|
Name |
Accession |
Description |
Interval |
E-value |
| HerA_C |
pfam05872 |
Helicase HerA-like C-terminal; HerA is a DNA helicase able to utilize either 3' or 5' ... |
3-498 |
0e+00 |
|
Helicase HerA-like C-terminal; HerA is a DNA helicase able to utilize either 3' or 5' single-stranded DNA extensions for loading and subsequent DNA duplex unwinding. It forms a complex with NurA nuclease, this complex has the 5'-3' DNA end resection activity and is essential for cell viability in the crenarchaeon Sulfolobus islandicus. This entry represents the C-terminal domain of HerA which seems to be involved in the conversion of ATP hydrolysis into DNA translocation.
Pssm-ID: 428657 [Multi-domain] Cd Length: 503 Bit Score: 874.45 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132085 3 EPLLIARTPDTELFLLPGMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGVAQAGTVSEKLLARLKN 82
Cdd:pfam05872 1 EPLLGAGTPGQPLGLALKLANRHGLIAGATGTGKTVTLQTLAESFSDAGVPVFMADVKGDLSGIAAPGEPQDKLAARAAS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132085 83 IGVNDWQPHANPVVVWDIFGEKGHPVRATVSDLGPLLLARLLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQYIG 162
Cdd:pfam05872 81 MGLDDYQPAAFPVIFWDLFGEKGHPVRATISEMGPLLLARLLNLNDTQEGVLNIAFRVADDEGLLLLDLKDLRALLTYVA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132085 163 DNAKSFQNQYGNISSASVGAIQRGLLSLEQQGAAHFFGEPMLDIKDWMRTDANGKGVINILSAEKLYQMPKLYAASLLWM 242
Cdd:pfam05872 161 DNAKELGNQYGNVSPASVGAIQRALLTLEQQGAEHFFGEPALDIEDLMRTDADGRGVISLLAADKLINAPKLYSTFLLWL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132085 243 LSELYEQLPEAGDLEKPKLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLGQLGNRVQHA 322
Cdd:pfam05872 241 LSELFEQLPEVGDPDKPKLVFFFDEAHLLFNDAPKALLDKVEQVVRLIRSKGVGVYFVTQNPLDLPDTVLGQLGNRVQHA 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132085 323 LRAFTPKDQKAVKAAAQTMRANPAFDTEKAIQELGTGEALISFLDAKGSPSVVERAMVIAPCSRMGPVTEDERNGLINHS 402
Cdd:pfam05872 321 LRAFTPRDQKAVKAAADTFRPNPAFDTEEAITSLGTGEALVSTLDEKGAPSIVQRTLVRPPASRIGPLTDEERAALVAAS 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132085 403 PVYGKYEDEVDRESAYEMLQKGFQASTEQQNNPPAKGkEVAVDDGILGGLKDILFGT----TGPRGGKKDGVVQTMAKSA 478
Cdd:pfam05872 401 PVAGVYDQPIDRESAYEMLAGKAAAAAEAQAQAPAEQ-EKGGRSGLLGGLDDTALGPmpakVGPRGGKRETVVEALAKSA 479
|
490 500
....*....|....*....|....
gi 16132085 479 AR----QVTNQIVRGMLGSLLGGR 498
Cdd:pfam05872 480 VRsvasQVGREIVRGILGSLLRKR 503
|
|
| HerA |
COG0433 |
Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase ... |
2-388 |
1.24e-109 |
|
Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains [Replication, recombination and repair];
Pssm-ID: 440202 [Multi-domain] Cd Length: 388 Bit Score: 330.80 E-value: 1.24e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132085 2 SEPLLIAR--TPDTELFL-LPGMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGVAQAGtvseklla 78
Cdd:COG0433 23 GGGILIGKllSPGVPVYLdLDKLLNRHILILGATGSGKSNTLQVLLEELSRAGVPVLVFDPHGEYSGLAEPG-------- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132085 79 rLKNIGVNDWQPHAN---PVVVWDIFgekghpvrATVSDLGPLLLARLLNLnDVQSGVLNIIFRIADDQGLLLLDFKDLR 155
Cdd:COG0433 95 -AERADVGVFDPGAGrplPINPWDLF--------ATASELGPLLLSRLDLN-DTQRGVLREALRLADDKGLLLLDLKDLI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132085 156 AitqYIGDNAKsFQNQYGNISSASVGAIQRGLLSLEQqgAAHFFGEPMLDIKDWMRTDANgkgvINILSAEKLyqMPKLY 235
Cdd:COG0433 165 A---LLEEGEE-LGEEYGNVSAASAGALLRRLESLES--ADGLFGEPGLDLEDLLRTDGR----VTVIDLSGL--PEELQ 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132085 236 AASLLWMLSELYEQLPEAGDLE--KPKLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLG 313
Cdd:COG0433 233 STFVLWLLRELFEARPEVGDADdrKLPLVLVIDEAHLLAPAAPSALLEILERIAREGRKFGVGLILATQRPSDIDEDVLS 312
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16132085 314 QLGNrvQHALRAFTPKDQKAVKAAAQTMranpAFDTEKAIQELGTGEALISfLDAKGSPSVVERAMviaPCSRMG 388
Cdd:COG0433 313 QLGT--QIILRLFNPRDQKAVKAAAETL----SEDLLERLPSLGTGEALVL-GEGIPLPVLVKIRL---PESRPG 377
|
|
| TrwB_TraG_TraD_VirD4 |
cd01127 |
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are ... |
198-307 |
9.07e-07 |
|
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion (T4S) systems, versatile bacterial secretion systems mediating transport of protein and/or DNA. They are present in gram-negative and gram-positive bacteria, as well as archaea. They form hexameric rings and belong to the RecA-like NTPases superfamily, which also includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases.
Pssm-ID: 410871 [Multi-domain] Cd Length: 144 Bit Score: 48.37 E-value: 9.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132085 198 FFGEPMLDIkdWMR------TDANGKGVINILSAEKlyQMPKLYAASLLWMLSELYEQLPEAGDLEKPKLVFFFDEAHLL 271
Cdd:cd01127 15 SIVIPLLDQ--AARggsviiTDPKGELFLVIPDRDD--SFAALRALFFNQLFRALTELASLSPGRLPRRVWFILDEFANL 90
|
90 100 110
....*....|....*....|....*....|....*.
gi 16132085 272 fndapqVLLDKIEQVIRLIRSKGVGVWFVSQNPSDI 307
Cdd:cd01127 91 ------GRIPNLPNLLATGRKRGISVVLILQSLAQL 120
|
|
| cdc6 |
PRK00411 |
ORC1-type DNA replication protein; |
27-54 |
4.82e-03 |
|
ORC1-type DNA replication protein;
Pssm-ID: 234751 [Multi-domain] Cd Length: 394 Bit Score: 39.45 E-value: 4.82e-03
10 20
....*....|....*....|....*...
gi 16132085 27 LITGATGTGKTVTLQKLAESLSEIGVPV 54
Cdd:PRK00411 59 LIYGPPGTGKTTTVKKVFEELEEIAVKV 86
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
27-58 |
9.35e-03 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 36.97 E-value: 9.35e-03
10 20 30
....*....|....*....|....*....|..
gi 16132085 27 LITGATGTGKTVTLQKLAESLSEIGVPVFMAD 58
Cdd:smart00382 6 LIVGPPGSGKTTLARALARELGPPGGGVIYID 37
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| HerA_C |
pfam05872 |
Helicase HerA-like C-terminal; HerA is a DNA helicase able to utilize either 3' or 5' ... |
3-498 |
0e+00 |
|
Helicase HerA-like C-terminal; HerA is a DNA helicase able to utilize either 3' or 5' single-stranded DNA extensions for loading and subsequent DNA duplex unwinding. It forms a complex with NurA nuclease, this complex has the 5'-3' DNA end resection activity and is essential for cell viability in the crenarchaeon Sulfolobus islandicus. This entry represents the C-terminal domain of HerA which seems to be involved in the conversion of ATP hydrolysis into DNA translocation.
Pssm-ID: 428657 [Multi-domain] Cd Length: 503 Bit Score: 874.45 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132085 3 EPLLIARTPDTELFLLPGMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGVAQAGTVSEKLLARLKN 82
Cdd:pfam05872 1 EPLLGAGTPGQPLGLALKLANRHGLIAGATGTGKTVTLQTLAESFSDAGVPVFMADVKGDLSGIAAPGEPQDKLAARAAS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132085 83 IGVNDWQPHANPVVVWDIFGEKGHPVRATVSDLGPLLLARLLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQYIG 162
Cdd:pfam05872 81 MGLDDYQPAAFPVIFWDLFGEKGHPVRATISEMGPLLLARLLNLNDTQEGVLNIAFRVADDEGLLLLDLKDLRALLTYVA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132085 163 DNAKSFQNQYGNISSASVGAIQRGLLSLEQQGAAHFFGEPMLDIKDWMRTDANGKGVINILSAEKLYQMPKLYAASLLWM 242
Cdd:pfam05872 161 DNAKELGNQYGNVSPASVGAIQRALLTLEQQGAEHFFGEPALDIEDLMRTDADGRGVISLLAADKLINAPKLYSTFLLWL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132085 243 LSELYEQLPEAGDLEKPKLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLGQLGNRVQHA 322
Cdd:pfam05872 241 LSELFEQLPEVGDPDKPKLVFFFDEAHLLFNDAPKALLDKVEQVVRLIRSKGVGVYFVTQNPLDLPDTVLGQLGNRVQHA 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132085 323 LRAFTPKDQKAVKAAAQTMRANPAFDTEKAIQELGTGEALISFLDAKGSPSVVERAMVIAPCSRMGPVTEDERNGLINHS 402
Cdd:pfam05872 321 LRAFTPRDQKAVKAAADTFRPNPAFDTEEAITSLGTGEALVSTLDEKGAPSIVQRTLVRPPASRIGPLTDEERAALVAAS 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132085 403 PVYGKYEDEVDRESAYEMLQKGFQASTEQQNNPPAKGkEVAVDDGILGGLKDILFGT----TGPRGGKKDGVVQTMAKSA 478
Cdd:pfam05872 401 PVAGVYDQPIDRESAYEMLAGKAAAAAEAQAQAPAEQ-EKGGRSGLLGGLDDTALGPmpakVGPRGGKRETVVEALAKSA 479
|
490 500
....*....|....*....|....
gi 16132085 479 AR----QVTNQIVRGMLGSLLGGR 498
Cdd:pfam05872 480 VRsvasQVGREIVRGILGSLLRKR 503
|
|
| HerA |
COG0433 |
Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase ... |
2-388 |
1.24e-109 |
|
Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains [Replication, recombination and repair];
Pssm-ID: 440202 [Multi-domain] Cd Length: 388 Bit Score: 330.80 E-value: 1.24e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132085 2 SEPLLIAR--TPDTELFL-LPGMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGVAQAGtvseklla 78
Cdd:COG0433 23 GGGILIGKllSPGVPVYLdLDKLLNRHILILGATGSGKSNTLQVLLEELSRAGVPVLVFDPHGEYSGLAEPG-------- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132085 79 rLKNIGVNDWQPHAN---PVVVWDIFgekghpvrATVSDLGPLLLARLLNLnDVQSGVLNIIFRIADDQGLLLLDFKDLR 155
Cdd:COG0433 95 -AERADVGVFDPGAGrplPINPWDLF--------ATASELGPLLLSRLDLN-DTQRGVLREALRLADDKGLLLLDLKDLI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132085 156 AitqYIGDNAKsFQNQYGNISSASVGAIQRGLLSLEQqgAAHFFGEPMLDIKDWMRTDANgkgvINILSAEKLyqMPKLY 235
Cdd:COG0433 165 A---LLEEGEE-LGEEYGNVSAASAGALLRRLESLES--ADGLFGEPGLDLEDLLRTDGR----VTVIDLSGL--PEELQ 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132085 236 AASLLWMLSELYEQLPEAGDLE--KPKLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLG 313
Cdd:COG0433 233 STFVLWLLRELFEARPEVGDADdrKLPLVLVIDEAHLLAPAAPSALLEILERIAREGRKFGVGLILATQRPSDIDEDVLS 312
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16132085 314 QLGNrvQHALRAFTPKDQKAVKAAAQTMranpAFDTEKAIQELGTGEALISfLDAKGSPSVVERAMviaPCSRMG 388
Cdd:COG0433 313 QLGT--QIILRLFNPRDQKAVKAAAETL----SEDLLERLPSLGTGEALVL-GEGIPLPVLVKIRL---PESRPG 377
|
|
| VirB4 |
COG3451 |
Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and ... |
23-314 |
4.95e-15 |
|
Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442674 [Multi-domain] Cd Length: 546 Bit Score: 77.68 E-value: 4.95e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132085 23 NRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGVAQA--GTVSEklLARLKNIGVNdwqphanPVVVWDI 100
Cdd:COG3451 204 NGNTLILGPSGSGKSFLLKLLLLQLLRYGARIVIFDPGGSYEILVRAlgGTYID--LSPGSPTGLN-------PFDLEDT 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132085 101 FGEkghpvRATVSDlgplllarllnlndvqsgVLNIIFRIADDQglllLDFKDLRAITQYIGDNAKSFQNQYGNI----- 175
Cdd:COG3451 275 EEK-----RDFLLE------------------LLELLLGREGEP----LTPEERAAIDRAVRALYRRADPEERTTlsdly 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132085 176 ----SSASVGAIQRGLLSLEQQGA-AHFF-GEPMLDIKDwmrtdangkGVINILSAEKLYQMPKLYAASLLWMLSELYEQ 249
Cdd:COG3451 328 ellkEQPEAKDLAARLEPYTKGGSyGWLFdGPTNLDLSD---------ARFVVFDLTELLDNPELRPPVLLYLLHRIWNR 398
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16132085 250 LPEAGDlEKPKLVFFfDEAHLLFNDapQVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLGQ 314
Cdd:COG3451 399 LRKNND-GRPTLIVI-DEAWLLLDN--PAFAEFLEEWLKTLRKYNGAVIFATQSVEDFLSSPIAE 459
|
|
| VirD4 |
COG3505 |
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, ... |
25-332 |
5.77e-11 |
|
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442728 [Multi-domain] Cd Length: 402 Bit Score: 64.24 E-value: 5.77e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132085 25 HGLITGATGTGKTVTLQKLAesLSEI--GVPVFMADVKGDLTgvaqagtvsEKLLARLKNIGvndwqphaNPVVV----- 97
Cdd:COG3505 1 HVLVIGPTGSGKTVGLVIPN--LTQLarGESVVVTDPKGDLA---------ELTAGFRRRAG--------YDVYVfdpfd 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132085 98 ------WDIFGEKGHPVRAT-VSDLGPLLLARLLNLNDV-----QSGVLNIIFRIADDQG--------LLLLDFKDLRAI 157
Cdd:COG3505 62 pershrWNPLDEIRDPADAQeLAEALIPALGGGGGGDPFwreaaRALLAALILALAEEGRrtladvyrLLSEPEEELREL 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132085 158 TQYIGDNAKSF-QNQYGNISSAS-------VGAIQRGLLSLEQQGAAHFFGEPMLDIKDWMRtdanGKGVINILSAEKLY 229
Cdd:COG3505 142 LEALPESPHPPvADTLAAFLNAAektrssvLSTLASALELLSDPEVAALTSGSDFDLRDLIR----EKGTLYLVLPPDDL 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132085 230 QMPKLYAASLLWML-SELYEQLPEAGDLeKPKLVFFFDEAHLLfndapqVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIP 308
Cdd:COG3505 218 STLAPLLRLLLSQLiRALLRRAERSGRL-PRPVLLLLDEFANL------GRLPSLETLLATGRGYGIRLVLILQSLAQLE 290
|
330 340 350
....*....|....*....|....*....|..
gi 16132085 309 D--------NVLGQLGNRVqhalrAFTPKDQK 332
Cdd:COG3505 291 AiygeegaeTILGNCGTKI-----FLGVNDPE 317
|
|
| TrwB_TraG_TraD_VirD4 |
cd01127 |
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are ... |
198-307 |
9.07e-07 |
|
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion (T4S) systems, versatile bacterial secretion systems mediating transport of protein and/or DNA. They are present in gram-negative and gram-positive bacteria, as well as archaea. They form hexameric rings and belong to the RecA-like NTPases superfamily, which also includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases.
Pssm-ID: 410871 [Multi-domain] Cd Length: 144 Bit Score: 48.37 E-value: 9.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132085 198 FFGEPMLDIkdWMR------TDANGKGVINILSAEKlyQMPKLYAASLLWMLSELYEQLPEAGDLEKPKLVFFFDEAHLL 271
Cdd:cd01127 15 SIVIPLLDQ--AARggsviiTDPKGELFLVIPDRDD--SFAALRALFFNQLFRALTELASLSPGRLPRRVWFILDEFANL 90
|
90 100 110
....*....|....*....|....*....|....*.
gi 16132085 272 fndapqVLLDKIEQVIRLIRSKGVGVWFVSQNPSDI 307
Cdd:cd01127 91 ------GRIPNLPNLLATGRKRGISVVLILQSLAQL 120
|
|
| ExeA |
COG3267 |
Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, ... |
8-58 |
1.69e-03 |
|
Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442498 [Multi-domain] Cd Length: 261 Bit Score: 40.16 E-value: 1.69e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16132085 8 ARTPDTELF------------LLPGMANRHG--LITGATGTGKTVTLQKLAESLSEIGVPVFMAD 58
Cdd:COG3267 14 SLTPDPRFLflspshrealarLEYALAQGGGfvVLTGEVGTGKTTLLRRLLERLPDDVKVAYIPN 78
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
24-62 |
1.96e-03 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 38.48 E-value: 1.96e-03
10 20 30
....*....|....*....|....*....|....*....
gi 16132085 24 RHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGD 62
Cdd:pfam13401 6 GILVLTGESGTGKTTLLRRLLEQLPEVRDSVVFVDLPSG 44
|
|
| TrwB_AAD_bind |
pfam10412 |
Type IV secretion-system coupling protein DNA-binding domain; The plasmid conjugative coupling ... |
4-107 |
2.79e-03 |
|
Type IV secretion-system coupling protein DNA-binding domain; The plasmid conjugative coupling protein TrwB forms hexamers from six structurally very similar protomers. This hexamer contains a central channel running from the cytosolic pole (made up by the AADs) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB_AAD (all-alpha domain) domain appears to be the DNA-binding domain of the structure. TrwB, a basic integral inner-membrane nucleoside-triphosphate-binding protein, is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells and export.
Pssm-ID: 431268 [Multi-domain] Cd Length: 386 Bit Score: 39.97 E-value: 2.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132085 4 PLLIARTPdtelfLLPGMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGvAQAGTVSEKLLArlkni 83
Cdd:pfam10412 1 RYTIAGVP-----LPKRSETRHTLIIGTTGSGKTQALRGLLDQARARGDRAIIFDLTGAFTE-RFYDPGRDILLN----- 69
|
90 100
....*....|....*....|....
gi 16132085 84 gvndwqPHANPVVVWDIFGEKGHP 107
Cdd:pfam10412 70 ------PLDARSPAWSPFAECKTP 87
|
|
| cdc6 |
PRK00411 |
ORC1-type DNA replication protein; |
27-54 |
4.82e-03 |
|
ORC1-type DNA replication protein;
Pssm-ID: 234751 [Multi-domain] Cd Length: 394 Bit Score: 39.45 E-value: 4.82e-03
10 20
....*....|....*....|....*...
gi 16132085 27 LITGATGTGKTVTLQKLAESLSEIGVPV 54
Cdd:PRK00411 59 LIYGPPGTGKTTTVKKVFEELEEIAVKV 86
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
27-82 |
6.52e-03 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 37.51 E-value: 6.52e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 16132085 27 LITGATGTGKTVTLQKLAESLSEIGVPVF---MADVKGDLTGVAQAGTVSEKLLARLKN 82
Cdd:cd00009 23 LLYGPPGTGKTTLARAIANELFRPGAPFLylnASDLLEGLVVAELFGHFLVRLLFELAE 81
|
|
| TrwB_TraG_TraD_VirD4 |
cd01127 |
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are ... |
25-63 |
7.21e-03 |
|
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion (T4S) systems, versatile bacterial secretion systems mediating transport of protein and/or DNA. They are present in gram-negative and gram-positive bacteria, as well as archaea. They form hexameric rings and belong to the RecA-like NTPases superfamily, which also includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases.
Pssm-ID: 410871 [Multi-domain] Cd Length: 144 Bit Score: 37.20 E-value: 7.21e-03
10 20 30
....*....|....*....|....*....|....*....
gi 16132085 25 HGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDL 63
Cdd:cd01127 1 NTLVLGTTGSGKTTSIVIPLLDQAARGGSVIITDPKGEL 39
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
27-58 |
9.35e-03 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 36.97 E-value: 9.35e-03
10 20 30
....*....|....*....|....*....|..
gi 16132085 27 LITGATGTGKTVTLQKLAESLSEIGVPVFMAD 58
Cdd:smart00382 6 LIVGPPGSGKTTLARALARELGPPGGGVIYID 37
|
|
| |
