|
Name |
Accession |
Description |
Interval |
E-value |
| PRK07952 |
PRK07952 |
DNA replication protein DnaC; Validated |
1-244 |
4.76e-178 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 181180 [Multi-domain] Cd Length: 244 Bit Score: 488.51 E-value: 4.76e-178
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 1 MKNVGDLMQRLQKMMPAHIKPAFKTGEELLAWQKEQGAIRSAALERENRAMKMQRTFNRSGIRPLHQNCSFENYRVECEG 80
Cdd:PRK07952 1 MKNVGDLMQRLQKMMPAHIKPAFKTGEELLAWQKEQGRIRSAALERENRAMKMQRTFNRSGIRPLHQNCSFENYRVECEG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 81 QMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFRNSGTSEEQLLNDL 160
Cdd:PRK07952 81 QMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 161 SNVDLLVIDEIGVQTESKYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGERVMDRMRLGNSLWVIFNWDSYRSRV 240
Cdd:PRK07952 161 SNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGERVMDRMRLGNSLWVIFNWDSYRSRV 240
|
....
gi 16132182 241 TGKE 244
Cdd:PRK07952 241 TGKE 244
|
|
| DnaC |
COG1484 |
DNA replication protein DnaC [Replication, recombination and repair]; |
45-239 |
1.46e-23 |
|
DNA replication protein DnaC [Replication, recombination and repair];
Pssm-ID: 441093 [Multi-domain] Cd Length: 242 Bit Score: 94.85 E-value: 1.46e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 45 ERENRamKMQRTFNRSGIRPlhqNCSFENYRVEC-----EGQMNALSKARqYVEEfDGNIasfIFSGKPGTGKNHLAAAI 119
Cdd:COG1484 50 EREQR--RIERRLKAARFPA---AKTLEDFDFDAqpgldRRQILELATLD-FIER-GENL---ILLGPPGTGKTHLAIAL 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 120 CNELLLRGKSVLIITVADIMSAMKDTfRNSGTSEEqLLNDLSNVDLLVIDEIGVQTESKYEKVIINQIVDRRsSSKRPTg 199
Cdd:COG1484 120 GHEACRAGYRVRFTTAPDLVNELKEA-RADGRLER-LLKRLAKVDLLILDELGYLPLDAEGAELLFELISDR-YERRST- 195
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 16132182 200 MLTnSN--MEEMTKLLGERVM-----DRMrLGNSLWVIFNWDSYRSR 239
Cdd:COG1484 196 IIT-SNlpFSEWGEVFGDPTLatailDRL-VHHAHIIELKGESYRLK 240
|
|
| IS21_help_AAA |
NF038214 |
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ... |
103-239 |
4.56e-16 |
|
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.
Pssm-ID: 439516 Cd Length: 232 Bit Score: 74.43 E-value: 4.56e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 103 IFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKdTFRNSGtSEEQLLNDLSNVDLLVIDEIGvqteskYEKV 182
Cdd:NF038214 94 LLLGPPGTGKTHLAIALGYAACRQGYRVRFTTAADLVEQLA-QARADG-RLGRLLRRLARYDLLIIDELG------YLPF 165
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 183 IIN------QIVDRRsSSKRPTgMLTnSNM--EEMTKLLGERVM-----DRMrLGNSLWVIFNWDSYRSR 239
Cdd:NF038214 166 SREganllfELIADR-YERGST-IIT-SNLpfSEWGEVFGDPTLaaailDRL-VHHAHILELKGESYRLK 231
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
80-172 |
1.05e-13 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 66.40 E-value: 1.05e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 80 GQMNALSKARQYVEEFDGNiaSFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKD--TFRNSGTSEEQLL 157
Cdd:cd00009 2 GQEEAIEALREALELPPPK--NLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVaeLFGHFLVRLLFEL 79
|
90
....*....|....*
gi 16132182 158 NDLSNVDLLVIDEIG 172
Cdd:cd00009 80 AEKAKPGVLFIDEID 94
|
|
| IstB_IS21 |
pfam01695 |
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is ... |
95-239 |
1.36e-12 |
|
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Pssm-ID: 426385 [Multi-domain] Cd Length: 238 Bit Score: 65.16 E-value: 1.36e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 95 FDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFRNSgtSEEQLLNDLSNVDLLVIDEIGVQ 174
Cdd:pfam01695 88 FIDRAQNVVLLGPPGVGKTHLAIALGVEACRAGYSVRFTSAADLVNQLKRAHGDG--KLTRKLQQLLKPDVLILDEWGYL 165
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 175 TESKYEKVIINQIVDRRsSSKRPTGMLTNSNMEEMTKLLGERVM-----DRMrLGNSLWVIFNWDSYRSR 239
Cdd:pfam01695 166 PLDQAEANLLFQVISKR-YEHRSIILTSNLPFGEWGQVFGDAVLatailDRL-LHHCHIVPIKGESYRLK 233
|
|
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
11-171 |
2.76e-09 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 56.77 E-value: 2.76e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 11 LQKMMPAHIKPAFKTGEEllawqKEQGAIRSAALERENRamkmQRTFNRSGIRPLHQNCSFENYrVECEGQMNALSKARQ 90
Cdd:TIGR00362 59 LQELFGAEIEIEFTVGED-----EEELEPNSKKPEPAPP----EAPAPPSSASGLNPKYTFDNF-VVGKSNRLAHAAALA 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 91 yVEEFDGNIAS--FIFsGKPGTGKNHLAAAICNELLLR--GKSVLIITVADIMSAMKDTFRNSGTseEQLLNDLSNVDLL 166
Cdd:TIGR00362 129 -VAENPGKAYNplFIY-GGVGLGKTHLLHAIGNEILENnpNAKVLYVSSEKFTNDFVNALRNNKM--EEFKEKYRSVDLL 204
|
....*
gi 16132182 167 VIDEI 171
Cdd:TIGR00362 205 LIDDI 209
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
103-227 |
4.55e-09 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 53.53 E-value: 4.55e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 103 IFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFRNSGTSEEQLLND-------------LSNVDLLVID 169
Cdd:smart00382 6 LIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSgelrlrlalalarKLKPDVLILD 85
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16132182 170 EIGVQTESKYEKVIINQIVDRRSSSKRPTG-----MLTNSNMEEMTKLLGERVMDRMRLGNSL 227
Cdd:smart00382 86 EITSLLDAEQEALLLLLEELRLLLLLKSEKnltviLTTNDEKDLGPALLRRRFDRRIVLLLIL 148
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK07952 |
PRK07952 |
DNA replication protein DnaC; Validated |
1-244 |
4.76e-178 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 181180 [Multi-domain] Cd Length: 244 Bit Score: 488.51 E-value: 4.76e-178
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 1 MKNVGDLMQRLQKMMPAHIKPAFKTGEELLAWQKEQGAIRSAALERENRAMKMQRTFNRSGIRPLHQNCSFENYRVECEG 80
Cdd:PRK07952 1 MKNVGDLMQRLQKMMPAHIKPAFKTGEELLAWQKEQGRIRSAALERENRAMKMQRTFNRSGIRPLHQNCSFENYRVECEG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 81 QMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFRNSGTSEEQLLNDL 160
Cdd:PRK07952 81 QMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 161 SNVDLLVIDEIGVQTESKYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGERVMDRMRLGNSLWVIFNWDSYRSRV 240
Cdd:PRK07952 161 SNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGERVMDRMRLGNSLWVIFNWDSYRSRV 240
|
....
gi 16132182 241 TGKE 244
Cdd:PRK07952 241 TGKE 244
|
|
| PRK12377 |
PRK12377 |
putative replication protein; Provisional |
1-240 |
3.33e-106 |
|
putative replication protein; Provisional
Pssm-ID: 183482 [Multi-domain] Cd Length: 248 Bit Score: 307.15 E-value: 3.33e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 1 MKNV--GDLMQRLQKMMPAHIKPAFKTGEELLAWQKEQGAIRSAALERENRAMKMQRTFNRSGIRPLHQNCSFENYRVEC 78
Cdd:PRK12377 1 MKNIatGGVLERIRRLAPQGVQPPFRTVDEWREWQLAEGRKRSEEINRQNQQLRVEKILNRSGIQPLHRKCSFANYQVQN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFRNsGTSEEQLLN 158
Cdd:PRK12377 81 DGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDN-GQSGEKFLQ 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 159 DLSNVDLLVIDEIGVQTESKYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGERVMDRMRLGNSLWVIFNWDSYRS 238
Cdd:PRK12377 160 ELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAMSTLLGERVMDRMTMNGGRWVNFNWESWRP 239
|
..
gi 16132182 239 RV 240
Cdd:PRK12377 240 NV 241
|
|
| PRK08116 |
PRK08116 |
hypothetical protein; Validated |
33-221 |
2.68e-32 |
|
hypothetical protein; Validated
Pssm-ID: 236153 [Multi-domain] Cd Length: 268 Bit Score: 118.58 E-value: 2.68e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 33 QKEQGAIRSAALERENRAMKMQRTFNRSGIRPLHQNCSFENYRVEcEGQMNALSKARQYVEEFDGNIAS---FIFSGKPG 109
Cdd:PRK08116 46 EREAEEAKEREEENREKQRRIERLKSNSLLDEKFRNSTFENFLFD-KGSEKAYKIARKYVKKFEEMKKEnvgLLLWGSVG 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 110 TGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFRNSGTSEE-QLLNDLSNVDLLVIDEIGVQTESKYEKVIINQIV 188
Cdd:PRK08116 125 TGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDEnEIIRSLVNADLLILDDLGAERDTEWAREKVYNII 204
|
170 180 190
....*....|....*....|....*....|...
gi 16132182 189 DRRSSSKRPTGMLTNSNMEEMTKLLGERVMDRM 221
Cdd:PRK08116 205 DSRYRKGLPTIVTTNLSLEELKNQYGKRIYDRI 237
|
|
| DnaC |
COG1484 |
DNA replication protein DnaC [Replication, recombination and repair]; |
45-239 |
1.46e-23 |
|
DNA replication protein DnaC [Replication, recombination and repair];
Pssm-ID: 441093 [Multi-domain] Cd Length: 242 Bit Score: 94.85 E-value: 1.46e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 45 ERENRamKMQRTFNRSGIRPlhqNCSFENYRVEC-----EGQMNALSKARqYVEEfDGNIasfIFSGKPGTGKNHLAAAI 119
Cdd:COG1484 50 EREQR--RIERRLKAARFPA---AKTLEDFDFDAqpgldRRQILELATLD-FIER-GENL---ILLGPPGTGKTHLAIAL 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 120 CNELLLRGKSVLIITVADIMSAMKDTfRNSGTSEEqLLNDLSNVDLLVIDEIGVQTESKYEKVIINQIVDRRsSSKRPTg 199
Cdd:COG1484 120 GHEACRAGYRVRFTTAPDLVNELKEA-RADGRLER-LLKRLAKVDLLILDELGYLPLDAEGAELLFELISDR-YERRST- 195
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 16132182 200 MLTnSN--MEEMTKLLGERVM-----DRMrLGNSLWVIFNWDSYRSR 239
Cdd:COG1484 196 IIT-SNlpFSEWGEVFGDPTLatailDRL-VHHAHIIELKGESYRLK 240
|
|
| PRK06835 |
PRK06835 |
DNA replication protein DnaC; Validated |
83-220 |
3.48e-22 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 235871 [Multi-domain] Cd Length: 329 Bit Score: 93.04 E-value: 3.48e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 83 NALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFRNSGTSEEQLLNDLSN 162
Cdd:PRK06835 167 KILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLIN 246
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 16132182 163 VDLLVIDEIGVQTESKYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGERVMDR 220
Cdd:PRK06835 247 CDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYSERISSR 304
|
|
| IS21_help_AAA |
NF038214 |
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ... |
103-239 |
4.56e-16 |
|
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.
Pssm-ID: 439516 Cd Length: 232 Bit Score: 74.43 E-value: 4.56e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 103 IFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKdTFRNSGtSEEQLLNDLSNVDLLVIDEIGvqteskYEKV 182
Cdd:NF038214 94 LLLGPPGTGKTHLAIALGYAACRQGYRVRFTTAADLVEQLA-QARADG-RLGRLLRRLARYDLLIIDELG------YLPF 165
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 183 IIN------QIVDRRsSSKRPTgMLTnSNM--EEMTKLLGERVM-----DRMrLGNSLWVIFNWDSYRSR 239
Cdd:NF038214 166 SREganllfELIADR-YERGST-IIT-SNLpfSEWGEVFGDPTLaaailDRL-VHHAHILELKGESYRLK 231
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
80-172 |
1.05e-13 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 66.40 E-value: 1.05e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 80 GQMNALSKARQYVEEFDGNiaSFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKD--TFRNSGTSEEQLL 157
Cdd:cd00009 2 GQEEAIEALREALELPPPK--NLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVaeLFGHFLVRLLFEL 79
|
90
....*....|....*
gi 16132182 158 NDLSNVDLLVIDEIG 172
Cdd:cd00009 80 AEKAKPGVLFIDEID 94
|
|
| IstB_IS21 |
pfam01695 |
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is ... |
95-239 |
1.36e-12 |
|
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Pssm-ID: 426385 [Multi-domain] Cd Length: 238 Bit Score: 65.16 E-value: 1.36e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 95 FDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFRNSgtSEEQLLNDLSNVDLLVIDEIGVQ 174
Cdd:pfam01695 88 FIDRAQNVVLLGPPGVGKTHLAIALGVEACRAGYSVRFTSAADLVNQLKRAHGDG--KLTRKLQQLLKPDVLILDEWGYL 165
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 175 TESKYEKVIINQIVDRRsSSKRPTGMLTNSNMEEMTKLLGERVM-----DRMrLGNSLWVIFNWDSYRSR 239
Cdd:pfam01695 166 PLDQAEANLLFQVISKR-YEHRSIILTSNLPFGEWGQVFGDAVLatailDRL-LHHCHIVPIKGESYRLK 233
|
|
| PRK06921 |
PRK06921 |
hypothetical protein; Provisional |
52-236 |
1.08e-10 |
|
hypothetical protein; Provisional
Pssm-ID: 180750 [Multi-domain] Cd Length: 266 Bit Score: 60.18 E-value: 1.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 52 KMQRTFNRSGIRPLHQNCSFENYRVECEGQM--NALSKARQYVEEFDgNIA-----SFIFSGKPGTGKNHLAAAICNELL 124
Cdd:PRK06921 64 KIERLLKASEITEAFRKLTFKNFKTEGKPQAikDAYECAVEYVKDFE-KIQesrknSIALLGQPGSGKTHLLTAAANELM 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 125 LR-GKSVLIITVADIMSAMKDTFRNSgtseEQLLNDLSNVDLLVIDEI-----GVQTESKYEKVIINQIVDRRSSSKRPT 198
Cdd:PRK06921 143 RKkGVPVLYFPFVEGFGDLKDDFDLL----EAKLNRMKKVEVLFIDDLfkpvnGKPRATEWQIEQMYSVLNYRYLNHKPI 218
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 16132182 199 GMLTNSNMEEMTKL---LGERVMDRmrlGNSLWVIFNWDSY 236
Cdd:PRK06921 219 LISSELTIDELLDIdeaLGSRIVEM---CKDYLVIIKGDSF 256
|
|
| PRK08939 |
PRK08939 |
primosomal protein DnaI; Reviewed |
18-222 |
2.02e-10 |
|
primosomal protein DnaI; Reviewed
Pssm-ID: 236353 [Multi-domain] Cd Length: 306 Bit Score: 59.50 E-value: 2.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 18 HIKPAFKTGEELLAWQKEQgairsaALERENRAMKMQRTfnrsgIRplhqNCSFENYRVECEGQMNALSKARQYVEEF-- 95
Cdd:PRK08939 88 YIDVSYLPTPEKIEADEEK------AIKKRIQSIYMPKD-----LL----QASLADIDLDDRDRLDALMAALDFLEAYpp 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 96 DGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFrNSGTSEEQlLNDLSNVDLLVIDEIGVQT 175
Cdd:PRK08939 153 GEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSI-SDGSVKEK-IDAVKEAPVLMLDDIGAEQ 230
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16132182 176 ESKY---EkvIINQIVDRRSSSKRPTGMLTNSNMEEMTKLL-----GE-------RVMDRMR 222
Cdd:PRK08939 231 MSSWvrdE--VLGVILQYRMQEELPTFFTSNFDFDELEHHLaytqrGEdetwkaaRIMERIR 290
|
|
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
11-171 |
2.76e-09 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 56.77 E-value: 2.76e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 11 LQKMMPAHIKPAFKTGEEllawqKEQGAIRSAALERENRamkmQRTFNRSGIRPLHQNCSFENYrVECEGQMNALSKARQ 90
Cdd:TIGR00362 59 LQELFGAEIEIEFTVGED-----EEELEPNSKKPEPAPP----EAPAPPSSASGLNPKYTFDNF-VVGKSNRLAHAAALA 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 91 yVEEFDGNIAS--FIFsGKPGTGKNHLAAAICNELLLR--GKSVLIITVADIMSAMKDTFRNSGTseEQLLNDLSNVDLL 166
Cdd:TIGR00362 129 -VAENPGKAYNplFIY-GGVGLGKTHLLHAIGNEILENnpNAKVLYVSSEKFTNDFVNALRNNKM--EEFKEKYRSVDLL 204
|
....*
gi 16132182 167 VIDEI 171
Cdd:TIGR00362 205 LIDDI 209
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
65-171 |
3.05e-09 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 55.97 E-value: 3.05e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 65 LHQNCSFENYrVECEGQMNALSKARQyVEEFDGNIASFIF-SGKPGTGKNHLAAAICNELLLR--GKSVLIITVADIMSA 141
Cdd:COG0593 1 LNPRYTFDNF-VVGPSNRLAHAAALA-VAEWPGKAYNPLFlYGGVGLGKTHLLHAIGNEALENnpGARVVYLTAEEFTND 78
|
90 100 110
....*....|....*....|....*....|
gi 16132182 142 MKDTFRNSGTseEQLLNDLSNVDLLVIDEI 171
Cdd:COG0593 79 FINAIRNNTI--EEFKEKYRSVDVLLIDDI 106
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
103-227 |
4.55e-09 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 53.53 E-value: 4.55e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 103 IFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFRNSGTSEEQLLND-------------LSNVDLLVID 169
Cdd:smart00382 6 LIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSgelrlrlalalarKLKPDVLILD 85
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16132182 170 EIGVQTESKYEKVIINQIVDRRSSSKRPTG-----MLTNSNMEEMTKLLGERVMDRMRLGNSL 227
Cdd:smart00382 86 EITSLLDAEQEALLLLLEELRLLLLLKSEKnltviLTTNDEKDLGPALLRRRFDRRIVLLLIL 148
|
|
| PRK08181 |
PRK08181 |
transposase; Validated |
45-239 |
2.99e-07 |
|
transposase; Validated
Pssm-ID: 136670 [Multi-domain] Cd Length: 269 Bit Score: 49.93 E-value: 2.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 45 ERENRamKMQRTFNRSGIRP--LHQNCSFENYRVECEGQMNALSKARQYVeefdGNIASFIFSGKPGTGKNHLAAAICNE 122
Cdd:PRK08181 56 ERARR--RIERHLAEAHLPPgkTLDSFDFEAVPMVSKAQVMAIAAGDSWL----AKGANLLLFGPPGGGKSHLAAAIGLA 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 123 LLLRGKSVLIITVADIMSAMKDTFRNSGTseEQLLNDLSNVDLLVIDEIGVQTESKYEKVIINQIVDRRssSKRPTGMLT 202
Cdd:PRK08181 130 LIENGWRVLFTRTTDLVQKLQVARRELQL--ESAIAKLDKFDLLILDDLAYVTKDQAETSVLFELISAR--YERRSILIT 205
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 16132182 203 -NSNMEEMTKLLGERVM-----DRMrLGNSLWVIFNWDSYRSR 239
Cdd:PRK08181 206 aNQPFGEWNRVFPDPAMtlaavDRL-VHHATIFEMNVESYRRR 247
|
|
| DEXXQc_SF1 |
cd18043 |
DEXXQ-box helicase domain of Superfamily 1 helicases; Superfamily 1 (SF1) helicases are ... |
101-170 |
1.94e-05 |
|
DEXXQ-box helicase domain of Superfamily 1 helicases; Superfamily 1 (SF1) helicases are nucleic acid motor proteins that couple ATP hydrolysis to translocation along with the concomitant unwinding of DNA or RNA. This is central to many aspects of cellular DNA and RNA metabolism and accordingly, they are implicated in a wide range of nucleic acid processing events including DNA replication, recombination, and repair as well as many aspects of RNA metabolism. Superfamily 1 helicases are members of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350801 [Multi-domain] Cd Length: 127 Bit Score: 42.96 E-value: 1.94e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16132182 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIitVADIMSAMKDTFRN----SGTSEEQLLNDLSNV-DLLVIDE 170
Cdd:cd18043 16 NVVIQGPPGTGKSQTIANIIANALARGKRVLF--VSEKKAALDVVRFPcwimSPLSVSQYLPLNRNLfDLVIFDE 88
|
|
| PRK06526 |
PRK06526 |
transposase; Provisional |
42-172 |
7.67e-05 |
|
transposase; Provisional
Pssm-ID: 180607 Cd Length: 254 Bit Score: 42.93 E-value: 7.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 42 AALERENRAMKMQRTFNRSGIRPLHQNCSFENYRVEC-------------EGQMNALS-KARQYVEEFDGN--------- 98
Cdd:PRK06526 6 AYLTRALKAPTLAGAVERLAERARAESWSHEEFLAAClqrevaareshggEGRIRAARfPARKSLEEFDFDhqrslkrdt 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 99 IA------------SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTfRNSGTSEEQLLNdLSNVDLL 166
Cdd:PRK06526 86 IAhlgtldfvtgkeNVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAA-HHAGRLQAELVK-LGRYPLL 163
|
....*.
gi 16132182 167 VIDEIG 172
Cdd:PRK06526 164 IVDEVG 169
|
|
| DEXXQc_Upf1-like |
cd17934 |
DEXXQ-box helicase domain of Upf1-like helicase; The Upf1-like helicase family includes UPF1, ... |
106-177 |
7.98e-05 |
|
DEXXQ-box helicase domain of Upf1-like helicase; The Upf1-like helicase family includes UPF1, HELZ, Mov10L1, Aquarius, IGHMBP2 (SMUBP2), coronavirus Nsp13, and similar proteins. They belong to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 438708 [Multi-domain] Cd Length: 121 Bit Score: 41.07 E-value: 7.98e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16132182 106 GKPGTGKNHLAAAICNELL--LRGKSVLIitVADIMSAMKdtfrnsgtseeqllndlsNVDLLVIDEIGVQTES 177
Cdd:cd17934 6 GPPGTGKTTTIAAIVLQLLkgLRGKRVLV--TAQSNVAVD------------------NVDVVIIDEASQITEP 59
|
|
| RecA-like_CDC48_NLV2_r1-like |
cd19503 |
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and ... |
103-171 |
1.36e-04 |
|
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and p97 or VCP metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the first of the two ATPase domains. This subfamily also includes the first of the two ATPase domains of NVL (nuclear VCP-like protein) 2, an isoform of NVL mainly present in the nucleolus, which is involved in ribosome biogenesis, in telomerase assembly and the regulation of telomerase activity, and in pre-rRNA processing. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410911 [Multi-domain] Cd Length: 165 Bit Score: 41.12 E-value: 1.36e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16132182 103 IFSGKPGTGKNHLAAAICNELllrGKSVLIITVADIMSAMkdtfrnSGTSEEQL---LNDLSNV--DLLVIDEI 171
Cdd:cd19503 38 LLHGPPGTGKTLLARAVANEA---GANFLSISGPSIVSKY------LGESEKNLreiFEEARSHapSIIFIDEI 102
|
|
| PRK09183 |
PRK09183 |
transposase/IS protein; Provisional |
103-191 |
1.75e-04 |
|
transposase/IS protein; Provisional
Pssm-ID: 181681 Cd Length: 259 Bit Score: 41.61 E-value: 1.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 103 IFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMkDTFRNSGTSEEQLLNDLSNVDLLVIDEIGVQTESKYEKV 182
Cdd:PRK09183 106 VLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQL-STAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQEEAN 184
|
....*....
gi 16132182 183 IINQIVDRR 191
Cdd:PRK09183 185 LFFQVIAKR 193
|
|
| RecA-like_protease |
cd19481 |
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ... |
101-188 |
2.19e-04 |
|
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410889 [Multi-domain] Cd Length: 158 Bit Score: 40.34 E-value: 2.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 101 SFIFSGKPGTGKNHLAAAICNELllrGKSVLIITVADIMSamkdtfRNSGTSEE------QLLNDLSNVdLLVIDEI--- 171
Cdd:cd19481 28 GILLYGPPGTGKTLLAKALAGEL---GLPLIVVKLSSLLS------KYVGESEKnlrkifERARRLAPC-ILFIDEIdai 97
|
90 100
....*....|....*....|.
gi 16132182 172 ----GVQTESKYEKVIINQIV 188
Cdd:cd19481 98 grkrDSSGESGELRRVLNQLL 118
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
103-188 |
2.24e-04 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 41.82 E-value: 2.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 103 IFSGKPGTGKNHLAAAICNELllrGKSVLIITVADIMS--------AMKDTFRnsgtseeqLLNDLSNVdLLVIDEI--- 171
Cdd:COG0464 195 LLYGPPGTGKTLLARALAGEL---GLPLIEVDLSDLVSkyvgetekNLREVFD--------KARGLAPC-VLFIDEAdal 262
|
90 100
....*....|....*....|
gi 16132182 172 ---GVQTESKYEKVIINQIV 188
Cdd:COG0464 263 agkRGEVGDGVGRRVVNTLL 282
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
65-176 |
2.83e-04 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 40.77 E-value: 2.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 65 LHQNCSFENYrVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELL--LRGKSVLIITVADIMSAM 142
Cdd:pfam00308 1 LNPRYTFENF-VIGPSNRFAHAAALTVAKAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALqnAPNLRVVYLTAEEFLNDF 79
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 16132182 143 KDTFRNSGTseEQLLNDLSNVDLLVIDEI-------GVQTE 176
Cdd:pfam00308 80 VDAIRDNKT--NQFKEKYRNVDVLLIDDIqflagkeGTQEE 118
|
|
| 44 |
PHA02544 |
clamp loader, small subunit; Provisional |
89-170 |
1.26e-03 |
|
clamp loader, small subunit; Provisional
Pssm-ID: 222866 [Multi-domain] Cd Length: 316 Bit Score: 39.20 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 89 RQYVEefDGNIASFIF-SGKPGTGKNHLAAAICNELllrGKSVLIITVADimsAMKDTFRNsgtseeQLLNDLSNVDL-- 165
Cdd:PHA02544 34 KSIVK--KGRIPNMLLhSPSPGTGKTTVAKALCNEV---GAEVLFVNGSD---CRIDFVRN------RLTRFASTVSLtg 99
|
....*....
gi 16132182 166 ----LVIDE 170
Cdd:PHA02544 100 ggkvIIIDE 108
|
|
| RecA-like_NVL_r1-like |
cd19518 |
first of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL ... |
102-188 |
2.36e-03 |
|
first of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL exists in two forms with N-terminal extensions of different lengths in mammalian cells. NVL has two alternatively spliced isoforms, a short form, NVL1, and a long form, NVL2. NVL2, the major species, is mainly present in the nucleolus, whereas NVL1 is nucleoplasmic. Each has an N-terminal domain, followed by two tandem ATPase domains; this subfamily includes the first of the two ATPase domains. NVL2 is involved in the biogenesis of the 60S ribosome subunit by associating specifically with ribosome protein L5 and modulating the function of DOB1. NVL2 is also required for telomerase assembly and the regulation of telomerase activity, and is involved in pre-rRNA processing. The role of NVL1 is unclear. This RecA-like_NVL_r1-like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410926 [Multi-domain] Cd Length: 169 Bit Score: 37.77 E-value: 2.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 102 FIFSGKPGTGKNHLAAAICNELllrGKSVLIITVADIMSAMkdtfrnSGTSEEQLLNDLSNVD-----LLVIDEIGV--- 173
Cdd:cd19518 37 VLLHGPPGCGKTMLANAIAGEL---KVPFLKISATEIVSGV------SGESEEKIRELFDQAIsnapcIVFIDEIDAitp 107
|
90
....*....|....*...
gi 16132182 174 --QTESK-YEKVIINQIV 188
Cdd:cd19518 108 krESAQReMERRIVSQLL 125
|
|
| DEXSc_RecD-like |
cd17933 |
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1. ... |
80-172 |
2.70e-03 |
|
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1.11.5, Exonuclease V) complex. It is the alpha chain of the complex and functions as a 3'-5' helicase. The RecBCD enzyme is both a helicase that unwinds, or separates the strands of DNA, and a nuclease that makes single-stranded nicks in DNA. RecD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350691 [Multi-domain] Cd Length: 155 Bit Score: 37.15 E-value: 2.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 80 GQMNALSKArqyveeFDGNIasFIFSGKPGTGKNHLAAAICNELLLRGKSVLI-------------ITVAD---IMSAMK 143
Cdd:cd17933 1 EQKAAVRLV------LRNRV--SVLTGGAGTGKTTTLKALLAALEAEGKRVVLaaptgkaakrlseSTGIEastIHRLLG 72
|
90 100
....*....|....*....|....*....
gi 16132182 144 DTFRnsGTSEEQLLNDLSNVDLLVIDEIG 172
Cdd:cd17933 73 INPG--GGGFYYNEENPLDADLLIVDEAS 99
|
|
| DEXSc_Pif1_like |
cd18037 |
DEAD-box helicase domain of Pif1; Pif1 and other members of this family are RecD-like ... |
104-171 |
2.85e-03 |
|
DEAD-box helicase domain of Pif1; Pif1 and other members of this family are RecD-like helicases involved in maintaining genome stability through unwinding double-stranded DNAs (dsDNAs), DNA/RNA hybrids, and G quadruplex (G4) structures. The members of Pif1 helicase subfamily studied so far all appear to contribute to telomere maintenance. Pif1 is a member of the DEAD-like helicases superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350795 [Multi-domain] Cd Length: 183 Bit Score: 37.61 E-value: 2.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 104 FSGKPGTGKNHLAAAICNELLLRGKSVlIIT----VA---------------DIMSAMKDTFRNSGTSEEQLLNDLSNVD 164
Cdd:cd18037 17 FTGSAGTGKSYLLRRIIRALPSRPKRV-AVTastgIAacniggttlhsfagiGLGSEPAEDLLERVKRSPYLVQRWRKCD 95
|
....*..
gi 16132182 165 LLVIDEI 171
Cdd:cd18037 96 VLIIDEI 102
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
103-171 |
4.64e-03 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 36.03 E-value: 4.64e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16132182 103 IFSGKPGTGKNHLAAAICNELllrGKSVLIITVADIMSAMkdtfrnSGTSEEQLLNDLSNV-----DLLVIDEI 171
Cdd:pfam00004 2 LLYGPPGTGKTTLAKAVAKEL---GAPFIEISGSELVSKY------VGESEKRLRELFEAAkklapCVIFIDEI 66
|
|
| CDC6 |
COG1474 |
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair]; |
76-222 |
5.36e-03 |
|
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];
Pssm-ID: 441083 [Multi-domain] Cd Length: 389 Bit Score: 37.52 E-value: 5.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 76 VECEGQMNALSKARQYVeeFDGNIASFIF-SGKPGTGKNHLAAAICNEL----LLRGKSVLII--------TVADIMSAM 142
Cdd:COG1474 29 PHREEEIEELASALRPA--LRGERPSNVLiYGPTGTGKTAVAKYVLEELeeeaEERGVDVRVVyvncrqasTRYRVLSRI 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132182 143 KDTFR------NSGTSEEQLLNDLSNVD-------LLVIDEIGVQTESKYEKvIINQIVDRRSS-SKRPTGMLTNSNMEE 208
Cdd:COG1474 107 LEELGsgedipSTGLSTDELFDRLYEALderdgvlVVVLDEIDYLVDDEGDD-LLYQLLRANEElEGARVGVIGISNDLE 185
|
170
....*....|....
gi 16132182 209 MTKLLGERVMDRMR 222
Cdd:COG1474 186 FLENLDPRVKSSLG 199
|
|
| rfc |
PRK00440 |
replication factor C small subunit; Reviewed |
71-124 |
6.46e-03 |
|
replication factor C small subunit; Reviewed
Pssm-ID: 234763 [Multi-domain] Cd Length: 319 Bit Score: 37.16 E-value: 6.46e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 16132182 71 FENYRV----ECEGQMNALSKARQYVEEfdGNIASFIFSGKPGTGKNHLAAAICNELL 124
Cdd:PRK00440 8 VEKYRPrtldEIVGQEEIVERLKSYVKE--KNMPHLLFAGPPGTGKTTAALALARELY 63
|
|
| PLN03025 |
PLN03025 |
replication factor C subunit; Provisional |
72-124 |
7.44e-03 |
|
replication factor C subunit; Provisional
Pssm-ID: 178596 [Multi-domain] Cd Length: 319 Bit Score: 37.02 E-value: 7.44e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 16132182 72 ENYR----VECEGQMNALSKARQYVEefDGNIASFIFSGKPGTGKNHLAAAICNELL 124
Cdd:PLN03025 5 EKYRptklDDIVGNEDAVSRLQVIAR--DGNMPNLILSGPPGTGKTTSILALAHELL 59
|
|
| |
