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Conserved domains on  [gi|17508653|ref|NP_490727|]
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Prion-like (glutamine/asparagine-rich) domain bearing protein pqn-59 [Caenorhabditis elegans]

Protein Classification

UBA_UBP2_like domain-containing protein( domain architecture ID 10198264)

UBA_UBP2_like domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UBA_UBP2_like cd14277
UBA domain found in ubiquitin-associated protein 2 (UBAP-2) like proteins; The family contains ...
 31-68 4.15e-11

UBA domain found in ubiquitin-associated protein 2 (UBAP-2) like proteins; The family contains some uncharacterized ubiquitin-associated proteins, including UBAP-2 and its homolog, UBAP2-like [UBP2L, also called protein NICE-4 (for newly identified cDNA from the epidermal differentiation complex EDC)], both of which contain an N-terminal ubiquitin-associated (UBA) domain along with a highly conserved, but function unknown domain (DUF3697).


:

Pssm-ID: 270463  Cd Length: 38  Bit Score: 57.96  E-value: 4.15e-11
                        10        20        30
                ....*....|....*....|....*....|....*...
gi 17508653  31 IQFMIKTIIETTGCTQAQAEIALLDTDNNLYGAIDHIL 68
Cdd:cd14277   1 IQEKVKQVMELTGRSEDEAVVALHDCDNDVNRAINFLL 38
PRK12323 super family cl46901
DNA polymerase III subunit gamma/tau;
193-302 4.42e-04

DNA polymerase III subunit gamma/tau;


The actual alignment was detected with superfamily member PRK14950:

Pssm-ID: 481241 [Multi-domain]  Cd Length: 585  Bit Score: 43.64  E-value: 4.42e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17508653  193 VDTTVTEVQPPVEESVTATVPTSSAPAPISFAAVAAAAHRKEALRKHQAQNPQPAAPPRRSLSPQPPLPSVAPVKEEPAA 272
Cdd:PRK14950 356 IEALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAA 435

                         90       100       110
                 ....*....|....*....|....*....|.
gi 17508653  273 APVFFEPE-TSHQPEKEDGFFQNESSVLAEE 302
Cdd:PRK14950 436 IPVDEKPKyTPPAPPKEEEKALIADGDVLEQ 466
 
Name Accession Description Interval E-value
UBA_UBP2_like cd14277
UBA domain found in ubiquitin-associated protein 2 (UBAP-2) like proteins; The family contains ...
 31-68 4.15e-11

UBA domain found in ubiquitin-associated protein 2 (UBAP-2) like proteins; The family contains some uncharacterized ubiquitin-associated proteins, including UBAP-2 and its homolog, UBAP2-like [UBP2L, also called protein NICE-4 (for newly identified cDNA from the epidermal differentiation complex EDC)], both of which contain an N-terminal ubiquitin-associated (UBA) domain along with a highly conserved, but function unknown domain (DUF3697).


Pssm-ID: 270463  Cd Length: 38  Bit Score: 57.96  E-value: 4.15e-11
                        10        20        30
                ....*....|....*....|....*....|....*...
gi 17508653  31 IQFMIKTIIETTGCTQAQAEIALLDTDNNLYGAIDHIL 68
Cdd:cd14277   1 IQEKVKQVMELTGRSEDEAVVALHDCDNDVNRAINFLL 38
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 193-302 4.42e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 43.64  E-value: 4.42e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17508653  193 VDTTVTEVQPPVEESVTATVPTSSAPAPISFAAVAAAAHRKEALRKHQAQNPQPAAPPRRSLSPQPPLPSVAPVKEEPAA 272
Cdd:PRK14950 356 IEALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAA 435

                         90       100       110
                 ....*....|....*....|....*....|.
gi 17508653  273 APVFFEPE-TSHQPEKEDGFFQNESSVLAEE 302
Cdd:PRK14950 436 IPVDEKPKyTPPAPPKEEEKALIADGDVLEQ 466
 
Name Accession Description Interval E-value
UBA_UBP2_like cd14277
UBA domain found in ubiquitin-associated protein 2 (UBAP-2) like proteins; The family contains ...
 31-68 4.15e-11

UBA domain found in ubiquitin-associated protein 2 (UBAP-2) like proteins; The family contains some uncharacterized ubiquitin-associated proteins, including UBAP-2 and its homolog, UBAP2-like [UBP2L, also called protein NICE-4 (for newly identified cDNA from the epidermal differentiation complex EDC)], both of which contain an N-terminal ubiquitin-associated (UBA) domain along with a highly conserved, but function unknown domain (DUF3697).


Pssm-ID: 270463  Cd Length: 38  Bit Score: 57.96  E-value: 4.15e-11
                        10        20        30
                ....*....|....*....|....*....|....*...
gi 17508653  31 IQFMIKTIIETTGCTQAQAEIALLDTDNNLYGAIDHIL 68
Cdd:cd14277   1 IQEKVKQVMELTGRSEDEAVVALHDCDNDVNRAINFLL 38
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 193-302 4.42e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 43.64  E-value: 4.42e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17508653  193 VDTTVTEVQPPVEESVTATVPTSSAPAPISFAAVAAAAHRKEALRKHQAQNPQPAAPPRRSLSPQPPLPSVAPVKEEPAA 272
Cdd:PRK14950 356 IEALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAA 435

                         90       100       110
                 ....*....|....*....|....*....|.
gi 17508653  273 APVFFEPE-TSHQPEKEDGFFQNESSVLAEE 302
Cdd:PRK14950 436 IPVDEKPKyTPPAPPKEEEKALIADGDVLEQ 466
flhF PRK06995
flagellar biosynthesis protein FlhF;
193-274 7.08e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 39.56  E-value: 7.08e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17508653  193 VDTTVTEVQPPVEESVTATVPTSSAPAPISFAAVAAAAHRKEALRKHQAQNPQPAAPPRrsLSPQPPLPSVAPVKEEPAA 272
Cdd:PRK06995  52 APPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAA--PEAQAPAAPAERAAAENAA 129


                 ..
gi 17508653  273 AP 274
Cdd:PRK06995 130 RR 131
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 197-288 7.55e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 39.70  E-value: 7.55e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17508653  197 VTEVQPPVEESVTATVPTSSAPAPISFAAVAAAAHRKEALRKHQAQNPQPAAPPRRslsPQPPLPSVAPVKEEPAAAPVF 276
Cdd:PRK14951 370 AEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAP---VAAPAAAAPAAAPAAAPAAVA 446

                         90
                 ....*....|..
gi 17508653  277 FEPETSHQPEKE 288
Cdd:PRK14951 447 LAPAPPAQAAPE 458
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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