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Conserved domains on  [gi|17509957|ref|NP_493363|]
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Coiled-coil domain-containing protein 86 [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cgr1 super family cl23736
Cgr1 family; Members of this family are coiled-coil proteins that are involved in pre-rRNA ...
 13-96 8.39e-06

Cgr1 family; Members of this family are coiled-coil proteins that are involved in pre-rRNA processing.


The actual alignment was detected with superfamily member pfam03879:

Pssm-ID: 427562 [Multi-domain]  Cd Length: 107  Bit Score: 41.46  E-value: 8.39e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17509957    13 TCKSNRWWKTKQEKKHSEIKKVKTLKSTWDKKMELKAKKDMVKRVQDNIREKQVQERQEKKERKVEQEKRRLENERKAEI 92
Cdd:pfam03879   4 MRVSGKPWKAEKKAFRRSSLVVGPKSKSWEKRQEKRLELKAIKAKEKELKDEKEAERQRRIQAIKERREAKEEKERYEEL 83


                  ....
gi 17509957    93 VQKI 96
Cdd:pfam03879  84 AAKM 87
 
Name Accession Description Interval E-value
Cgr1 pfam03879
Cgr1 family; Members of this family are coiled-coil proteins that are involved in pre-rRNA ...
 13-96 8.39e-06

Cgr1 family; Members of this family are coiled-coil proteins that are involved in pre-rRNA processing.


Pssm-ID: 427562 [Multi-domain]  Cd Length: 107  Bit Score: 41.46  E-value: 8.39e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17509957    13 TCKSNRWWKTKQEKKHSEIKKVKTLKSTWDKKMELKAKKDMVKRVQDNIREKQVQERQEKKERKVEQEKRRLENERKAEI 92
Cdd:pfam03879   4 MRVSGKPWKAEKKAFRRSSLVVGPKSKSWEKRQEKRLELKAIKAKEKELKDEKEAERQRRIQAIKERREAKEEKERYEEL 83


                  ....
gi 17509957    93 VQKI 96
Cdd:pfam03879  84 AAKM 87
 
Name Accession Description Interval E-value
Cgr1 pfam03879
Cgr1 family; Members of this family are coiled-coil proteins that are involved in pre-rRNA ...
 13-96 8.39e-06

Cgr1 family; Members of this family are coiled-coil proteins that are involved in pre-rRNA processing.


Pssm-ID: 427562 [Multi-domain]  Cd Length: 107  Bit Score: 41.46  E-value: 8.39e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17509957    13 TCKSNRWWKTKQEKKHSEIKKVKTLKSTWDKKMELKAKKDMVKRVQDNIREKQVQERQEKKERKVEQEKRRLENERKAEI 92
Cdd:pfam03879   4 MRVSGKPWKAEKKAFRRSSLVVGPKSKSWEKRQEKRLELKAIKAKEKELKDEKEAERQRRIQAIKERREAKEEKERYEEL 83


                  ....
gi 17509957    93 VQKI 96
Cdd:pfam03879  84 AAKM 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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