGALASLLLG 81
|
90
....*....|..
gi 90111636 117 IPLPVVLGIFSG 128
Cdd:pfam03956 82 LSLKESLAVGSG 93
|
|
| |
