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Conserved domains on  [gi|16758104|ref|NP_445825|]
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peptidoglycan recognition protein 1 precursor [Rattus norvegicus]

Protein Classification

peptidoglycan recognition protein( domain architecture ID 11274790)

peptidoglycan recognition protein (PGRP) is a pattern recognition receptor that binds and may also hydrolyze peptidoglycans (PGNs) of bacterial cell walls

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PGRP smart00701
Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme; The ...
 21-161 7.78e-66

Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme; The bacteriophage molecule, but not its moth homologue, has been shown to have N-acetylmuramoyl-L-alanine amidase activity. One member of this family, Tag7, is a cytokine.


:

Pssm-ID: 128941  Cd Length: 142  Bit Score: 198.29  E-value: 7.78e-66
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758104     21 VVPRSEWKALPSECSKGLKKPVRYVVISHTAGSFCSSPDSCEQQARNVQLYQMKQLGWCDVAYNFLIGEDGHVYEGRGWT 100
Cdd:smart00701   3 IVPRSEWGAKPRGHTPRLTRPVRYVIIHHTATPNCYTDAQCAQILRNIQAYHMEELGWCDIGYNFLVGGDGKVYEGRGWN 82

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16758104    101 IKGDHTGPiWNPMSIGITFMGDYSHRVPAKRALRAALNLLKCGVSEGFLRSNYEVKGHRDV 161
Cdd:smart00701  83 VVGAHTGG-YNDISLGIAFIGNFTDKLPTDAALDAAQDLLACAVQRGHLSPDYKLVGHRQV 142
 
Name Accession Description Interval E-value
PGRP smart00701
Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme; The ...
 21-161 7.78e-66

Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme; The bacteriophage molecule, but not its moth homologue, has been shown to have N-acetylmuramoyl-L-alanine amidase activity. One member of this family, Tag7, is a cytokine.


Pssm-ID: 128941  Cd Length: 142  Bit Score: 198.29  E-value: 7.78e-66
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758104     21 VVPRSEWKALPSECSKGLKKPVRYVVISHTAGSFCSSPDSCEQQARNVQLYQMKQLGWCDVAYNFLIGEDGHVYEGRGWT 100
Cdd:smart00701   3 IVPRSEWGAKPRGHTPRLTRPVRYVIIHHTATPNCYTDAQCAQILRNIQAYHMEELGWCDIGYNFLVGGDGKVYEGRGWN 82

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16758104    101 IKGDHTGPiWNPMSIGITFMGDYSHRVPAKRALRAALNLLKCGVSEGFLRSNYEVKGHRDV 161
Cdd:smart00701  83 VVGAHTGG-YNDISLGIAFIGNFTDKLPTDAALDAAQDLLACAVQRGHLSPDYKLVGHRQV 142
PGRP cd06583
Peptidoglycan recognition proteins (PGRPs) are pattern recognition receptors that bind, and in ...
 41-169 5.49e-45

Peptidoglycan recognition proteins (PGRPs) are pattern recognition receptors that bind, and in certain cases, hydrolyze peptidoglycans (PGNs) of bacterial cell walls. PGRPs have been divided into three classes: short PGRPs (PGRP-S), that are small (20 kDa) extracellular proteins; intermediate PGRPs (PGRP-I) that are 40-45 kDa and are predicted to be transmembrane proteins; and long PGRPs (PGRP-L), up to 90 kDa, which may be either intracellular or transmembrane. Several structures of PGRPs are known in insects and mammals, some bound with substrates like Muramyl Tripeptide (MTP) or Tracheal Cytotoxin (TCT). The substrate binding site is conserved in PGRP-LCx, PGRP-LE, and PGRP-Ialpha proteins. This family includes Zn-dependent N-Acetylmuramoyl-L-alanine Amidase, EC:3.5.1.28. This enzyme cleaves the amide bond between N-acetylmuramoyl and L-amino acids, preferentially D-lactyl-L-Ala, in bacterial cell walls. The structure for the bacteriophage T7 lysozyme shows that two of the conserved histidines and a cysteine are zinc binding residues. Site-directed mutagenesis of T7 lysozyme indicates that two conserved residues, a Tyr and a Lys, are important for amidase activity.


Pssm-ID: 133475 [Multi-domain]  Cd Length: 126  Bit Score: 144.74  E-value: 5.49e-45
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758104  41 PVRYVVISHTAGSFCSSpdsCEQQARNVQLYQMkqLGWCDVAYNFLIGEDGHVYEGRGWTIKGDHTGPIWNPMSIGITFM 120
Cdd:cd06583   1 PVKYVVIHHTANPNCYT---AAAAVRYLQNYHM--RGWSDISYHFLVGGDGRIYQGRGWNYVGWHAGGNYNSYSIGIELI 75

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|
gi 16758104 121 GDYSHRVPAKRALRAALNLLKCGVSEGFLRSNYEVKGHRDV-QSTLSPGD 169
Cdd:cd06583  76 GNFDGGPPTAAQLEALAELLAYLVKRYGIPPDYRIVGHRDVsPGTECPGD 125
Amidase_2 pfam01510
N-acetylmuramoyl-L-alanine amidase; This family includes zinc amidases that have ...
 41-169 8.92e-31

N-acetylmuramoyl-L-alanine amidase; This family includes zinc amidases that have N-acetylmuramoyl-L-alanine amidase activity EC:3.5.1.28. This enzyme domain cleaves the amide bond between N-acetylmuramoyl and L-amino acids in bacterial cell walls (preferentially: D-lactyl-L-Ala). The structure is known for the bacteriophage T7 structure and shows that two of the conserved histidines are zinc binding.


Pssm-ID: 460236 [Multi-domain]  Cd Length: 122  Bit Score: 108.60  E-value: 8.92e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758104    41 PVRYVVISHTAGSFCSSPDSCEQQARNVqlyqmkqlGWCDVAYNFLIGEDGHVYE-----GRGWtikgdHTGP-IWNPMS 114
Cdd:pfam01510   1 PIRYIVIHHTAGPSFAGALLPYAACIAR--------GWSDVSYHYLIDRDGTIYQlvpenGRAW-----HAGNgGGNDRS 67

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 16758104   115 IGITFMGDYSHRVPAKRALRAALNLLKCGVSEGFLRSNYEVKGHRDVQSTLSPGD 169
Cdd:pfam01510  68 IGIELEGNFGGDPPTDAQYEALARLLADLCKRYGIPPDRRIVGHRDVGRKTDPGP 122
PHA00447 PHA00447
lysozyme
 74-168 1.21e-06

lysozyme


Pssm-ID: 177282 [Multi-domain]  Cd Length: 142  Bit Score: 45.92  E-value: 1.21e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758104   74 KQLGWCDVAYNFLIGEDGHVYEGRGWTIKGDHTGPiWNPMSIGITFMG--DYSHRVPAKRALrAALNLLKCGVSEgfLRS 151
Cdd:PHA00447  36 KEQGWLDVGYHFIIRRDGTVEEGRPEDVVGSHVKG-YNSNSVGVCLVGgiDDKGKFDANFTP-AQMQSLKSLLVT--LKA 111

                         90       100
                 ....*....|....*....|
gi 16758104  152 NY---EVKGHRDVQSTLSPG 168
Cdd:PHA00447 112 KYpgaEIKAHHDVAPKACPS 131
 
Name Accession Description Interval E-value
PGRP smart00701
Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme; The ...
 21-161 7.78e-66

Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme; The bacteriophage molecule, but not its moth homologue, has been shown to have N-acetylmuramoyl-L-alanine amidase activity. One member of this family, Tag7, is a cytokine.


Pssm-ID: 128941  Cd Length: 142  Bit Score: 198.29  E-value: 7.78e-66
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758104     21 VVPRSEWKALPSECSKGLKKPVRYVVISHTAGSFCSSPDSCEQQARNVQLYQMKQLGWCDVAYNFLIGEDGHVYEGRGWT 100
Cdd:smart00701   3 IVPRSEWGAKPRGHTPRLTRPVRYVIIHHTATPNCYTDAQCAQILRNIQAYHMEELGWCDIGYNFLVGGDGKVYEGRGWN 82

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16758104    101 IKGDHTGPiWNPMSIGITFMGDYSHRVPAKRALRAALNLLKCGVSEGFLRSNYEVKGHRDV 161
Cdd:smart00701  83 VVGAHTGG-YNDISLGIAFIGNFTDKLPTDAALDAAQDLLACAVQRGHLSPDYKLVGHRQV 142
PGRP cd06583
Peptidoglycan recognition proteins (PGRPs) are pattern recognition receptors that bind, and in ...
 41-169 5.49e-45

Peptidoglycan recognition proteins (PGRPs) are pattern recognition receptors that bind, and in certain cases, hydrolyze peptidoglycans (PGNs) of bacterial cell walls. PGRPs have been divided into three classes: short PGRPs (PGRP-S), that are small (20 kDa) extracellular proteins; intermediate PGRPs (PGRP-I) that are 40-45 kDa and are predicted to be transmembrane proteins; and long PGRPs (PGRP-L), up to 90 kDa, which may be either intracellular or transmembrane. Several structures of PGRPs are known in insects and mammals, some bound with substrates like Muramyl Tripeptide (MTP) or Tracheal Cytotoxin (TCT). The substrate binding site is conserved in PGRP-LCx, PGRP-LE, and PGRP-Ialpha proteins. This family includes Zn-dependent N-Acetylmuramoyl-L-alanine Amidase, EC:3.5.1.28. This enzyme cleaves the amide bond between N-acetylmuramoyl and L-amino acids, preferentially D-lactyl-L-Ala, in bacterial cell walls. The structure for the bacteriophage T7 lysozyme shows that two of the conserved histidines and a cysteine are zinc binding residues. Site-directed mutagenesis of T7 lysozyme indicates that two conserved residues, a Tyr and a Lys, are important for amidase activity.


Pssm-ID: 133475 [Multi-domain]  Cd Length: 126  Bit Score: 144.74  E-value: 5.49e-45
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758104  41 PVRYVVISHTAGSFCSSpdsCEQQARNVQLYQMkqLGWCDVAYNFLIGEDGHVYEGRGWTIKGDHTGPIWNPMSIGITFM 120
Cdd:cd06583   1 PVKYVVIHHTANPNCYT---AAAAVRYLQNYHM--RGWSDISYHFLVGGDGRIYQGRGWNYVGWHAGGNYNSYSIGIELI 75

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|
gi 16758104 121 GDYSHRVPAKRALRAALNLLKCGVSEGFLRSNYEVKGHRDV-QSTLSPGD 169
Cdd:cd06583  76 GNFDGGPPTAAQLEALAELLAYLVKRYGIPPDYRIVGHRDVsPGTECPGD 125
Ami_2 smart00644
Ami_2 domain;
40-167 2.98e-33

Ami_2 domain;


Pssm-ID: 214760 [Multi-domain]  Cd Length: 126  Bit Score: 114.76  E-value: 2.98e-33
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758104     40 KPVRYVVISHTAGSfcssPDSCEQQARNVQLYQMKqlgwcDVAYNFLIGEDGHVYEGRGWTIKGDHTG----PIWNPMSI 115
Cdd:smart00644   1 PPPRGIVIHHTANS----NASCANEARYMQNNHMN-----DIGYHFLVGGDGRVYQGVGWNYVAWHAGgahtPGYNDISI 71

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 16758104    116 GITFMGDYSHR-VPAKRALRAALNLLKCGVSEGFLRS--NYEVKGHRDVQSTLSP 167
Cdd:smart00644  72 GIEFIGSFDSDdEPFAEALYAALDLLAKLLKGAGLPPdgRYRIVGHRDVAPTEDP 126
Amidase_2 pfam01510
N-acetylmuramoyl-L-alanine amidase; This family includes zinc amidases that have ...
 41-169 8.92e-31

N-acetylmuramoyl-L-alanine amidase; This family includes zinc amidases that have N-acetylmuramoyl-L-alanine amidase activity EC:3.5.1.28. This enzyme domain cleaves the amide bond between N-acetylmuramoyl and L-amino acids in bacterial cell walls (preferentially: D-lactyl-L-Ala). The structure is known for the bacteriophage T7 structure and shows that two of the conserved histidines are zinc binding.


Pssm-ID: 460236 [Multi-domain]  Cd Length: 122  Bit Score: 108.60  E-value: 8.92e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758104    41 PVRYVVISHTAGSFCSSPDSCEQQARNVqlyqmkqlGWCDVAYNFLIGEDGHVYE-----GRGWtikgdHTGP-IWNPMS 114
Cdd:pfam01510   1 PIRYIVIHHTAGPSFAGALLPYAACIAR--------GWSDVSYHYLIDRDGTIYQlvpenGRAW-----HAGNgGGNDRS 67

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 16758104   115 IGITFMGDYSHRVPAKRALRAALNLLKCGVSEGFLRSNYEVKGHRDVQSTLSPGD 169
Cdd:pfam01510  68 IGIELEGNFGGDPPTDAQYEALARLLADLCKRYGIPPDRRIVGHRDVGRKTDPGP 122
PHA00447 PHA00447
lysozyme
 74-168 1.21e-06

lysozyme


Pssm-ID: 177282 [Multi-domain]  Cd Length: 142  Bit Score: 45.92  E-value: 1.21e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758104   74 KQLGWCDVAYNFLIGEDGHVYEGRGWTIKGDHTGPiWNPMSIGITFMG--DYSHRVPAKRALrAALNLLKCGVSEgfLRS 151
Cdd:PHA00447  36 KEQGWLDVGYHFIIRRDGTVEEGRPEDVVGSHVKG-YNSNSVGVCLVGgiDDKGKFDANFTP-AQMQSLKSLLVT--LKA 111

                         90       100
                 ....*....|....*....|
gi 16758104  152 NY---EVKGHRDVQSTLSPG 168
Cdd:PHA00447 112 KYpgaEIKAHHDVAPKACPS 131
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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