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Conserved domains on  [gi|16357446|ref|NP_443308|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Trachipterus trachypterus]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475913)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-346 0e+00

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 535.15  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446    1 MSPMILTLFLLSLGLGTTITFASSHWLLAWMGLEINTLAILPLMAQHPHPRAVEATTKYFLTQATAAAMILFASATNAWY 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   81 TGEWCITDMSSPLSMTMVIMALALKLGLAPVHFWLPEVLQGLNLTTGLVLSTWQKLAPFILLIQIPLPNHTLMTLLALLS 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNPTLLITLGLTS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  161 VLVGGWGGLNQVQTRKILAYSSIAHLGWMLLISQFSTPLALLALFTYILMTTPAFLILKFTHATTINSLASSWTKSVVLT 240
Cdd:MTH00135 161 TLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALT 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  241 ALTPLVLFSLGGLPPLSGFAPKWLILQELTKQGLPIVATLAAMMALLSLYFYLRLSYSLALTMAPNTPPASAPWRSIPQQ 320
Cdd:MTH00135 241 ALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQ 320

                        330       340
                 ....*....|....*....|....*.
gi 16357446  321 SSSLLAITTMMSILMLPIMPSTLSLF 346
Cdd:MTH00135 321 LTLPLAISTTATLMLLPLTPAILALL 346
 
Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-346 0e+00

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 535.15  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446    1 MSPMILTLFLLSLGLGTTITFASSHWLLAWMGLEINTLAILPLMAQHPHPRAVEATTKYFLTQATAAAMILFASATNAWY 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   81 TGEWCITDMSSPLSMTMVIMALALKLGLAPVHFWLPEVLQGLNLTTGLVLSTWQKLAPFILLIQIPLPNHTLMTLLALLS 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNPTLLITLGLTS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  161 VLVGGWGGLNQVQTRKILAYSSIAHLGWMLLISQFSTPLALLALFTYILMTTPAFLILKFTHATTINSLASSWTKSVVLT 240
Cdd:MTH00135 161 TLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALT 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  241 ALTPLVLFSLGGLPPLSGFAPKWLILQELTKQGLPIVATLAAMMALLSLYFYLRLSYSLALTMAPNTPPASAPWRSIPQQ 320
Cdd:MTH00135 241 ALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQ 320

                        330       340
                 ....*....|....*....|....*.
gi 16357446  321 SSSLLAITTMMSILMLPIMPSTLSLF 346
Cdd:MTH00135 321 LTLPLAISTTATLMLLPLTPAILALL 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 22-343 2.45e-37

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 139.48  E-value: 2.45e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  22 ASSHWLLAWMGLEINTLAILPLMA-QHPHPRAVEATTKYFLTQATAAAMILFASATNAWYTGEWCITDMSSPLS------ 94
Cdd:COG1007 120 SANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAGIAAALAaggans 199

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  95 ------MTMVIMALALKLGLAPVHFWLPEVLQGLNLTTGLVLSTWQKLAPFILLIQI---PLPN-----HTLMTLLALLS 160
Cdd:COG1007 200 pllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLlveAFPGlaadwQLLLAVLAVLS 279

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446 161 VLVGGWGGLNQVQTRKILAYSSIAHLGWMLL----ISQFSTPLALLALFTYILMTTPAFLIL-----KFTHATTINSLAS 231
Cdd:COG1007 280 MTVGNLAALAQTNVKRMLAYSSIAHAGYLLLglaaGTPLGVSAALFYLLAYLFMNLGAFAVIlllsrKGGEAEEIEDLAG 359

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446 232 SWTKSVVLTALTPLVLFSLGGLPPLSGFAPKWLILQELTKQGLPIVATLAAMMALLSLYFYLRLSYSLALTMAPNTPPAS 311
Cdd:COG1007 360 LARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKAMYFDEPEEEAPIS 439

                       330       340       350
                ....*....|....*....|....*....|..
gi 16357446 312 APWrsipqqSSSLLAITTMMSILMLPIMPSTL 343
Cdd:COG1007 440 APP------GLRVALVIAALLVLLLGIFPGPL 465
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 23-343 1.49e-28

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 115.05  E-value: 1.49e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446    23 SSHWLLAWMGLEINTLAILPLMA-QHPHPRAVEATTKYFLTQATAAAMILFASATNAWYTGEWCITDMSSPLSMTM---- 97
Cdd:TIGR01770 121 SNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSNGMlnis 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446    98 --------VIMALALKLGLAPVHFWLPEVLQGLNLTTGLVLSTWQKLAPFILLIQI--------PLPNHTLMTLLALLSV 161
Cdd:TIGR01770 201 llllgivlILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLflyilfgfSEAWQIFLAIIAFLSM 280

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   162 LVGGWGGLNQVQTRKILAYSSIAHLGWMLL----ISQFSTPLALLALFTYILMTTPAFLIL------KFTHATTINSLAS 231
Cdd:TIGR01770 281 LIGNFGALAQKKVKRLLAYSSISHVGYILIgllaGTLEGIKAVLFYIFIYALMSLGAFGVLsllrsyKDEWIEYISDFAG 360

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   232 SWTKSVVLTALTPLVLFSLGGLPPLSGFAPKWLILQELTKQGLPIVATLAAMMALLSLYFYLRlsysLALTMAPNTPPAS 311
Cdd:TIGR01770 361 LFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLR----VVKVMYFDKPERR 436

                         330       340       350
                  ....*....|....*....|....*....|..
gi 16357446   312 APWRSIPQQSSSLLAITTMMSILMLpIMPSTL 343
Cdd:TIGR01770 437 IPSNPQSKAQSLLLSISALFILFLG-LFPSLI 467
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-280 1.21e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 101.62  E-value: 1.21e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446    23 SSHWLLAWMGLEINTLAILPLMA-QHPHPRAVEATTKYFLTQATAAAMILFASATNAWYTGEWCITDMSSPLSMT----- 96
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446    97 ------MVIMALALKLGLAPVHFWLPEVLQGLNLT-TGLVLSTWQKLAPFILLIQIPLPN------HTLMTLLALLSVLV 163
Cdd:pfam00361  81 llllflLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGYGLIRRSLLYLpsspfiQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   164 GGWGGLNQVQTRKILAYSSIAHLGWMLLIS----QFSTPLALLALFTYILMTTPAFL-----ILKFTHATTINSLASSWT 234
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 16357446   235 KSVVLTALTPLVLFSLGGLPPLSGFAPKWLILQELTKQGLPIVATL 280
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLA 286
 
Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-346 0e+00

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 535.15  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446    1 MSPMILTLFLLSLGLGTTITFASSHWLLAWMGLEINTLAILPLMAQHPHPRAVEATTKYFLTQATAAAMILFASATNAWY 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   81 TGEWCITDMSSPLSMTMVIMALALKLGLAPVHFWLPEVLQGLNLTTGLVLSTWQKLAPFILLIQIPLPNHTLMTLLALLS 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNPTLLITLGLTS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  161 VLVGGWGGLNQVQTRKILAYSSIAHLGWMLLISQFSTPLALLALFTYILMTTPAFLILKFTHATTINSLASSWTKSVVLT 240
Cdd:MTH00135 161 TLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALT 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  241 ALTPLVLFSLGGLPPLSGFAPKWLILQELTKQGLPIVATLAAMMALLSLYFYLRLSYSLALTMAPNTPPASAPWRSIPQQ 320
Cdd:MTH00135 241 ALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQ 320

                        330       340
                 ....*....|....*....|....*.
gi 16357446  321 SSSLLAITTMMSILMLPIMPSTLSLF 346
Cdd:MTH00135 321 LTLPLAISTTATLMLLPLTPAILALL 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-346 7.08e-141

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 402.76  E-value: 7.08e-141
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446    1 MSPMILTLFLLSLGLGTTITFASSHWLLAWMGLEINTLAILPLMAQHPHPRAVEATTKYFLTQATAAAMILFASATNAWY 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   81 TGEWCITDMSSPLSMTMVIMALALKLGLAPVHFWLPEVLQGLNLTTGLVLSTWQKLAPFILLIQI-PLPNHTLMTLLALL 159
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQIsHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  160 SVLVGGWGGLNQVQTRKILAYSSIAHLGWMLLISQFSTPLALLALFTYILMTTPAFLILKFTHATTINSLASSWTKSVVL 239
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  240 TALTPLVLFSLGGLPPLSGFAPKWLILQELTKQGLPIVATLAAMMALLSLYFYLRLSYSLALTMAPNTPPASAPWRSiPQ 319
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRF-KN 319

                        330       340
                 ....*....|....*....|....*..
gi 16357446  320 QSSSLLAITTMMSILMLPIMPSTLSLF 346
Cdd:MTH00070 320 KTNNLLSLTIILSLMLLPITPTILNLF 346
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 2.92e-130

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 376.09  E-value: 2.92e-130
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446    1 MSPMILTLFLLSLGLGTTITFASSHWLLAWMGLEINTLAILPLMAQHPHPRAVEATTKYFLTQATAAAMILFASATNAWY 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   81 TGEWCITDMSSPLSMTMVIMALALKLGLAPVHFWLPEVLQGLNLTTGLVLSTWQKLAPFILLIQI-PLPNHTLMTLLALL 159
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTsNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  160 SVLVGGWGGLNQVQTRKILAYSSIAHLGWMLLISQFSTPLALLALFTYILMTTPAFLILKFTHATTINSLASSWTKSVVL 239
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  240 TALTPLVLFSLGGLPPLSGFAPKWLILQELTKQGLPIVATLAAMMALLSLYFYLRLSYSLALTMAPNTPPASAPWRSIPQ 319
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*..
gi 16357446  320 QsSSLLAITTMMSILMLPIMPSTLSLF 346
Cdd:MTH00112 321 K-NTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-346 1.04e-123

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 359.16  E-value: 1.04e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446    1 MSPMILTLFLLSLGLGTTITFASSHWLLAWMGLEINTLAILPLMAQHPHPRAVEATTKYFLTQATAAAMILFASATNAWY 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   81 TGEWCITDMSSPLSMTMVIMALALKLGLAPVHFWLPEVLQGLNLTTGLVLSTWQKLAPFILLIQI-PLPNHTLMTLLALL 159
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQIsPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  160 SVLVGGWGGLNQVQTRKILAYSSIAHLGWMLLISQFSTPLALLALFTYILMTTPAFLILKFTHATTINSLASSWTKSVVL 239
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  240 TALTPLVLFSLGGLPPLSGFAPKWLILQELTKQGLPIVATLAAMMALLSLYFYLRLSYSLALTMAPNTPPASAPWRSIPQ 319
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                        330       340
                 ....*....|....*....|....*..
gi 16357446  320 QSSSLLAITTMMSILMLPIMPSTLSLF 346
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 4.75e-108

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 319.61  E-value: 4.75e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446    1 MSPMILTLFLLSLGLGTTITFASSHWLLAWMGLEINTLAILPLMAQHPHPRAVEATTKYFLTQATAAAMILFASATNAWY 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   81 TGEWCITDMSSPLSMTMVIMALALKLGLAPVHFWLPEVLQGLNLTTGLVLSTWQKLAPFILLIQI-PLPNHTLMTLLALL 159
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLaPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  160 SVLVGGWGGLNQVQTRKILAYSSIAHLGWMLLISQFSTPLALLALFTYILMTTPAFLILKFTHATTINSLASSWTKSVVL 239
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  240 TALTPLVLFSLGGLPPLSGFAPKWLILQELTKQGLPIVATLAAMMALLSLYFYLRLSYSLALTMAPNTPPASAPWRSiPQ 319
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRT-KS 319

                        330       340
                 ....*....|....*....|....*..
gi 16357446  320 QSSSLLAITTMMSILMLPIMPSTLSLF 346
Cdd:MTH00200 320 NSNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 18-346 9.86e-92

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 277.97  E-value: 9.86e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   18 TITFASSHWLLAWMGLEINTLAILPLMAQHPHPRAVEATTKYFLTQATAAAMILFASATNAWYTGEWCITDMSSPLSMTM 97
Cdd:MTH00041  18 IIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLNTLSSII 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   98 VIMALALKLGLAPVHFWLPEVLQGLNLTTGLVLSTWQKLAPFILLIQI-PLPNHTLMTLLALLSVLVGGWGGLNQVQTRK 176
Cdd:MTH00041  98 ITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISIsNLLNSNILILCGILSVLVGGWGGLNQTQTRK 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  177 ILAYSSIAHLGWMLLISQFSTPLALLALFTYILMTTPAFLILKFTHATTINSLASSWTKSVVLTALTPLVLFSLGGLPPL 256
Cdd:MTH00041 178 ILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSLGGLPPL 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  257 SGFAPKWLILQELTKQGLPIVATLAAMMALLSLYFYLRLSYSLALTMAPNTPPASAPWRSIPQQSSSLLAITTMMSILML 336
Cdd:MTH00041 258 TGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYGVILSILSSISIL 337

                        330
                 ....*....|..
gi 16357446  337 PI--MPSTLSLF 346
Cdd:MTH00041 338 GLllIPLFLSFL 349
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 19-347 7.04e-60

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 195.81  E-value: 7.04e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   19 ITFASSHWLLAWMGLEINTLAILPLMAQHPHPRAVEATTKYFLTQATAAAMILFASATNAWytgewcITDMSSPLSMTMV 98
Cdd:MTH00160  20 ISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML------NLMLFNNISSMLI 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   99 IMALALKLGLAPVHFWLPEVLQGLNLTTGLVLSTWQKLAPFILLIQIPlpNHTLMTLLALLSVLVGGWGGLNQVQTRKIL 178
Cdd:MTH00160  94 NSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLI--NNNFIIIIIILSAIIGAIGGLNQTSLRKIL 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  179 AYSSIAHLGWMLLISQFSTPLALLALFTYILMTTPAFLILKFTHATTINSLASSWTKSVVLTALTPLVLFSLGGLPPLSG 258
Cdd:MTH00160 172 AYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLSLGGLPPFLG 251

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  259 FAPKWLILQELTKQGLPIVATLAAMMALLSLYFYLRLSYSLALTMAPNTppasaPWRSIPQQSSSLLAITTMMSILMLPI 338
Cdd:MTH00160 252 FLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKN-----KWNLKKKKNKFSLILNFLSFISLFGL 326


                 ....*....
gi 16357446  339 MPSTLSLFY 347
Cdd:MTH00160 327 ILSSLLFLL 335
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 23-303 6.52e-52

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 174.69  E-value: 6.52e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   23 SSHWLLAWMGLEINTLAILPLMAQHPHPRAVEATTKYFLTQATAAAMILFASATNAWYTGEWcitdmsspLSMTMVIMAL 102
Cdd:MTH00144  23 SSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW--------FSMSLLLLGL 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  103 ALKLGLAPVHFWLPEVLQGLNLTTGLVLSTWQKLAPFILLIQIPLPNHTLMTL--LALLSVLVGGWGGLNQVQTRKILAY 180
Cdd:MTH00144  95 CLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLcvISVLSALVGSIGGLNQTQVRALLAY 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  181 SSIAHLGWMLLISQFSTPLALLALFTYILMTTPAFLILKFTHATTINSLaSSWTKSVVLTALTPLVLFSLGGLPPLSGFA 260
Cdd:MTH00144 175 SSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDL-GSLKPSYKTGLSIISLLLSLGGLPPFLGFC 253

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 16357446  261 PKWLILQELTKQGLPIVATLAAMMALLSLYFYLRLSYSLALTM 303
Cdd:MTH00144 254 SKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSS 296
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 19-298 1.50e-45

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 158.40  E-value: 1.50e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   19 ITFASSHWLLAWMGLEINTLAILPLMAQHPHPRAVEATTKYFLTQATAAAMILFASatnawyTGEWCITDMSSPLSMTMV 98
Cdd:MTH00011  21 MALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSFPSLLKNITALML 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   99 IMALALKLGLAPVHFWLPEVLQGLNLTTGLVLSTWQKLAPFILLIQI-PLPNHTLMTLLALLSVLVGGWGGLNQVQTRKI 177
Cdd:MTH00011  95 LVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFtSHNILPMMTSMAAMSALAGGLGGMNQTQLRPL 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  178 LAYSSIAHLGWMLLISQFSTPLALLALFTYILMTTPAFLILKFTHATTINSLASSWTKSVVLTALTPLVLFSLGGLPPLS 257
Cdd:MTH00011 175 LAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLGGLPPFT 254

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 16357446  258 GFAPKWLILQELTKQGLPIVATLAAMMALLSLYFYLRLSYS 298
Cdd:MTH00011 255 GFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFN 295
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 18-339 3.55e-43

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 151.75  E-value: 3.55e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   18 TITFASSHWLLAWMGLEINTLAILPLMAQHPHPRAVEATTKYFLTQATAAAMILFAsatnawytGEWCITDM-SSPLSMT 96
Cdd:MTH00197  12 LFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMG--------GSLSFSNLyLSLLSVV 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   97 MVIMALALKLGLAPVHFWLPEVLQGLNLTTGLVLSTWQKLAPFILLIQIplpNHTLMTLL--ALLSVLVGGWGGLNQVQT 174
Cdd:MTH00197  84 LVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFN---SSSFMGLLicSVLSSLIGGIGGMNQSNI 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  175 RKILAYSSIAHLGWMLLISQFSTPLALLALFTYILMTTPAFLILKFTHATTINSLASSWTKSVVLTALTPLVLFSLGGLP 254
Cdd:MTH00197 161 RQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLGGLP 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  255 PLSGFAPKWLILQELTKQGLPIVATLAAMMALLSLYFYLRLSYSlalTMAPNTPPASAPWRSIPQQSSSLLAITTMMSIL 334
Cdd:MTH00197 241 PLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYK---SLILSNWMINFLMKINLLYSGLFILLMMMLPLL 317


                 ....*
gi 16357446  335 MLPIM 339
Cdd:MTH00197 318 MIFTM 322
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 22-343 2.45e-37

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 139.48  E-value: 2.45e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  22 ASSHWLLAWMGLEINTLAILPLMA-QHPHPRAVEATTKYFLTQATAAAMILFASATNAWYTGEWCITDMSSPLS------ 94
Cdd:COG1007 120 SANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAGIAAALAaggans 199

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  95 ------MTMVIMALALKLGLAPVHFWLPEVLQGLNLTTGLVLSTWQKLAPFILLIQI---PLPN-----HTLMTLLALLS 160
Cdd:COG1007 200 pllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLlveAFPGlaadwQLLLAVLAVLS 279

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446 161 VLVGGWGGLNQVQTRKILAYSSIAHLGWMLL----ISQFSTPLALLALFTYILMTTPAFLIL-----KFTHATTINSLAS 231
Cdd:COG1007 280 MTVGNLAALAQTNVKRMLAYSSIAHAGYLLLglaaGTPLGVSAALFYLLAYLFMNLGAFAVIlllsrKGGEAEEIEDLAG 359

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446 232 SWTKSVVLTALTPLVLFSLGGLPPLSGFAPKWLILQELTKQGLPIVATLAAMMALLSLYFYLRLSYSLALTMAPNTPPAS 311
Cdd:COG1007 360 LARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKAMYFDEPEEEAPIS 439

                       330       340       350
                ....*....|....*....|....*....|..
gi 16357446 312 APWrsipqqSSSLLAITTMMSILMLPIMPSTL 343
Cdd:COG1007 440 APP------GLRVALVIAALLVLLLGIFPGPL 465
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 23-295 3.74e-29

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 115.13  E-value: 3.74e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   23 SSHWLLAWMGLEINTLAILPLMAQHPHP-RAVEATTKYFLTQATAAAMILFASATNAWYTGEWCI-------------TD 88
Cdd:MTH00196  12 SSNWLSVYLAIELQTLSLFILIAQNRGSgYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLsyinlvlnsgqsfSS 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   89 MSSPLSMTMVIMALALKLGLAPVHFWLPEVLQGLNLTTGLVLSTWQKLAPFILLIQIPLPNHTLMtLLALLSVLVGGWGG 168
Cdd:MTH00196  92 VSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILL-IGGLFSLFVGAIGA 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  169 LNQVQTRKILAYSSIAHLG---WMLLISQF-STPLALLALFTYILMTTPAFLILKF--THATTINSLASSWTKSVVLTAL 242
Cdd:MTH00196 171 LNQTKIKRLLAYSGIGHMGfvlWGIEIGSFeSIQASLVYLFIYIIMSICVFSIILAlnVYKNLIIEFSGLSRRLPILAIT 250

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 16357446  243 TPLVLFSLGGLPPLSGFAPKWLILQELTKQGLPIVATLAAMMALLSLYFYLRL 295
Cdd:MTH00196 251 LALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
22-343 8.23e-29

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 116.07  E-value: 8.23e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   22 ASSHWLLAWMGLEINTLAILPLMAQH-PHPRAVEATTKYFLTQATAAAMILFASATNAWYTGEWCITDMSSPLSMT---- 96
Cdd:PRK05777 121 SANDLLTLFLGLELLSLPLYALAALRrDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKALADGsgns 200

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   97 --------MVIMALALKLGLAPVHFWLPEVLQGLNLTTGLVLSTWQKLAPFILLIQI--------PLPNHTLMTLLALLS 160
Cdd:PRK05777 201 llllfglvFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLlvvafgglSEDWQQVLAIIAIAS 280

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  161 VLVGGWGGLNQVQTRKILAYSSIAHLGWMLL----ISQFSTPLALLALFTYILMTTPAFLIL-----KFTHATTINSLAS 231
Cdd:PRK05777 281 MLVGNLAALSQTNIKRLLAYSSIAHAGYLLVglaaGTAEGYSAVLFYLLAYLFMTLGAFGVIsllrrKGGEAESISDFAG 360

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  232 SWTKSVVLTALTPLVLFSLGGLPPLSGFAPKWLILQELTKQGLPIVATLAAMMALLSLYFYLRLSYSLALTMAPNTPPAS 311
Cdd:PRK05777 361 LSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRVIKLMYFDEPPRDAPVN 440

                        330       340       350
                 ....*....|....*....|....*....|..
gi 16357446  312 APwrsiPQQSSSLLAITTMMSILmLPIMPSTL 343
Cdd:PRK05777 441 WP----LSAGGAVLSVSALLVLV-LGIFPQPL 467
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 23-343 1.49e-28

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 115.05  E-value: 1.49e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446    23 SSHWLLAWMGLEINTLAILPLMA-QHPHPRAVEATTKYFLTQATAAAMILFASATNAWYTGEWCITDMSSPLSMTM---- 97
Cdd:TIGR01770 121 SNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSNGMlnis 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446    98 --------VIMALALKLGLAPVHFWLPEVLQGLNLTTGLVLSTWQKLAPFILLIQI--------PLPNHTLMTLLALLSV 161
Cdd:TIGR01770 201 llllgivlILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLflyilfgfSEAWQIFLAIIAFLSM 280

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   162 LVGGWGGLNQVQTRKILAYSSIAHLGWMLL----ISQFSTPLALLALFTYILMTTPAFLIL------KFTHATTINSLAS 231
Cdd:TIGR01770 281 LIGNFGALAQKKVKRLLAYSSISHVGYILIgllaGTLEGIKAVLFYIFIYALMSLGAFGVLsllrsyKDEWIEYISDFAG 360

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   232 SWTKSVVLTALTPLVLFSLGGLPPLSGFAPKWLILQELTKQGLPIVATLAAMMALLSLYFYLRlsysLALTMAPNTPPAS 311
Cdd:TIGR01770 361 LFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLR----VVKVMYFDKPERR 436

                         330       340       350
                  ....*....|....*....|....*....|..
gi 16357446   312 APWRSIPQQSSSLLAITTMMSILMLpIMPSTL 343
Cdd:TIGR01770 437 IPSNPQSKAQSLLLSISALFILFLG-LFPSLI 467
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 23-295 7.93e-28

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 113.19  E-value: 7.93e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   23 SSHWLLAWMGLEINTLAILPLMA-QHPHPRAVEATTKYFLTQATAAAMILFASATNAWYTGEWCITDMSSPLSM----TM 97
Cdd:MTH00199 116 SINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGINSILTGdvgkIL 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   98 VIMALALKLGLAPVHFWLPEVLQGLNLTTGLVLSTWQKLAPFILLIQIPlPNHTLMTLLALLSVLVGGWGGLNQVQTRKI 177
Cdd:MTH00199 196 ITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIG-PVTNVVLICAVLSIIYGAIGALNQTKIKRL 274

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  178 LAYSSIAHLGWMLL---ISQFSTPLA-LLALFTYILMTTPAFLI---LKFTHATTINSLASSWTKSVVLTALTpLVLFSL 250
Cdd:MTH00199 275 LAYSGIGHMGFILFgvaIGSFESIQAsLIYMIIYVIMSICSFSIilsLKLTKGLIVEVSGLSRKNPVIALTLA-LTFLSI 353

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 16357446  251 GGLPPLSGFAPKWLILQELTKQGLPIVATLAAMMALLSLYFYLRL 295
Cdd:MTH00199 354 AGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-280 1.21e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 101.62  E-value: 1.21e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446    23 SSHWLLAWMGLEINTLAILPLMA-QHPHPRAVEATTKYFLTQATAAAMILFASATNAWYTGEWCITDMSSPLSMT----- 96
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446    97 ------MVIMALALKLGLAPVHFWLPEVLQGLNLT-TGLVLSTWQKLAPFILLIQIPLPN------HTLMTLLALLSVLV 163
Cdd:pfam00361  81 llllflLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGYGLIRRSLLYLpsspfiQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   164 GGWGGLNQVQTRKILAYSSIAHLGWMLLIS----QFSTPLALLALFTYILMTTPAFL-----ILKFTHATTINSLASSWT 234
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 16357446   235 KSVVLTALTPLVLFSLGGLPPLSGFAPKWLILQELTKQGLPIVATL 280
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLA 286
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 30-295 5.48e-24

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 101.76  E-value: 5.48e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  30 WMGLEINTLAILPLMAQHPHPRAVEATTKYFLTQATAAAMILFASATNAWYTGEWCITDMSSPLS----------MTMVI 99
Cdd:COG0651 133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAARLAeldpglllaaFALLL 212

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446 100 MALALKLGLAPVHFWLPE-----------VLQGLNLTTGL--VLSTWQKLAPFILLIQIplpnHTLMTLLALLSVLVGGW 166
Cdd:COG0651 213 VGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFGADPALFL----GTLLLVLGLLTMLVGAL 288

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446 167 GGLNQVQTRKILAYSSIAHLGWMLLISQFSTPLALLA----LFTYILMTTPAFL----ILKFTHATTINSLASSWTKSVV 238
Cdd:COG0651 289 GALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGalfhLLNHALAKALLFLaagaIERATGTRDLDKLGGLGKRMPL 368

                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 16357446 239 LTALTPLVLFSLGGLPPLSGFAPKWLILQELTKQGLPIVATLAAMMALLSLYFYLRL 295
Cdd:COG0651 369 TAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 23-295 4.95e-18

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 85.30  E-value: 4.95e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   23 SSHWLLAWMGLEINTLAILPLMAQHPHPRAV---------EATTKYFLTQATAAAMILFASATNAWYTGEWCI--TDMSS 91
Cdd:MTH00198 207 SANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNEGMlgTILSA 286

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   92 PLSMT------------MVIMALALKLGLAPVHFWLPEVLQGLNLTTGLVLSTWQKLAPFILLIQIPLPNHTLMTLlALL 159
Cdd:MTH00198 287 TLETTnielrqgslgylFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVITSKLLLSV-AII 365

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  160 SVLVGGWGGLNQVQTRKILAYSSIAHLGWMLLISQFSTPLALLALFTYILMttpaFLILKFTHATTINSLASSWTKS--- 236
Cdd:MTH00198 366 SLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAVT----YLVSALASFTVICTLEEFGTRTpts 441

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  237 ----------------VVLTALT----------PLVLFSLGGLPPLSGFAPKWLILQELTK----QGLPI---VATLAAM 283
Cdd:MTH00198 442 rqrdgsfgnynlvrrlVDLTILSrgqpyiafslAIVFLSLAGIPPLLGFLGKWFILVGSIKiafsSSLSIyylVALFAII 521

                        330
                 ....*....|..
gi 16357446  284 MALLSLYFYLRL 295
Cdd:MTH00198 522 CTCISAFYYIRI 533
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-295 4.27e-15

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 76.20  E-value: 4.27e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   51 RAVEATTKYFLTQATAAAMILFA---------SATNAWYTGEWCI-TDMSSP----LSMTMVIMALALKLGLAPVHFWLP 116
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVYGfswlyglsgGEIELQEIVNGLInTQMYNSpgisIALIFITVGIGFKLSLAPFHQWTP 238

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  117 EVLQGLNLTTGLVLSTWQKLAPFILLIQI------PLPN--HTLMTLLALLSVLVGGWGGLNQVQTRKILAYSSIAHLGW 188
Cdd:CHL00049 239 DVYEGSPTPVVAFLSVTSKVAASALATRIfdipfyFSSNewHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGY 318

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  189 M---LLISQFSTPLA--LLALFTYILMTTPAF-LILKF---THATTINSLASSWTKSVVLTALTPLVLFSLGGLPPLSGF 259
Cdd:CHL00049 319 ViigIIVGDSNDGYAsmITYMLFYIFMNLGTFaCIVLFglrTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGIPPLAGF 398

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 16357446  260 APKWLILQELTKQGLPIVATLAAMMALLSLYFYLRL 295
Cdd:CHL00049 399 FGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKI 434
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 21-281 9.56e-15

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 75.03  E-value: 9.56e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   21 FASSHWLLAWMGLEINTLAILpLMAQHPHPRAVEATTKYFLTQATAAAMILFASATNAWYTGEWCITDMSSPLSM-TMVI 99
Cdd:PRK08668 115 FLANDLLTLYIFWEIMTFSSF-MMVPMGKKESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFADISQGLINdTSTG 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  100 MALAL----------KLGLAPVHFWLPE-----------VLQGLNLTTGL--------VLSTWQKLAPFILLIQIPLPNH 150
Cdd:PRK08668 194 FALIVflfllafgvaKAGIFPLHVWAPDayseapqsfsaVLSGQLSKLGAygfllvlyVLPGTKLFSEFGTYRGVPLFNY 273

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  151 TLMTLLALlSVLVGGWGGLNQVQTRKILAYSSIAHLGWMLLISQFSTPLALL---------ALFTYILMTTPAFLILKfT 221
Cdd:PRK08668 274 ILAWLGNI-SIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAgglfhvfnhALFKGLFFLIFAAVIYR-T 351

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  222 HATTINSLASSWTKSVVLTALTPLVLFSLGGLPPLSGFAPKWLILQELTKQGLPIVATLA 281
Cdd:PRK08668 352 GTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMA 411
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-294 4.68e-14

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 72.78  E-value: 4.68e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   50 PRAVEATTKYFLTQATAAAMILFASA---------TNAWYTGEWCITDMSSP--LSMTMVIMALALKLGLAPVHFWLPEV 118
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYGSSllyglsggsTQLSAIALALITSPSLGlaLALVFVIAGIAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  119 LQGLNLTTGLVLSTWQKLAPFILLIQI---PLPN-----HTLMTLLALLSVLVGGWGGLNQVQTRKILAYSSIAHLGWML 190
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAGFALAIRLlvtAFPSfdeqwKLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  191 --LISQFSTPLA--LLALFTYILMTTPAFL-ILKFTHAT---TINSLASSWTKSVVLTALTPLVLFSLGGLPPLSGFAPK 262
Cdd:PRK02504 317 igLVAGTEAGYAsmVFYLLAYLFMNLGAFAcVILFSLRTgtdQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGK 396

                        250       260       270
                 ....*....|....*....|....*....|..
gi 16357446  263 WLILQELTKQGLPIVATLAAMMALLSLYFYLR 294
Cdd:PRK02504 397 IYLFWAGWQAGLYLLVLVGLVTSVISIYYYIR 428
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-335 4.85e-14

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 72.60  E-value: 4.85e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   33 LEINTLAILPLMAQHPHPRAVEATTKYFLTQATAAAMILFASATNAWYTGEWCITDMSSPLS--------MTMVIMALAL 104
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGALAenptvvtaFGFVLLALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  105 KLGLAPVHFWLPEVLQGLNLTTGLVLSTWQKLAPFILLIQI-----------PLPNHTLMTLLALLSVLVGGWGGLNQVQ 173
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRIyftvfggdfrfALGLGWLLAVLALLSMLVGSLAALGQDD 294

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  174 TRKILAYSSIAHLGWMLLISQFSTPLALLA----LFTYILMTTPAFL----ILKFTHATTINSLaSSWTKSVVLTALTPL 245
Cdd:PRK08375 295 VKRVLAYSTVSQMGYILLGLALLTPLALAAgllhLLHHALMKGALFLaagaIEVTYGTRRLSEL-SGLGRRMPLTAAAFA 373

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  246 VL-FSLGGLPPLSGFAPKWLILQELTKQGLPIVATLAAMMALLSLYFYLRLSYslALTMAPNTPPASAPWRSIPQQSSSL 324
Cdd:PRK08375 374 VAsLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY--RAFFGPPPPGSEAPKQEAPLGMLAP 451

                        330
                 ....*....|.
gi 16357446  325 LAITTMMSILM 335
Cdd:PRK08375 452 SLALALLSLLL 462
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 50-299 1.24e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 65.38  E-value: 1.24e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   50 PRAVEATTKYFLTQATAAAMILFASATNAWYTGEWCITDMS-------SPLSM---------TMVIMALAL-----KLGL 108
Cdd:PRK12667 160 GDAVEAAIKYALIGAVGTTLYFLALAFLYATFGTLNMADLSakirglsFPLTGglagnpplaLGVALALALwaftiKAAI 239

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  109 APVHFWLPEV-----------LQGLNLTTG---------LVLSTWQKLAPFILLIQIplpnhtLMTLLALLSVLVGGWGG 168
Cdd:PRK12667 240 FPNHFWLPDAhpaapspvsamLSGLVVNVGayaiirflyTIFGISPSLIDFRAALSP------ILIILGAVSAIIGALMM 313

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  169 LNQVQTRKILAYSSIAHLGWMLLISQFSTPLALLALFTYILMTTPA----FL----ILKFTHATTINSLASSWTKSVVLT 240
Cdd:PRK12667 314 VVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAksllFLasgvFIHAAGTRDIDELAGLGRKMPIAS 393

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 16357446  241 ALTPLVLFSLGGLPPLSGFAPKWLILQELTKQGLPIVATLAAMMALLSLYFYLRLSYSL 299
Cdd:PRK12667 394 FAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYSL 452
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
150-335 9.53e-10

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 59.58  E-value: 9.53e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  150 HTLMTLLALLSVLVGGWGGLNQVQTRKILAYSSIAHLGWMLLISQFSTPLAL-----LALFTYILMTTPAFLI---LKFT 221
Cdd:PRK12663 272 HPLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGIngaifYLVHDMVVKTALFLIAgslVRLT 351

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  222 HATTINSLASSWTKSVVLTALTPLVLFSLGGLPPLSGFAPKWLILQELTKQGLPIVATLAAMMALLSLYFYLRLsysLAL 301
Cdd:PRK12663 352 GYRSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRI---FFL 428

                        170       180       190
                 ....*....|....*....|....*....|....
gi 16357446  302 TMAPNTPPASAPWRSIPQQSSSLLAITTMMSILM 335
Cdd:PRK12663 429 AYWGDKDGEEVNFKPIPLYRKLPLSILAVVVIAM 462
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-298 5.65e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 57.41  E-value: 5.65e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   33 LEINTLAILPLMA-QHPHPRAVEATTKYFLTQATAAAMILFASATNAWYTGEWCITDMSSPLSMTMVIMA---------- 101
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGIALLYGQYGTLNMAYLAVKMSENPTVVAkialalfiag 229

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  102 LALKLGLAPVHFWLPEVLQGL--NLTTGLVLSTWQKL-APFILLIQIPLPNHTLMTL------LALLSVLVGGWGGLNQV 172
Cdd:PRK08376 230 LAMKSGAVPVHMWLPDAYPAApsSISAMLLVIKQAGLyALARVLFSIYGPAINLATVgwviiiLGCLTMFVGVAMAVVQK 309

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  173 QTRKILAYSSIAHLGWMLL-----ISQFSTPL-----------ALLALFTYILMTTPAFLIL-KFTHATTINSL--ASSW 233
Cdd:PRK08376 310 DVKRLLAYHSVSQIGYMLLglgvgLAALGDPAmasygeialagGIYHIVNHALYKALLFLTAgAVIYETGTRNLneLGGL 389

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16357446  234 TKSVVLTALTPLV-LFSLGGLPPLSGFAPKWLILqELTKQGLPIVATLAAMMALLSLYFYLRLSYS 298
Cdd:PRK08376 390 ARTMPKTTIAFLIgAAAIVGLPPFNGFASKWLIY-ESSALFNPILGVIAMIGSVLTLASFVKVFHT 454
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-295 1.49e-08

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 55.86  E-value: 1.49e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  49 HPRAVEATTKYFLTQATAAAMILFASATNAWYTGEWC-----ITDMSSPLSMTMVIM-----ALALKLGLAPVHFWLPE- 117
Cdd:COG1008 156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTfdiaeLAAAPLPLTAQLLLFlaffiAFAVKVPMFPFHTWLPDa 235

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446 118 ----------VLQGLNLTTG----------LVLSTWQKLAPFILLiqiplpnhtlmtlLALLSVLVGGWGGLNQVQTRKI 177
Cdd:COG1008 236 hveaptagsvLLAGVLLKMGgygllrfalpLFPEASAYFAPLLAA-------------LGVIGIIYGALVALAQTDLKRL 302

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446 178 LAYSSIAHLGWMLL----ISQFSTPLALLALFTYILMTTPAFLILKF----THATTINSLASSWTKSVVLTALTPLVLFS 249
Cdd:COG1008 303 IAYSSVSHMGFVLLgifaLNPLGLQGAVLQMVSHGLITAALFLLVGVlydrTHTRDIADLGGLAKRMPVLAALFLLAALA 382

                       250       260       270       280
                ....*....|....*....|....*....|....*....|....*.
gi 16357446 250 LGGLPPLSGFAPKWLILQELTKQgLPIVATLAAMMALLSLYFYLRL 295
Cdd:COG1008 383 SLGLPGTSGFVGEFLVLLGAFQV-NPWLAILAALGLILTAAYLLWM 427
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-288 3.39e-08

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 54.95  E-value: 3.39e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446    50 PRAVEATTKYFLTQATAAAMILFASATNAWYTG------EWCITDMSSPLSMTMVI---MALALKLGLAPVHFWLPEVlQ 120
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGgtfdllELLNLPLPFGVQTWLFLaffIAFAVKVPLFPLHTWLPDA-H 230

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   121 GLNLTTGLVL--STWQKLAPF-ILLIQIPL-PN-----HTLMTLLALLSVLVGGWGGLNQVQTRKILAYSSIAHLGWMLL 191
Cdd:TIGR01972 231 VEAPTAGSVIlaGVLLKMGTYgFLRFNLPLfPDaslyfAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   192 ISQFSTPL----ALLALFTYILMTTPAFLILKF----THATTINSLASSWTKSVVLTALTPLVLFSLGGLPPLSGFAPKW 263
Cdd:TIGR01972 311 GIFSFNELgisgAVFQMISHGLITAALFLLVGVlyerAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEF 390

                         250       260
                  ....*....|....*....|....*
gi 16357446   264 LILQElTKQGLPIVATLAAMMALLS 288
Cdd:TIGR01972 391 LILLG-SFKVNPVVAFLAALGIVLA 414
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 290-340 5.35e-08

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 48.79  E-value: 5.35e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 16357446   290 YFYLRLSYSLALTMAPNTPPASAPWRSIPQQSSSLLAITTMMSILMLPIMP 340
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLSILLLPLTP 51
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 97-290 2.04e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 52.28  E-value: 2.04e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   97 MVIMALALKLGLAPVHFWLPE-----------VLQGLnLTTGLVLStwqklapfILLIQIPL-PNHTLMTLL---ALLSV 161
Cdd:PRK12665 214 VLLVAFGIKAAVFPLSFWLPDsyptapapvtaVFAGL-LTKVGVYA--------IIRTHTLLfPGGGLDTLLmvvALLTM 284

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  162 LVGGWGGLNQVQTRKILAYSSIAHLGWMLLISQFSTPLALLALFTY----ILMTTPAF----LILKFTHATTINSLASSW 233
Cdd:PRK12665 285 VVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYvahhITVQTTLFlvvgLIERQAGSSSLRRLGGLA 364

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  234 TKSVVLTALTPLVLFSLGGLPPLSGFAPKWLILQELTKQGLPIVATL---AAMMALLSLY 290
Cdd:PRK12665 365 KASPLLAVLFFVPALNLGGIPPFSGFIGKVALLEAGAEDGTWLAWALvagGVVTSLLTLY 424
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 150-295 4.38e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 48.41  E-value: 4.38e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  150 HTLMTLLALLSVLVGGWGGLNQVQTRKILAYSSIAHLGWMLLISQFSTPLALLALFTYIL--MTTPAFL------ILKFT 221
Cdd:PRK07691 275 HYLILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVGVAMMTESGMIGAIYYLIhdMIVKAALflligiMIKIT 354

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16357446  222 HATTINSLASSWTKSVVLTALTPLVLFSLGGLPPLSGFAPKWLILQELTKQGLPIVATLAAMMALLSLYFYLRL 295
Cdd:PRK07691 355 GTTDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYSVIKI 428
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 142-266 1.49e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 46.65  E-value: 1.49e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  142 LIQIPLPNHTLMTLLALLSVLVGGWGGLNQVQTRKILAYSSIAHLGWMLLISQFSTPLALLALFTYI----LMTTPAFLI 217
Cdd:PRK12662 271 FVFTTLPFNNVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIvnhsIVKSALFMV 350

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 16357446  218 L-----KFThATTINSLASSWTKSVVLTALTPLVLFSLGGLPPLSGFAPKWLIL 266
Cdd:PRK12662 351 SgsisyHFG-TTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 19-270 2.32e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 46.10  E-value: 2.32e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   19 ITFASSHWLLAWMGLEINTLAILPLMAQHPHPRAVEATTKYFLTQATAAAMILFASATNAWYTGEWCITDMSS--PLSMT 96
Cdd:PRK07234 109 AAFVCADLISLYVALEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFA 188

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   97 MVIMALALKLGLAPVHFWLPEVLQGLNLTTGLVLS-TWQKLAPFILLIQIPLPNHT--LMTLLALLSVLVGGWGGLNQVQ 173
Cdd:PRK07234 189 LIALGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSgVVVKAGVFPLVRCALDVPGLdlIVRIFGVGTALLGVLFALLEKD 268

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  174 TRKILAYSSIAHLGWMLLISQFSTPLALlalfTYILMTTPAFLILKFTHATTINSLASSWTKSVVLTALTpLVLFSLGGL 253
Cdd:PRK07234 269 LKRMLAFSTISQLGFILAAPLVGGLYAL----AHGLVKSTLFLCAGALPSRNFTELISQMLGIGKWIPLT-MASFSIAGF 343

                        250
                 ....*....|....*..
gi 16357446  254 PPLSGFAPKWLILQELT 270
Cdd:PRK07234 344 PLLAGFVSKVLTLKNLL 360
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
98-203 3.80e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 45.46  E-value: 3.80e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   98 VIMALALKLGLAPVHFWLPE-----------VLQG--LNLTT--------GLVLSTWQKLAPFilliqiplpnhtlMTLL 156
Cdd:PRK06473 211 ILVGFGIKIPLVPFHTWLPDahveastpvsvLLAGvlLKLGTygllrfgvGLFPEAWVYLAPW-------------LATW 277

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 16357446  157 ALLSVLVGGWGGLNQVQTRKILAYSSIAHLGWMLLISQFSTPLALLA 203
Cdd:PRK06473 278 AVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAATPLSILA 324
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 156-262 3.88e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 45.69  E-value: 3.88e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  156 LALLSVLVGGWGGLNQVQTRKILAYSSIAHLGWMLLISQFSTPLALLA----LFTYILMTTPAFLILKFTHATT----IN 227
Cdd:PRK12644 273 LGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAglamLLAHALFKAALFLVVGIIDHSTgtrdIR 352

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 16357446  228 SLASSWTKSVVLTALTPLVLFSLGGLPPLSGFAPK 262
Cdd:PRK12644 353 KLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 105-307 8.96e-05

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 44.30  E-value: 8.96e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  105 KLGLapvHFWLPEVLQGLNLTTGLVLSTWQKLAPFILLI-------QIPLPnHTLMTLLALLSVLVGGWGGLNQVQTRKI 177
Cdd:MTH00020 226 QLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLLIrssplfeQAPLA-LIIVTIVGSLTVFFAATVGLVQNDLKKV 301

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  178 LAYSSIAHLGWMLL---ISQFSTPLallalftYILMTTPAFLILKFTHA-TTINSLA--SSWTKSVVLTALTPLVL---- 247
Cdd:MTH00020 302 IAYSTCSQLGYMVVacgLSHYSISL-------FHLMNHAFFKALLFLSAgSVIHALSdeQDMRKMGGLISFLPLTYiffl 374

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16357446  248 ---FSLGGLPPLSGFAPKWLILQELTKQG-LPIVATLAAMMALLSLYFYLRLSYslaLTMAPNT 307
Cdd:MTH00020 375 igsLSLMGFPYLTGFYSKDLILELAFGQYyLIFAYWLGCFSALLTAFYSIRLIY---LTFLSNT 435
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
18-336 1.23e-04

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 43.53  E-value: 1.23e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   18 TITFASSHWLLAWMGLEINTLAILPLMAQHP-HPRAVEATTKYFLTQATAAAMILFASATNAWYTGEWCITD-------- 88
Cdd:PRK08168 114 HLLVLSDHLLVLIAAWAAISLALHRLLCFYPdRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSLSLSAlwahlaaq 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   89 -MSSPLSMTMVIMALA--LKLGLAPVHFWLPEVLQGLNLTTGLVLSTWQKLAPFILLIQIPL-----PNHTLMTLLALLS 160
Cdd:PRK08168 194 gASPSLQAAALLLVLAviLKTAQLPVHGWLIQVMEAPTPVSALLHAGVVNLGGFVLIRFAPLleqapPARWLLVLVGLAT 273

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  161 VLVGGWGGLNQVQTRKILAYSSIAHLGWMLL-ISQFSTPLALLALFTYILMTTPAFL---------ILKFTHATTINSLA 230
Cdd:PRK08168 274 AVLAGLVMLTRISIKVRLAWSTVAQMGFMLLeCGLGLYELALLHLVAHSLYKAHAFLsaseavrdtRLRRLQGPQSAAGV 353

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  231 SSWTKSVVLTALTPLVLFSLGGLPPLSGF-----APKWLILQELTKQGLPIVATLAAMMALLSlyFYLRLSYSLALTMAP 305
Cdd:PRK08168 354 VSLLLAPLLSAALVLLLQSLLPLGAWPWWwsavlALAWAPLLWQPCASGASTLSGLGLGLLLV--AGLTALAFLAHLLPL 431

                        330       340       350
                 ....*....|....*....|....*....|.
gi 16357446  306 NTPPASAPWRSipqqssslLAITTMMSILML 336
Cdd:PRK08168 432 GLADAPGPALG--------LAALAGMAALYL 454
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 151-294 2.51e-04

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 42.83  E-value: 2.51e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446 151 TLMTLLALLSVLVGGWGGLNQVQTRKILAYSSIAHLGWM-LLISQFSTPLALLALFTYILMTTPAFL----ILKFTHATT 225
Cdd:COG1009 276 TVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMfLALGVGAYVAALFHLLTHAFFKALLFLgagsVIHATGTRD 355

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16357446 226 INSLASSWTKSVVLTALTPLVLFSLGGLPPLSGFAPKWLILQELTKQG-----LPIVATLAA-MMALLSLYFYLR 294
Cdd:COG1009 356 IRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAALEAGglgplLLAVALLGAfLTAFYSFRLFFL 430
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 111-273 3.17e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 42.64  E-value: 3.17e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  111 VHFWLPEVLQGLNLTTGLVLSTWQKLAPFILLIQ-IPLPNHTLMTLLAL-----LSVLVGGWGGLNQVQTRKILAYSSIA 184
Cdd:MTH00032 244 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRsFPLFEKAPLTLLIItifgaLTAFFAATVGLVQNDLKKVIAYSTCS 323

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  185 HLGWMLLI--SQFSTPLALLALFTYILMTTPAFLIL-KFTHATTINSL----ASSWTKSVVLTALTPLV-LFSLGGLPPL 256
Cdd:MTH00032 324 QLGYMVLIigIEGSHNVGLFHLVNHAFFKALLFLSAgSVIHSTTVDEQdmrkMGGLIHSIPFTYTMMLIgSFSIMGLPYL 403

                        170
                 ....*....|....*..
gi 16357446  257 SGFAPKWLILqELTKQG 273
Cdd:MTH00032 404 TGFYSKDLIL-ELTYSG 419
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 151-288 3.21e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 42.60  E-value: 3.21e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  151 TLMTLLALLSVLVGGWGGLNQVQTRKILAYSSIAHLGWMLLISQFSTPLALLALFTYIL----------MTTPAflILKF 220
Cdd:PRK12647 260 TILPLFGGLTMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFLVahslykgalfMVAGI--IDHE 337

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16357446  221 THATTINSLASSWTKSVVLTALTPLVLFSLGGLPPLSGFAPKWLILQELTkqGLPIVATLAAMMALLS 288
Cdd:PRK12647 338 TGTRDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYEALL--EAPLWSLILTVAAVLG 403
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 67-336 3.78e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 42.11  E-value: 3.78e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   67 AAMILFASATNAWYTGEWCITDMSSPLSMTMVIMALAlKLGLAPVHFWLPE-----------------VLQGLNLTTGLV 129
Cdd:PRK06589 186 AVILIYTKTGNLDFVSGGLFSKNQSIILLLMFIYGIA-KTAIFPVHSWLPAamvahypvsallhavivVKTGLFCIYKIL 264

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  130 LSTWQklapfILLIQIPLPNHTLMTLLALLSVLVGGWGGLNQVQTRKILAYSSIAHLGWMLLISQFSTPLALLALFTYIL 209
Cdd:PRK06589 265 LYIFG-----LSYLQRIFAEFNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFILTPKALGAAILHLV 339

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  210 MTTPAFLILKFTHATTINSLASSWTKSVVLTALT-PLVLF-------SLGGLPPLSGFAPKWLILQELTKQGLPIVATLA 281
Cdd:PRK06589 340 SHSFAKICLFYSMGSIYSLKKEDQVDKLHGTSKSfPLISFiisisslSLIGIPIFSGFISKFLILLAASEQNQPWLSIIV 419

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16357446  282 AMMA-----LLSLYFYLRLSYSLALTMAPNTP-PASAPWRSIPQQSSSLLAITTMMSILML 336
Cdd:PRK06589 420 MLVViassiLSALYLLKILSSIYKPSLSENSFiTKSLPYLMQISVITCCCALTLFYFIQIL 480
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-301 4.21e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 41.94  E-value: 4.21e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   34 EINTLAILPLMAQHPHPRAVEATTKYFLTQATAAAMILFASATNAWYTGEWCITDM--------SSPL---SMTMVIMAL 102
Cdd:PRK06277 130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDIhnallvnpTSPViygGLLLLIFGL 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  103 ALKLGLAPVHFWLPEVLQGLNLTTGLVLSTWQKLAPFILLIQI--------PLPN-HTLMTLLALLSVLVGGWGGLNQVQ 173
Cdd:PRK06277 210 LYGSGLPPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLVIfklfgglsYFPSaQGVLIALSVLAMVFGVVMALLQTD 289

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  174 TRKILAYSSIAHLGWMLLISQFSTPLALLA-LF---TYILMTTPAFL----ILKFTHATTINSLASSWTKSVVLTALTPL 245
Cdd:PRK06277 290 YKRLLAYHAISQGGYVAAGLALGTPLGIVAgIFhaiNHVIYKSALFLgagiVSYRTKTSNLRKLGGLLPVMPVVAFMVLC 369

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 16357446  246 VLFSLGGLPPLSGFAPKWLILQELTKQGLPIVATLAAMMALLSLYFYLRLSYSLAL 301
Cdd:PRK06277 370 AKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVSIGTFVSMMKAFYLIYL 425
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 105-307 4.78e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 41.92  E-value: 4.78e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  105 KLGLapvHFWLPEVLQGLNLTTGLVLSTWQKLAPFILLIQI-PLPNH-----TLMTLLALLSVLVGGWGGLNQVQTRKIL 178
Cdd:MTH00210 227 QLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLIIRSgPLFEGsplalTIVTILGALTAFFAATVGVVQNDLKKVI 303

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  179 AYSSIAHLGWMLL---ISQFSTPLallalftYILMTTPAFLILKFTHA-TTINSLAS--------SWTKSVVLTALTPLV 246
Cdd:MTH00210 304 AYSTCSQLGYMVMvcgISNYSTSL-------FHLMNHAFFKALLFLSAgSVIHAVSDeqdmrkmgGLIKSIPFTYVMILI 376

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16357446  247 -LFSLGGLPPLSGFAPKWLILqELT--KQGLPIVATLAAMMALLSLYFYLRLSYslaLTMAPNT 307
Cdd:MTH00210 377 gSLSLMGFPYLTGFYSKDLIL-ELTydKYYIAFAYWLGSFSALLTAFYSIRLIY---LTFITNT 436
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 28-280 7.67e-04

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 41.07  E-value: 7.67e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   28 LAWMGLEINTLAILPLMAQHPHPRAVEATTKYFL------TQATAAAMILFASATNAWYTGE----WC-ITDMSSPLSMT 96
Cdd:PRK06458 132 LMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIicsvgvAFALFGTILVYANAATVMGDGEmailWTeLLKHASLLDPT 211

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   97 MVIMALAL-------KLGLAPVHFWLPE-----------VLQGLNLTTGLvlstWQKLAPFILLIQIP--LPNHTLMTLL 156
Cdd:PRK06458 212 LMKLAFVFlligfgtKVGLFPMHAWLPDahseapspvsaLLSGVLLNVAL----YAVLRYYILIDAAIgsDFPGRLLLIF 287

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  157 ALLSVLVGGWGGLNQVQTRKILAYSSIAHLGWMLLISQFSTPLALLALFtyILMTTPAFL----------ILKFTHATTI 226
Cdd:PRK06458 288 GLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAAL--LHMLNHSLTksaiffasgnVLQKYGTRDI 365

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 16357446  227 NSLASSWTKSVVLTALTPLVLFSLGGLPPLSGFAPKWLILQELTKQGLPIVATL 280
Cdd:PRK06458 366 NVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLILTAGLARGPLLIAIL 419
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 18-209 2.94e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 39.35  E-value: 2.94e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   18 TITFASSHWLLAWMGLEINTLAILPLMAQHPHPRAVEATTKYFLTQATA------AAMILFASATNAWYTGEWCITDMSS 91
Cdd:PRK08676 116 TFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNWTELAA 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   92 P----------LSMTMVIMALALKLGLAPVHFWLPE-----------VLQGLNLTTGLVlsTWQKLAPFILLIQIPLPNH 150
Cdd:PRK08676 196 HasllspsvlgASFLFIFIGFLAKSGLVPFHTWLPAayakapsvvsaLLSGTVLNIGIY--GILRLSALLRQSGAAEQFS 273

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 16357446  151 TLMTLLALLSVLVGGWGGLNQVQTRKILAYSSIAHLGWMLLISQFSTPLALLALFTYIL 209
Cdd:PRK08676 274 NVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHML 332
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-294 3.20e-03

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 39.42  E-value: 3.20e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   50 PRAVEATTKYFL-TQATAAAM---ILFASATNAWYTGEWCITD-MSSPLSMTMVI-------MALALKLGLAPVHFWLPE 117
Cdd:PRK05846 157 KNRIYAATKFFLyTLLGSLLMlvaIIYLVVVYYNATGTFDIADlLNLPLPPGVQYwlflaffIAFAVKMPMFPLHTWLPD 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  118 VLQ-----GLNLTTGLVLstwqKLAPFILL-IQIPL-PNH-----TLMTLLALLSVLVGGWGGLNQVQTRKILAYSSIAH 185
Cdd:PRK05846 237 AHVqaptaGSVLLAGILL----KMGAYGLLrFSLPLfPDAshefaPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISH 312

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446  186 LGWMLL-ISQFSTPLALLALFTYI---LMTTPAFLILKF----THATTINSLASSWTKSVVLTALTPLVLFSLGGLPPLS 257
Cdd:PRK05846 313 MGFVTLgIFAGNQLGIQGAIFQMIshgLSSAALFLLVGVlydrLHTRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTS 392

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 16357446  258 GFAPKWLILQElTKQGLPIVATLAA----MMALLSLYFYLR 294
Cdd:PRK05846 393 GFVGEFLILLG-SFQVNPVIAFIATtgliLAAVYSLWLYQR 432
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
95-202 3.23e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 39.31  E-value: 3.23e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16357446   95 MTMVIMALALKLGLAPVHFWLPEVLQGLNLTTGLVLS-TWQKLAPFIL----LIQIPLPNHTLMTLLAL---LSVLVGGW 166
Cdd:PRK07363 208 LTGLLLGFGIKIPLVPLHTWLPDAYTEASPAVAILLGgVLAKLGTYGLlrfgLQLFPQTWSLVAPGLAIigtISVIYGAL 287

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 16357446  167 GGLNQVQTRKILAYSSIAHLGWMLLISQFSTPLALL 202
Cdd:PRK07363 288 SAIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLL 323
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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