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Conserved domains on  [gi|453231749|ref|NP_494316|]
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TransThyretin-Related family domain [Caenorhabditis elegans]

Protein Classification

DUF870 domain-containing protein( domain architecture ID 10531322)

DUF870 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF870 pfam05912
Caenorhabditis elegans protein of unknown function (DUF870); This family consists of a number ...
 30-137 1.41e-22

Caenorhabditis elegans protein of unknown function (DUF870); This family consists of a number of hypothetical proteins which seem to be specific to Caenorhabditis elegans. The function of this family is unknown.


:

Pssm-ID: 399125  Cd Length: 111  Bit Score: 85.83  E-value: 1.41e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453231749   30 VNLRCRSHAV-WYSHASMWEKDSLTPDDLLAYEG--STRNEKETRiYNLTSEDIWdefqSNAFEIRVHVSHNCSKNGV-- 104
Cdd:pfam05912   1 MKIRCDPSIGtWCGKLIVYEVDSLPTHDILKTDRfcTTEGEKEFK-YDFYPGGDF----SPHYEFNYQLSHNCTSDGKtr 75

                          90       100       110
                  ....*....|....*....|....*....|....
gi 453231749  105 -LQIRKLKRIPKFllldvKEEIIYFDIDVTNNGE 137
Cdd:pfam05912  76 cLKPKNTVDVSVN-----GEQYVEFNIEAYNNGE 104
 
Name Accession Description Interval E-value
DUF870 pfam05912
Caenorhabditis elegans protein of unknown function (DUF870); This family consists of a number ...
 30-137 1.41e-22

Caenorhabditis elegans protein of unknown function (DUF870); This family consists of a number of hypothetical proteins which seem to be specific to Caenorhabditis elegans. The function of this family is unknown.


Pssm-ID: 399125  Cd Length: 111  Bit Score: 85.83  E-value: 1.41e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453231749   30 VNLRCRSHAV-WYSHASMWEKDSLTPDDLLAYEG--STRNEKETRiYNLTSEDIWdefqSNAFEIRVHVSHNCSKNGV-- 104
Cdd:pfam05912   1 MKIRCDPSIGtWCGKLIVYEVDSLPTHDILKTDRfcTTEGEKEFK-YDFYPGGDF----SPHYEFNYQLSHNCTSDGKtr 75

                          90       100       110
                  ....*....|....*....|....*....|....
gi 453231749  105 -LQIRKLKRIPKFllldvKEEIIYFDIDVTNNGE 137
Cdd:pfam05912  76 cLKPKNTVDVSVN-----GEQYVEFNIEAYNNGE 104
 
Name Accession Description Interval E-value
DUF870 pfam05912
Caenorhabditis elegans protein of unknown function (DUF870); This family consists of a number ...
 30-137 1.41e-22

Caenorhabditis elegans protein of unknown function (DUF870); This family consists of a number of hypothetical proteins which seem to be specific to Caenorhabditis elegans. The function of this family is unknown.


Pssm-ID: 399125  Cd Length: 111  Bit Score: 85.83  E-value: 1.41e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453231749   30 VNLRCRSHAV-WYSHASMWEKDSLTPDDLLAYEG--STRNEKETRiYNLTSEDIWdefqSNAFEIRVHVSHNCSKNGV-- 104
Cdd:pfam05912   1 MKIRCDPSIGtWCGKLIVYEVDSLPTHDILKTDRfcTTEGEKEFK-YDFYPGGDF----SPHYEFNYQLSHNCTSDGKtr 75

                          90       100       110
                  ....*....|....*....|....*....|....
gi 453231749  105 -LQIRKLKRIPKFllldvKEEIIYFDIDVTNNGE 137
Cdd:pfam05912  76 cLKPKNTVDVSVN-----GEQYVEFNIEAYNNGE 104
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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