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Conserved domains on  [gi|17510907|ref|NP_491537|]
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Condensin-2 complex subunit hcp-6 [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cnd1 super family cl38367
non-SMC mitotic condensation complex subunit 1; The three non-SMC (structural maintenance of ...
 1057-1153 7.39e-05

non-SMC mitotic condensation complex subunit 1; The three non-SMC (structural maintenance of chromosomes) subunits of the mitotic condensation complex are Cnd1-3. The whole complex is essential for viability and the condensing of chromosomes in mitosis.


The actual alignment was detected with superfamily member pfam12717:

Pssm-ID: 463677 [Multi-domain]  Cd Length: 162  Bit Score: 44.76  E-value: 7.39e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510907   1057 IRSNIVLAIGDICSSYKTDRYAPMLAASLCDPSVIVRRHAINQIARLISFGIFRFNGEI--MIRMMlasLDANEDVRNDA 1134
Cdd:pfam12717    2 IRALAIRTMGCIRFPNLVEYLTEPLYRRLKDEDPYVRKTAAMCVAKLILPDMVKVKGFIseLAKLL---EDPNPMVVANA 78

                           90
                   ....*....|....*....
gi 17510907   1135 KLYISEVLQSEEPNFFPLN 1153
Cdd:pfam12717   79 LAALTEISEKDPNAIYNLL 97
 
Name Accession Description Interval E-value
Cnd1 pfam12717
non-SMC mitotic condensation complex subunit 1; The three non-SMC (structural maintenance of ...
 1057-1153 7.39e-05

non-SMC mitotic condensation complex subunit 1; The three non-SMC (structural maintenance of chromosomes) subunits of the mitotic condensation complex are Cnd1-3. The whole complex is essential for viability and the condensing of chromosomes in mitosis.


Pssm-ID: 463677 [Multi-domain]  Cd Length: 162  Bit Score: 44.76  E-value: 7.39e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510907   1057 IRSNIVLAIGDICSSYKTDRYAPMLAASLCDPSVIVRRHAINQIARLISFGIFRFNGEI--MIRMMlasLDANEDVRNDA 1134
Cdd:pfam12717    2 IRALAIRTMGCIRFPNLVEYLTEPLYRRLKDEDPYVRKTAAMCVAKLILPDMVKVKGFIseLAKLL---EDPNPMVVANA 78

                           90
                   ....*....|....*....
gi 17510907   1135 KLYISEVLQSEEPNFFPLN 1153
Cdd:pfam12717   79 LAALTEISEKDPNAIYNLL 97
COG5098 COG5098
Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell ...
 1031-1145 5.04e-04

Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning];


Pssm-ID: 227429 [Multi-domain]  Cd Length: 1128  Bit Score: 44.97  E-value: 5.04e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510907 1031 MILAHDRLLKLMPMLVKQLQYNTAHQIRSNIVLAIGDICSSYKT--DRYAPMLAASLCDPSVIVRRHAINQIARLISFGI 1108
Cdd:COG5098  924 MCLSFEFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTtaDEHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQ 1003

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 17510907 1109 FRFNGEIMIrMMLASLDANEDVRNDAKLYISEVLQSE 1145
Cdd:COG5098 1004 LKVKGQLGK-MALLLTDEDAEISDMARHFFTQIAKKD 1039
 
Name Accession Description Interval E-value
Cnd1 pfam12717
non-SMC mitotic condensation complex subunit 1; The three non-SMC (structural maintenance of ...
 1057-1153 7.39e-05

non-SMC mitotic condensation complex subunit 1; The three non-SMC (structural maintenance of chromosomes) subunits of the mitotic condensation complex are Cnd1-3. The whole complex is essential for viability and the condensing of chromosomes in mitosis.


Pssm-ID: 463677 [Multi-domain]  Cd Length: 162  Bit Score: 44.76  E-value: 7.39e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510907   1057 IRSNIVLAIGDICSSYKTDRYAPMLAASLCDPSVIVRRHAINQIARLISFGIFRFNGEI--MIRMMlasLDANEDVRNDA 1134
Cdd:pfam12717    2 IRALAIRTMGCIRFPNLVEYLTEPLYRRLKDEDPYVRKTAAMCVAKLILPDMVKVKGFIseLAKLL---EDPNPMVVANA 78

                           90
                   ....*....|....*....
gi 17510907   1135 KLYISEVLQSEEPNFFPLN 1153
Cdd:pfam12717   79 LAALTEISEKDPNAIYNLL 97
COG5098 COG5098
Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell ...
 1031-1145 5.04e-04

Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning];


Pssm-ID: 227429 [Multi-domain]  Cd Length: 1128  Bit Score: 44.97  E-value: 5.04e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510907 1031 MILAHDRLLKLMPMLVKQLQYNTAHQIRSNIVLAIGDICSSYKT--DRYAPMLAASLCDPSVIVRRHAINQIARLISFGI 1108
Cdd:COG5098  924 MCLSFEFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTtaDEHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQ 1003

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 17510907 1109 FRFNGEIMIrMMLASLDANEDVRNDAKLYISEVLQSE 1145
Cdd:COG5098 1004 LKVKGQLGK-MALLLTDEDAEISDMARHFFTQIAKKD 1039
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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