|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10433 |
PRK10433 |
putative RNA methyltransferase; Provisional |
1-228 |
2.38e-165 |
|
putative RNA methyltransferase; Provisional
Pssm-ID: 236693 Cd Length: 228 Bit Score: 455.22 E-value: 2.38e-165
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132220 1 MRITIILVAPARAENIGAAARAMKTMGFSDLRIVDSQAHLEPATRWVAHGSGDIIDNIKVFPTLAESLHDVDFTVATTAR 80
Cdd:PRK10433 1 MRLTIILVAPARAENVGAAARAMKTMGFSELRIVDSQAHLEPAARWVAHGSGDILDNAKVFDTLAEALHDVDFTVATTAR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132220 81 SRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQ 160
Cdd:PRK10433 81 SRAKFHYYATPAELVPLLEEKSSWMSHAALVFGREDSGLTNEELALADVLTGVPMAADYPSLNLGQAVMVYCYQLAGLMQ 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16132220 161 QPAKSDATADQHQLQALRERAMTLLTTLAVADDIKLVDWLQQRLGLLEQRDTAMLHRLLHDIEKNITK 228
Cdd:PRK10433 161 QPAKSDTTADEGQLQALRQRAMRLLTTLGVADDEKLVDWLQQRLGLLEQRDTAMLHRLLHDIEKKLTK 228
|
|
| rRNA_methyl_1 |
TIGR00050 |
RNA methyltransferase, TrmH family, group 1; This is part of the trmH (spoU) family of ... |
1-226 |
1.33e-105 |
|
RNA methyltransferase, TrmH family, group 1; This is part of the trmH (spoU) family of S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases, and is now characterized, in E. coli, as a tRNA:Cm32/Um32 methyltransferase. It may be named TrMet(Xm32), or TrmJ, according to the nomenclature style chosen [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 272876 [Multi-domain] Cd Length: 233 Bit Score: 304.32 E-value: 1.33e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132220 1 MRITIILVAPARAENIGAAARAMKTMGFSDLRIVDSQAHLEPATRWVAHGSGDIIDNIKVFPTLAESLHDVDFTVATTAR 80
Cdd:TIGR00050 2 ENIRIVLVEPSHPGNIGSIARAMKNMGLTELRLVNPRVKLEEEAYALAAGARDILDNAKVVDTLDEALDDCDFVVGTSAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132220 81 SRAKYHYYATPVELVPLLEEKSswmSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQL--ATL 158
Cdd:TIGR00050 82 SRNLQRPMLTPRELAPKLVAEK---GKVALVFGREDSGLTNEELQKCHVLVSIPTSEEYPSLNLSHAVAVILYELrmAWL 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16132220 159 IQQPAKSD-ATADQHQLQALRERAMTLLTTLAVADD------IKLVDWLQQRLGlLEQRDTAMLHRLLHDIEKNI 226
Cdd:TIGR00050 159 AQQENLSEmPYATVDDLELLLEHLEETLLSLGFIPEhkprqvMRKFRRLYGRAG-LEKRELHILRGILRSIEKRI 232
|
|
| SpoU-like_TrmJ |
cd18093 |
SAM-dependent tRNA methylase related to TrmJ; tRNA methyltransferase TrmJ catalyzes the methyl ... |
3-155 |
1.42e-67 |
|
SAM-dependent tRNA methylase related to TrmJ; tRNA methyltransferase TrmJ catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 32 in both tRNASer1 and tRNAGln2. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349966 Cd Length: 153 Bit Score: 204.65 E-value: 1.42e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132220 3 ITIILVAPARAENIGAAARAMKTMGFSDLRIVDSQAH-LEPATRWVAHGSGDIIDNIKVFPTLAESLHDVDFTVATTARS 81
Cdd:cd18093 1 IRVVLVEPQHPGNIGAVARAMKNFGLSDLRLVNPRCDdPEEAARALASGAEDVLENAKVYDTLEEALADCDLVVATTARP 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16132220 82 RAKYHYYATPVELVPLLEEKSSwMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQL 155
Cdd:cd18093 81 RGLRRPLLTPRELAELLKEHAA-GGKVALVFGREDSGLTNEELALCDLLVTIPTNPEYPSLNLAQAVAIVLYEL 153
|
|
| TrmJ |
COG0565 |
tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase [Translation, ... |
1-226 |
1.68e-63 |
|
tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase [Translation, ribosomal structure and biogenesis]; tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440331 [Multi-domain] Cd Length: 237 Bit Score: 197.26 E-value: 1.68e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132220 1 MRITIILVAPARAENIGAAARAMKTMGFSDLRIVDSQAHLEPATRWVAHGSGDIIDNIKVFPTLAESLHDVDFTVATTAR 80
Cdd:COG0565 2 DNIRVVLVEPQHPGNIGAAARAMKNFGLSDLRLVNPRGWPDEEARAMASGADDVLENARVVDTLEEALADCDLVVGTTAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132220 81 SRAKYHYYATPVELVPLLEEKSSwmSH-AALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQL--AT 157
Cdd:COG0565 82 PRELRKPVLTPREAAEELLARAA--GGkVALVFGRERSGLTNEELALCDALVTIPTNPEYPSLNLAQAVQVVAYELrkAA 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16132220 158 LIQQPAKSDAT---ADQHQLQALRERAMTLLTTLAVADDIKLvDWLQQRL------GLLEQRDTAMLHRLLHDIEKNI 226
Cdd:COG0565 160 LEAPPLPPPPEpepATAEELEGLYEHLEELLDAIGFLDPEKP-EKLMRRLrrlfgrARLTEREVRTLRGILRALERRL 236
|
|
| SpoU_methylase |
pfam00588 |
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. |
3-153 |
5.92e-32 |
|
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet.
Pssm-ID: 425768 Cd Length: 142 Bit Score: 113.39 E-value: 5.92e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132220 3 ITIILVAPARAENIGAAARAMKTMGFSDLRIVD--SQAHLEPATRWVAHGSGDIIdNIKVFPTLAESLHDVDftvattar 80
Cdd:pfam00588 2 LVVVLDNIQDPGNLGAIIRTAAAFGADGLILVEprSADPYNPKAIRASAGALFHL-PLVVVDNLEEALKDLK-------- 72
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16132220 81 sRAKYHYYATPVELVPLLEekSSWMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCY 153
Cdd:pfam00588 73 -EAGYAVVATSLGGKSLYE--IDFPKKVALVFGNEGTGLSNEVLELCDRLVRIPMSGDVESLNVAVAAAIALY 142
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10433 |
PRK10433 |
putative RNA methyltransferase; Provisional |
1-228 |
2.38e-165 |
|
putative RNA methyltransferase; Provisional
Pssm-ID: 236693 Cd Length: 228 Bit Score: 455.22 E-value: 2.38e-165
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132220 1 MRITIILVAPARAENIGAAARAMKTMGFSDLRIVDSQAHLEPATRWVAHGSGDIIDNIKVFPTLAESLHDVDFTVATTAR 80
Cdd:PRK10433 1 MRLTIILVAPARAENVGAAARAMKTMGFSELRIVDSQAHLEPAARWVAHGSGDILDNAKVFDTLAEALHDVDFTVATTAR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132220 81 SRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQ 160
Cdd:PRK10433 81 SRAKFHYYATPAELVPLLEEKSSWMSHAALVFGREDSGLTNEELALADVLTGVPMAADYPSLNLGQAVMVYCYQLAGLMQ 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16132220 161 QPAKSDATADQHQLQALRERAMTLLTTLAVADDIKLVDWLQQRLGLLEQRDTAMLHRLLHDIEKNITK 228
Cdd:PRK10433 161 QPAKSDTTADEGQLQALRQRAMRLLTTLGVADDEKLVDWLQQRLGLLEQRDTAMLHRLLHDIEKKLTK 228
|
|
| rRNA_methyl_1 |
TIGR00050 |
RNA methyltransferase, TrmH family, group 1; This is part of the trmH (spoU) family of ... |
1-226 |
1.33e-105 |
|
RNA methyltransferase, TrmH family, group 1; This is part of the trmH (spoU) family of S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases, and is now characterized, in E. coli, as a tRNA:Cm32/Um32 methyltransferase. It may be named TrMet(Xm32), or TrmJ, according to the nomenclature style chosen [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 272876 [Multi-domain] Cd Length: 233 Bit Score: 304.32 E-value: 1.33e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132220 1 MRITIILVAPARAENIGAAARAMKTMGFSDLRIVDSQAHLEPATRWVAHGSGDIIDNIKVFPTLAESLHDVDFTVATTAR 80
Cdd:TIGR00050 2 ENIRIVLVEPSHPGNIGSIARAMKNMGLTELRLVNPRVKLEEEAYALAAGARDILDNAKVVDTLDEALDDCDFVVGTSAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132220 81 SRAKYHYYATPVELVPLLEEKSswmSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQL--ATL 158
Cdd:TIGR00050 82 SRNLQRPMLTPRELAPKLVAEK---GKVALVFGREDSGLTNEELQKCHVLVSIPTSEEYPSLNLSHAVAVILYELrmAWL 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16132220 159 IQQPAKSD-ATADQHQLQALRERAMTLLTTLAVADD------IKLVDWLQQRLGlLEQRDTAMLHRLLHDIEKNI 226
Cdd:TIGR00050 159 AQQENLSEmPYATVDDLELLLEHLEETLLSLGFIPEhkprqvMRKFRRLYGRAG-LEKRELHILRGILRSIEKRI 232
|
|
| SpoU-like_TrmJ |
cd18093 |
SAM-dependent tRNA methylase related to TrmJ; tRNA methyltransferase TrmJ catalyzes the methyl ... |
3-155 |
1.42e-67 |
|
SAM-dependent tRNA methylase related to TrmJ; tRNA methyltransferase TrmJ catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 32 in both tRNASer1 and tRNAGln2. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349966 Cd Length: 153 Bit Score: 204.65 E-value: 1.42e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132220 3 ITIILVAPARAENIGAAARAMKTMGFSDLRIVDSQAH-LEPATRWVAHGSGDIIDNIKVFPTLAESLHDVDFTVATTARS 81
Cdd:cd18093 1 IRVVLVEPQHPGNIGAVARAMKNFGLSDLRLVNPRCDdPEEAARALASGAEDVLENAKVYDTLEEALADCDLVVATTARP 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16132220 82 RAKYHYYATPVELVPLLEEKSSwMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQL 155
Cdd:cd18093 81 RGLRRPLLTPRELAELLKEHAA-GGKVALVFGREDSGLTNEELALCDLLVTIPTNPEYPSLNLAQAVAIVLYEL 153
|
|
| TrmJ |
COG0565 |
tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase [Translation, ... |
1-226 |
1.68e-63 |
|
tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase [Translation, ribosomal structure and biogenesis]; tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440331 [Multi-domain] Cd Length: 237 Bit Score: 197.26 E-value: 1.68e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132220 1 MRITIILVAPARAENIGAAARAMKTMGFSDLRIVDSQAHLEPATRWVAHGSGDIIDNIKVFPTLAESLHDVDFTVATTAR 80
Cdd:COG0565 2 DNIRVVLVEPQHPGNIGAAARAMKNFGLSDLRLVNPRGWPDEEARAMASGADDVLENARVVDTLEEALADCDLVVGTTAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132220 81 SRAKYHYYATPVELVPLLEEKSSwmSH-AALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQL--AT 157
Cdd:COG0565 82 PRELRKPVLTPREAAEELLARAA--GGkVALVFGRERSGLTNEELALCDALVTIPTNPEYPSLNLAQAVQVVAYELrkAA 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16132220 158 LIQQPAKSDAT---ADQHQLQALRERAMTLLTTLAVADDIKLvDWLQQRL------GLLEQRDTAMLHRLLHDIEKNI 226
Cdd:COG0565 160 LEAPPLPPPPEpepATAEELEGLYEHLEELLDAIGFLDPEKP-EKLMRRLrrlfgrARLTEREVRTLRGILRALERRL 236
|
|
| SpoU_methylase |
pfam00588 |
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. |
3-153 |
5.92e-32 |
|
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet.
Pssm-ID: 425768 Cd Length: 142 Bit Score: 113.39 E-value: 5.92e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132220 3 ITIILVAPARAENIGAAARAMKTMGFSDLRIVD--SQAHLEPATRWVAHGSGDIIdNIKVFPTLAESLHDVDftvattar 80
Cdd:pfam00588 2 LVVVLDNIQDPGNLGAIIRTAAAFGADGLILVEprSADPYNPKAIRASAGALFHL-PLVVVDNLEEALKDLK-------- 72
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16132220 81 sRAKYHYYATPVELVPLLEekSSWMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCY 153
Cdd:pfam00588 73 -EAGYAVVATSLGGKSLYE--IDFPKKVALVFGNEGTGLSNEVLELCDRLVRIPMSGDVESLNVAVAAAIALY 142
|
|
| PRK15114 |
PRK15114 |
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Provisional |
3-168 |
4.39e-23 |
|
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Provisional
Pssm-ID: 185069 Cd Length: 245 Bit Score: 93.28 E-value: 4.39e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132220 3 ITIILVAPARAENIGAAARAMKTMGFSDLRIV------DSQAHLepatrwVAHGSGDIIDNIKVFPTLAESLHDVDFTVA 76
Cdd:PRK15114 5 IRIVLVETSHTGNMGSVARAMKTMGLTNLWLVnplvkpDSQAIA------LAAGASDVIGNATIVDTLDEALAGCSLVVG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132220 77 TTARSRAkyhyyaTPVelvPLLE-----EKS-SWMSHA--ALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAV 148
Cdd:PRK15114 79 TSARSRT------LPW---PMLDprecgLKSvAEAANApvALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAV 149
|
170 180
....*....|....*....|..
gi 16132220 149 MVYCYQ--LATLIQQPAKSDAT 168
Cdd:PRK15114 150 QVIAYEvrMAWLATQENGEPQV 171
|
|
| SpoU-like_family |
cd18082 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
4-155 |
1.81e-15 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349955 Cd Length: 145 Bit Score: 70.72 E-value: 1.81e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132220 4 TIILVAPARAENIGAAARAMKTMGFSDLRIVDSQAH-LEPATRWVAHGSGDIIdNIKVFPTLAESLHDVDftvattarsR 82
Cdd:cd18082 1 HLVLDNIRSPGNIGSIFRTADAFGVEKIYLVGPTADiFDPKAKRTSRGTHFSV-PYERVDNFEEYLKSLK---------E 70
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16132220 83 AKYHYYATpvEL----VPLLEEKSSWMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQL 155
Cdd:cd18082 71 EGYPLIGL--ELtdgsIPLSEFKFKKPKKIALIFGNERSGLSPELLALCDYTVHIPMSGKNSSLNVSVATGIALYEF 145
|
|
| SpoU-like |
cd18097 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
109-155 |
3.39e-04 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349970 Cd Length: 144 Bit Score: 39.47 E-value: 3.39e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 16132220 109 ALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQL 155
Cdd:cd18097 98 ALVLGNEVRGVSPEVLALCDAVVEIPMFGRKNSLNVAVAAAVALYEL 144
|
|
| SpoU-like_rRNA-MTase |
cd18095 |
SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ... |
61-155 |
3.40e-04 |
|
SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349968 Cd Length: 143 Bit Score: 39.72 E-value: 3.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132220 61 FPTLAESLHDVDFTVATTARSRAKYHYyatpvelvplleeKSSWMSHAALVFGREDSGLTNEELALADVLTGVPMVADYP 140
Cdd:cd18095 62 LEELLEELKEAGYKVVAADLDGGSSLY-------------DLDLPKPVALVLGNEGNGLSDELLELCDKRVTIPMSGGVE 128
|
90
....*....|....*
gi 16132220 141 SLNLGQAVMVYCYQL 155
Cdd:cd18095 129 SLNVAVAAAILLYEL 143
|
|
| SpoU-like_TrmH |
cd18092 |
SAM-dependent tRNA methylase related to TrmH; TrmH catalyzes the transfer of the methyl group ... |
2-144 |
3.50e-04 |
|
SAM-dependent tRNA methylase related to TrmH; TrmH catalyzes the transfer of the methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the ribose of the universally conserved guanosine 18 (G18) position in tRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349965 Cd Length: 162 Bit Score: 39.76 E-value: 3.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16132220 2 RITIILVAPARAENIGAAARAMKTMGFSDLRIVDSQAHLEP-------ATRWVahgsgdiidNIKVFPTLAESLHDV--- 71
Cdd:cd18092 16 DLTVVLENVHDPHNASAVLRTCDAFGVQDVHVIEPKNKFKKnrgvamgADKWL---------DVHRHDSTEECLAALkeq 86
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16132220 72 DFT-VATTARSRAKYHY---YATPVelvplleeksswmshaALVFGREDSGLTNEELALADVLTGVPMVADYPSLNL 144
Cdd:cd18092 87 GYRiVATSLSPDAVPLDeldYTRPT----------------ALVFGNEKDGVSEEALAAADERVYIPMYGFVESLNV 147
|
|
| SpoU-like_RNA-MTase |
cd18104 |
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ... |
106-153 |
7.87e-04 |
|
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349977 Cd Length: 146 Bit Score: 38.72 E-value: 7.87e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 16132220 106 SHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCY 153
Cdd:cd18104 93 GPIAIVVGSESEGLSEFWLKAADERVRIPMAGQADSLNVSVAAAILLY 140
|
|
| SpoU |
COG0566 |
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA ... |
109-156 |
2.92e-03 |
|
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA G18 (ribose-2'-O)-methylase SpoU is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440332 [Multi-domain] Cd Length: 265 Bit Score: 37.87 E-value: 2.92e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 16132220 109 ALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156
Cdd:COG0566 212 ALVLGNEGKGLSRLVLEACDELVRIPMAGGVESLNVAVAAAILLYEAA 259
|
|
| SpoU-like_TrmL |
cd18094 |
SAM-dependent tRNA methylase related to TrmL; tRNA (Um34/Cm34) methyltransferase TrmL ... |
110-148 |
5.56e-03 |
|
SAM-dependent tRNA methylase related to TrmL; tRNA (Um34/Cm34) methyltransferase TrmL catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 34 in both tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349967 Cd Length: 145 Bit Score: 35.89 E-value: 5.56e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 16132220 110 LVFGREDSGLTNEEL-ALADVLTGVPMVADYPSLNLGQAV 148
Cdd:cd18094 95 LVFGRESTGLPEEILdAFPDRRLRIPMRPKVRSLNLSNSV 134
|
|
| |
