NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|17506175|ref|NP_491253|]
View 

Antibacterial factor-related peptide 1 [Caenorhabditis elegans]

Protein Classification

Antimicrobial25 domain-containing protein( domain architecture ID 11245672)

Antimicrobial25 domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Antimicrobial25 pfam16839
Nematode antimicrobial peptide; This family of antimicrobial peptides is found in nematodes.
 22-71 2.10e-18

Nematode antimicrobial peptide; This family of antimicrobial peptides is found in nematodes.


:

Pssm-ID: 407086  Cd Length: 54  Bit Score: 71.07  E-value: 2.10e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 17506175   22 SCARMDVPVMQRIAQGLCTSSCTAQKCMTGICKKVDSHPTCFCGGCSNAN 71
Cdd:pfam16839  1 TCARMDVPVLDKAAQGLCITSCSMQNCGTGYCKKRDGRPTCVCGRCANGG 50
 
Name Accession Description Interval E-value
Antimicrobial25 pfam16839
Nematode antimicrobial peptide; This family of antimicrobial peptides is found in nematodes.
 22-71 2.10e-18

Nematode antimicrobial peptide; This family of antimicrobial peptides is found in nematodes.


Pssm-ID: 407086  Cd Length: 54  Bit Score: 71.07  E-value: 2.10e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 17506175   22 SCARMDVPVMQRIAQGLCTSSCTAQKCMTGICKKVDSHPTCFCGGCSNAN 71
Cdd:pfam16839  1 TCARMDVPVLDKAAQGLCITSCSMQNCGTGYCKKRDGRPTCVCGRCANGG 50
 
Name Accession Description Interval E-value
Antimicrobial25 pfam16839
Nematode antimicrobial peptide; This family of antimicrobial peptides is found in nematodes.
 22-71 2.10e-18

Nematode antimicrobial peptide; This family of antimicrobial peptides is found in nematodes.


Pssm-ID: 407086  Cd Length: 54  Bit Score: 71.07  E-value: 2.10e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 17506175   22 SCARMDVPVMQRIAQGLCTSSCTAQKCMTGICKKVDSHPTCFCGGCSNAN 71
Cdd:pfam16839  1 TCARMDVPVLDKAAQGLCITSCSMQNCGTGYCKKRDGRPTCVCGRCANGG 50
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH