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Conserved domains on  [gi|17510145|ref|NP_490670|]
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HTH CENPB-type domain-containing protein [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CENPB smart00674
Putative DNA-binding domain in centromere protein B, mouse jerky and transposases;
80-142 3.27e-17

Putative DNA-binding domain in centromere protein B, mouse jerky and transposases;


:

Pssm-ID: 197828  Cd Length: 66  Bit Score: 72.71  E-value: 3.27e-17
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 17510145     80 PLKYDDVDKELIKWVHDQRKEKQRVTRRIIGETAKKISQN---SDFKASRGWLDKFMCRHNLSTRR 142
Cdd:smart00674   1 RRLYPLLEKALYEWILRQEALGIPISGEDIREKALEILQRlglENFKASKGWLTRFKKRHNIVKTK 66
HTH_28 pfam13518
Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is ...
 21-79 1.22e-04

Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.


:

Pssm-ID: 463908 [Multi-domain]  Cd Length: 52  Bit Score: 38.73  E-value: 1.22e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 17510145    21 FKLHAINYALEHKNISKAAKDLNVNRQNIQQWIaqkaeieKQLEDNGSTATKRLSGGGR 79
Cdd:pfam13518   1 ERLKIVLLALEGESIKEAARLFGISRSTVYRWI-------RRYREGGLEGLLPRRRRPK 52
 
Name Accession Description Interval E-value
CENPB smart00674
Putative DNA-binding domain in centromere protein B, mouse jerky and transposases;
80-142 3.27e-17

Putative DNA-binding domain in centromere protein B, mouse jerky and transposases;


Pssm-ID: 197828  Cd Length: 66  Bit Score: 72.71  E-value: 3.27e-17
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 17510145     80 PLKYDDVDKELIKWVHDQRKEKQRVTRRIIGETAKKISQN---SDFKASRGWLDKFMCRHNLSTRR 142
Cdd:smart00674   1 RRLYPLLEKALYEWILRQEALGIPISGEDIREKALEILQRlglENFKASKGWLTRFKKRHNIVKTK 66
HTH_Tnp_Tc5 pfam03221
Tc5 transposase DNA-binding domain;
83-139 3.73e-15

Tc5 transposase DNA-binding domain;


Pssm-ID: 460850  Cd Length: 63  Bit Score: 67.27  E-value: 3.73e-15
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 17510145    83 YDDVDKELIKWVHDQRKEKQRVTRRIIGETAKKISQ------NSDFKASRGWLDKFMCRHNLS 139
Cdd:pfam03221   1 YPDLEKALYEWILQLRARGIPITGPMIREKALELAQlaadlgEPDFKASKGWLDRFKKRHGIK 63
Csa3 COG3415
CRISPR-associated protein Csa3, CARF domain [Defense mechanisms]; CRISPR-associated protein ...
 22-145 9.80e-08

CRISPR-associated protein Csa3, CARF domain [Defense mechanisms]; CRISPR-associated protein Csa3, CARF domain is part of the Pathway/BioSystem: CRISPR-Cas system


Pssm-ID: 442641 [Multi-domain]  Cd Length: 325  Bit Score: 51.39  E-value: 9.80e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510145  22 KLHAINYALEHKNISKAAKDLNVNRQNIQQWIaqkaeieKQLEDNGSTATKRLSGGGRPLKYDDVDKE-LIKWVHDQR-K 99
Cdd:COG3415  28 RLRAVLLLAEGLSVREIAERLGVSRSTVYRWL-------KRYREGGLAGLKDRPRGGRPSKLSDEQRErLLELLREKSpD 100

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*.
gi 17510145 100 EKQRVTRRIIgetAKKISQNSDFKASRGWLDKFMCRHNLSTRRART 145
Cdd:COG3415 101 QGSRWTLAEL---AELLEEEFGVEVSPSTVRRLLKRLGLSYKKPRP 143
HTH_28 pfam13518
Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is ...
 21-79 1.22e-04

Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.


Pssm-ID: 463908 [Multi-domain]  Cd Length: 52  Bit Score: 38.73  E-value: 1.22e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 17510145    21 FKLHAINYALEHKNISKAAKDLNVNRQNIQQWIaqkaeieKQLEDNGSTATKRLSGGGR 79
Cdd:pfam13518   1 ERLKIVLLALEGESIKEAARLFGISRSTVYRWI-------RRYREGGLEGLLPRRRRPK 52
InsE COG2963
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];
11-72 3.74e-04

Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];


Pssm-ID: 442203 [Multi-domain]  Cd Length: 93  Bit Score: 38.37  E-value: 3.74e-04
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 17510145  11 KTRKRTYDLKFKLHAINYALEH-KNISKAAKDLNVNRQNIQQWIaqkaeieKQLEDNGSTATK 72
Cdd:COG2963   2 SKKRRRYSPEFKAEAVRLVLEGgASVAEVARELGISPSTLYRWV-------RQYREGGLGGFP 57
 
Name Accession Description Interval E-value
CENPB smart00674
Putative DNA-binding domain in centromere protein B, mouse jerky and transposases;
80-142 3.27e-17

Putative DNA-binding domain in centromere protein B, mouse jerky and transposases;


Pssm-ID: 197828  Cd Length: 66  Bit Score: 72.71  E-value: 3.27e-17
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 17510145     80 PLKYDDVDKELIKWVHDQRKEKQRVTRRIIGETAKKISQN---SDFKASRGWLDKFMCRHNLSTRR 142
Cdd:smart00674   1 RRLYPLLEKALYEWILRQEALGIPISGEDIREKALEILQRlglENFKASKGWLTRFKKRHNIVKTK 66
HTH_Tnp_Tc5 pfam03221
Tc5 transposase DNA-binding domain;
83-139 3.73e-15

Tc5 transposase DNA-binding domain;


Pssm-ID: 460850  Cd Length: 63  Bit Score: 67.27  E-value: 3.73e-15
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 17510145    83 YDDVDKELIKWVHDQRKEKQRVTRRIIGETAKKISQ------NSDFKASRGWLDKFMCRHNLS 139
Cdd:pfam03221   1 YPDLEKALYEWILQLRARGIPITGPMIREKALELAQlaadlgEPDFKASKGWLDRFKKRHGIK 63
Csa3 COG3415
CRISPR-associated protein Csa3, CARF domain [Defense mechanisms]; CRISPR-associated protein ...
 22-145 9.80e-08

CRISPR-associated protein Csa3, CARF domain [Defense mechanisms]; CRISPR-associated protein Csa3, CARF domain is part of the Pathway/BioSystem: CRISPR-Cas system


Pssm-ID: 442641 [Multi-domain]  Cd Length: 325  Bit Score: 51.39  E-value: 9.80e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510145  22 KLHAINYALEHKNISKAAKDLNVNRQNIQQWIaqkaeieKQLEDNGSTATKRLSGGGRPLKYDDVDKE-LIKWVHDQR-K 99
Cdd:COG3415  28 RLRAVLLLAEGLSVREIAERLGVSRSTVYRWL-------KRYREGGLAGLKDRPRGGRPSKLSDEQRErLLELLREKSpD 100

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*.
gi 17510145 100 EKQRVTRRIIgetAKKISQNSDFKASRGWLDKFMCRHNLSTRRART 145
Cdd:COG3415 101 QGSRWTLAEL---AELLEEEFGVEVSPSTVRRLLKRLGLSYKKPRP 143
HTH_28 pfam13518
Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is ...
 21-79 1.22e-04

Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.


Pssm-ID: 463908 [Multi-domain]  Cd Length: 52  Bit Score: 38.73  E-value: 1.22e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 17510145    21 FKLHAINYALEHKNISKAAKDLNVNRQNIQQWIaqkaeieKQLEDNGSTATKRLSGGGR 79
Cdd:pfam13518   1 ERLKIVLLALEGESIKEAARLFGISRSTVYRWI-------RRYREGGLEGLLPRRRRPK 52
InsE COG2963
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];
11-72 3.74e-04

Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];


Pssm-ID: 442203 [Multi-domain]  Cd Length: 93  Bit Score: 38.37  E-value: 3.74e-04
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 17510145  11 KTRKRTYDLKFKLHAINYALEH-KNISKAAKDLNVNRQNIQQWIaqkaeieKQLEDNGSTATK 72
Cdd:COG2963   2 SKKRRRYSPEFKAEAVRLVLEGgASVAEVARELGISPSTLYRWV-------RQYREGGLGGFP 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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