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Conserved domains on  [gi|17508855|ref|NP_493343|]
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putative 3',5'-cyclic phosphodiesterase pde-1 [Caenorhabditis elegans]

Protein Classification

calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1( domain architecture ID 10763433)

calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1 (PDE1) is a cyclic nucleotide phosphodiesterase with a dual specificity for the second messengers cAMP and cGMP, which are key regulators of many important physiological processes

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PDEase_I pfam00233
3'5'-cyclic nucleotide phosphodiesterase;
332-560 1.53e-104

3'5'-cyclic nucleotide phosphodiesterase;


:

Pssm-ID: 459723  Cd Length: 238  Bit Score: 317.18  E-value: 1.53e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17508855   332 YHNVVHAADVTQSSHFMLSQTGLANSLGDLELLAVLFGALIHDYEHTGHTNNFHIQSQSQFAMLYNDRSVLENHHVSSCF 411
Cdd:pfam00233   1 YHNWRHAFDVTQTMYYLLKTGKLKEVLTDLEILALLIAALCHDVDHPGTNNAFLIKTKSPLAILYNDSSVLENHHCATAF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17508855   412 RLMKEDDKNILTHLTRDEYKELRNMVIEIVLATDMSTHFMQIKTMKSMLSLPEGIDKNKA--------LCLIVHACDISH 483
Cdd:pfam00233  81 QILQDEECNIFSNLSDEEYKEVRKLIISLILATDMAKHFELLKKFKSLLESKKTLDFLENeedrrlllLSMLIKAADISN 160

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 17508855   484 PAKPWNLHERWTEGVLEEFFRQGDLEASMGLPYSPLCDRH-TVHVADSQIGFIDFIVEPTMVVCGELLVKMVEPLVSL 560
Cdd:pfam00233 161 PTRPWEISKKWADLVAEEFFRQGDLEKELGLPVSPLMDREkKTSLPKSQIGFIDFIVLPLFEALAKLFPELQPLLDQL 238
PDEase_I_N pfam08499
3'5'-cyclic nucleotide phosphodiesterase N-terminal; This domain is found to the N-terminus of ...
 191-248 2.39e-28

3'5'-cyclic nucleotide phosphodiesterase N-terminal; This domain is found to the N-terminus of the calcium/calmodulin-dependent 3'5'-cyclic nucleotide phosphodiesterase domain (pfam00233).


:

Pssm-ID: 462497 [Multi-domain]  Cd Length: 61  Bit Score: 107.81  E-value: 2.39e-28
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 17508855   191 RICDEDDDLAEVTPETVPDEVREWLAATFTRQNAGKKR---DKPKFKSVANAIRTGIFFEK 248
Cdd:pfam08499   1 RLLDEEDELSEIQSDAVPSEVRDWLASTFTRQMAAHKRrseEKPKFRSVAHAVQAGIFVER 61
 
Name Accession Description Interval E-value
PDEase_I pfam00233
3'5'-cyclic nucleotide phosphodiesterase;
332-560 1.53e-104

3'5'-cyclic nucleotide phosphodiesterase;


Pssm-ID: 459723  Cd Length: 238  Bit Score: 317.18  E-value: 1.53e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17508855   332 YHNVVHAADVTQSSHFMLSQTGLANSLGDLELLAVLFGALIHDYEHTGHTNNFHIQSQSQFAMLYNDRSVLENHHVSSCF 411
Cdd:pfam00233   1 YHNWRHAFDVTQTMYYLLKTGKLKEVLTDLEILALLIAALCHDVDHPGTNNAFLIKTKSPLAILYNDSSVLENHHCATAF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17508855   412 RLMKEDDKNILTHLTRDEYKELRNMVIEIVLATDMSTHFMQIKTMKSMLSLPEGIDKNKA--------LCLIVHACDISH 483
Cdd:pfam00233  81 QILQDEECNIFSNLSDEEYKEVRKLIISLILATDMAKHFELLKKFKSLLESKKTLDFLENeedrrlllLSMLIKAADISN 160

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 17508855   484 PAKPWNLHERWTEGVLEEFFRQGDLEASMGLPYSPLCDRH-TVHVADSQIGFIDFIVEPTMVVCGELLVKMVEPLVSL 560
Cdd:pfam00233 161 PTRPWEISKKWADLVAEEFFRQGDLEKELGLPVSPLMDREkKTSLPKSQIGFIDFIVLPLFEALAKLFPELQPLLDQL 238
PDEase_I_N pfam08499
3'5'-cyclic nucleotide phosphodiesterase N-terminal; This domain is found to the N-terminus of ...
 191-248 2.39e-28

3'5'-cyclic nucleotide phosphodiesterase N-terminal; This domain is found to the N-terminus of the calcium/calmodulin-dependent 3'5'-cyclic nucleotide phosphodiesterase domain (pfam00233).


Pssm-ID: 462497 [Multi-domain]  Cd Length: 61  Bit Score: 107.81  E-value: 2.39e-28
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 17508855   191 RICDEDDDLAEVTPETVPDEVREWLAATFTRQNAGKKR---DKPKFKSVANAIRTGIFFEK 248
Cdd:pfam08499   1 RLLDEEDELSEIQSDAVPSEVRDWLASTFTRQMAAHKRrseEKPKFRSVAHAVQAGIFVER 61
HDc cd00077
Metal dependent phosphohydrolases with conserved 'HD' motif
 332-503 1.45e-15

Metal dependent phosphohydrolases with conserved 'HD' motif


Pssm-ID: 238032 [Multi-domain]  Cd Length: 145  Bit Score: 74.30  E-value: 1.45e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17508855 332 YHNVVHAADVTQSSHFMLSQTGLanslGDLELLAVLFGALIHDYEHTGHTNNFhiqsqsqfamlYNDRSVLENHHVSSCF 411
Cdd:cd00077   1 EHRFEHSLRVAQLARRLAEELGL----SEEDIELLRLAALLHDIGKPGTPDAI-----------TEEESELEKDHAIVGA 65

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17508855 412 RLmkeddknilthLTRDEYKELRNMVIEIVLATDMStHFMQIKTMKSMLSLpeGIDKNKALCLIVHACDISHPAK--PWN 489
Cdd:cd00077  66 EI-----------LRELLLEEVIKLIDELILAVDAS-HHERLDGLGYPDGL--KGEEITLEARIVKLADRLDALRrdSRE 131

                       170
                ....*....|....
gi 17508855 490 LHERWTEGVLEEFF 503
Cdd:cd00077 132 KRRRIAEEDLEELL 145
HDc smart00471
Metal dependent phosphohydrolases with conserved 'HD' motif; Includes eukaryotic cyclic ...
 330-494 1.58e-14

Metal dependent phosphohydrolases with conserved 'HD' motif; Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).


Pssm-ID: 214679 [Multi-domain]  Cd Length: 124  Bit Score: 70.40  E-value: 1.58e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17508855    330 NPYHNVVHAADVTQSSHFmlsqtgLANSLGDLELLAVLFGALIHDYEHTGHTNNFhiqsqsqfamlYNDRSVLENHHVSS 409
Cdd:smart00471   1 SDYHVFEHSLRVAQLAAA------LAEELGLLDIELLLLAALLHDIGKPGTPDSF-----------LVKTSVLEDHHFIG 63

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17508855    410 CFRLMKEDDKNILthltrdeykelrnmviEIVLATDMSTHFMQIKTMKSMLSLPEgidknkalCLIVHACDISHPAKPWN 489
Cdd:smart00471  64 AEILLEEEEPRIL----------------EEILRTAILSHHERPDGLRGEPITLE--------ARIVKVADRLDALRADR 119


                   ....*
gi 17508855    490 LHERW 494
Cdd:smart00471 120 RYRRV 124
 
Name Accession Description Interval E-value
PDEase_I pfam00233
3'5'-cyclic nucleotide phosphodiesterase;
332-560 1.53e-104

3'5'-cyclic nucleotide phosphodiesterase;


Pssm-ID: 459723  Cd Length: 238  Bit Score: 317.18  E-value: 1.53e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17508855   332 YHNVVHAADVTQSSHFMLSQTGLANSLGDLELLAVLFGALIHDYEHTGHTNNFHIQSQSQFAMLYNDRSVLENHHVSSCF 411
Cdd:pfam00233   1 YHNWRHAFDVTQTMYYLLKTGKLKEVLTDLEILALLIAALCHDVDHPGTNNAFLIKTKSPLAILYNDSSVLENHHCATAF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17508855   412 RLMKEDDKNILTHLTRDEYKELRNMVIEIVLATDMSTHFMQIKTMKSMLSLPEGIDKNKA--------LCLIVHACDISH 483
Cdd:pfam00233  81 QILQDEECNIFSNLSDEEYKEVRKLIISLILATDMAKHFELLKKFKSLLESKKTLDFLENeedrrlllLSMLIKAADISN 160

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 17508855   484 PAKPWNLHERWTEGVLEEFFRQGDLEASMGLPYSPLCDRH-TVHVADSQIGFIDFIVEPTMVVCGELLVKMVEPLVSL 560
Cdd:pfam00233 161 PTRPWEISKKWADLVAEEFFRQGDLEKELGLPVSPLMDREkKTSLPKSQIGFIDFIVLPLFEALAKLFPELQPLLDQL 238
PDEase_I_N pfam08499
3'5'-cyclic nucleotide phosphodiesterase N-terminal; This domain is found to the N-terminus of ...
 191-248 2.39e-28

3'5'-cyclic nucleotide phosphodiesterase N-terminal; This domain is found to the N-terminus of the calcium/calmodulin-dependent 3'5'-cyclic nucleotide phosphodiesterase domain (pfam00233).


Pssm-ID: 462497 [Multi-domain]  Cd Length: 61  Bit Score: 107.81  E-value: 2.39e-28
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 17508855   191 RICDEDDDLAEVTPETVPDEVREWLAATFTRQNAGKKR---DKPKFKSVANAIRTGIFFEK 248
Cdd:pfam08499   1 RLLDEEDELSEIQSDAVPSEVRDWLASTFTRQMAAHKRrseEKPKFRSVAHAVQAGIFVER 61
HDc cd00077
Metal dependent phosphohydrolases with conserved 'HD' motif
 332-503 1.45e-15

Metal dependent phosphohydrolases with conserved 'HD' motif


Pssm-ID: 238032 [Multi-domain]  Cd Length: 145  Bit Score: 74.30  E-value: 1.45e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17508855 332 YHNVVHAADVTQSSHFMLSQTGLanslGDLELLAVLFGALIHDYEHTGHTNNFhiqsqsqfamlYNDRSVLENHHVSSCF 411
Cdd:cd00077   1 EHRFEHSLRVAQLARRLAEELGL----SEEDIELLRLAALLHDIGKPGTPDAI-----------TEEESELEKDHAIVGA 65

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17508855 412 RLmkeddknilthLTRDEYKELRNMVIEIVLATDMStHFMQIKTMKSMLSLpeGIDKNKALCLIVHACDISHPAK--PWN 489
Cdd:cd00077  66 EI-----------LRELLLEEVIKLIDELILAVDAS-HHERLDGLGYPDGL--KGEEITLEARIVKLADRLDALRrdSRE 131

                       170
                ....*....|....
gi 17508855 490 LHERWTEGVLEEFF 503
Cdd:cd00077 132 KRRRIAEEDLEELL 145
HDc smart00471
Metal dependent phosphohydrolases with conserved 'HD' motif; Includes eukaryotic cyclic ...
 330-494 1.58e-14

Metal dependent phosphohydrolases with conserved 'HD' motif; Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).


Pssm-ID: 214679 [Multi-domain]  Cd Length: 124  Bit Score: 70.40  E-value: 1.58e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17508855    330 NPYHNVVHAADVTQSSHFmlsqtgLANSLGDLELLAVLFGALIHDYEHTGHTNNFhiqsqsqfamlYNDRSVLENHHVSS 409
Cdd:smart00471   1 SDYHVFEHSLRVAQLAAA------LAEELGLLDIELLLLAALLHDIGKPGTPDSF-----------LVKTSVLEDHHFIG 63

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17508855    410 CFRLMKEDDKNILthltrdeykelrnmviEIVLATDMSTHFMQIKTMKSMLSLPEgidknkalCLIVHACDISHPAKPWN 489
Cdd:smart00471  64 AEILLEEEEPRIL----------------EEILRTAILSHHERPDGLRGEPITLE--------ARIVKVADRLDALRADR 119


                   ....*
gi 17508855    490 LHERW 494
Cdd:smart00471 120 RYRRV 124
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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