NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|17537295|ref|NP_494557|]
View 

F-box associated domain-containing protein [Caenorhabditis elegans]

Protein Classification

F-box associated domain-containing protein( domain architecture ID 10543976)

F-box associated domain-containing protein similar to Caenorhabditis elegans Skn-1 dependent zygotic transcript 15 protein that may have a role in embryogenesis

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
FBA_2 pfam07735
F-box associated; Most of these proteins contain pfam00646 at the N terminus, suggesting that ...
 197-264 9.13e-13

F-box associated; Most of these proteins contain pfam00646 at the N terminus, suggesting that they are effectors linked with ubiquitination.


:

Pssm-ID: 429626  Cd Length: 67  Bit Score: 62.59  E-value: 9.13e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 17537295   197 IQQLLSSNFDELTYFQmtPQSGLTLNDILLLNSKSVKLQSSILSMKEWNLVIKHLINGGCPILQSVTI 264
Cdd:pfam07735   2 FQKILIQNLDELTIGD--SSVWITLDDLLLINSKKIELDNSRLSLKDLNRFLKHWIKGSNPRLEYLEI 67
 
Name Accession Description Interval E-value
FBA_2 pfam07735
F-box associated; Most of these proteins contain pfam00646 at the N terminus, suggesting that ...
 197-264 9.13e-13

F-box associated; Most of these proteins contain pfam00646 at the N terminus, suggesting that they are effectors linked with ubiquitination.


Pssm-ID: 429626  Cd Length: 67  Bit Score: 62.59  E-value: 9.13e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 17537295   197 IQQLLSSNFDELTYFQmtPQSGLTLNDILLLNSKSVKLQSSILSMKEWNLVIKHLINGGCPILQSVTI 264
Cdd:pfam07735   2 FQKILIQNLDELTIGD--SSVWITLDDLLLINSKKIELDNSRLSLKDLNRFLKHWIKGSNPRLEYLEI 67
 
Name Accession Description Interval E-value
FBA_2 pfam07735
F-box associated; Most of these proteins contain pfam00646 at the N terminus, suggesting that ...
 197-264 9.13e-13

F-box associated; Most of these proteins contain pfam00646 at the N terminus, suggesting that they are effectors linked with ubiquitination.


Pssm-ID: 429626  Cd Length: 67  Bit Score: 62.59  E-value: 9.13e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 17537295   197 IQQLLSSNFDELTYFQmtPQSGLTLNDILLLNSKSVKLQSSILSMKEWNLVIKHLINGGCPILQSVTI 264
Cdd:pfam07735   2 FQKILIQNLDELTIGD--SSVWITLDDLLLINSKKIELDNSRLSLKDLNRFLKHWIKGSNPRLEYLEI 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH