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Conserved domains on  [gi|17531871|ref|NP_494669|]
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N-acetylgalactosaminide beta-1,3-galactosyltransferase [Caenorhabditis elegans]

Protein Classification

glycosyltransferase family protein( domain architecture ID 229488)

glycosyltransferase family protein may synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Galactosyl_T super family cl21608
Galactosyltransferase; This family includes the galactosyltransferases UDP-galactose: ...
 141-276 1.72e-05

Galactosyltransferase; This family includes the galactosyltransferases UDP-galactose:2-acetamido-2-deoxy-D-glucose3beta-galactosyltransferase and UDP-Gal:beta-GlcNAc beta 1,3-galactosyltranferase. Specific galactosyltransferases transfer galactose to GlcNAc terminal chains in the synthesis of the lacto-series oligosaccharides types 1 and 2.


The actual alignment was detected with superfamily member pfam01762:

Pssm-ID: 473923 [Multi-domain]  Cd Length: 195  Bit Score: 45.01  E-value: 1.72e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17531871   141 YPDIaystVYRNLRDTYDDLFRKSIFSLYYSyTSISKHFDWYLKTDDDTFVAMDHLREYL--NTLNPAEPLYLGYRL--- 215
Cdd:pfam01762  48 YGDI----VVVDFEDTYENLTFKTLTGLLWA-VSKCPSAKYIGKIDDDVYFFPDKLLSLLdnGNIDPSESSFYGYVMeeg 122

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 17531871   216 APFMNNG---YNS-------------GGSGYILSNAAmrmfVEQLYHNVRLCPYDRGEDRGMGRCLESVGITPSDTR 276
Cdd:pfam01762 123 PVIRNKKskwYVSpsdykcsryppyaSGPFYVLSRDA----AEKLLKASKHRRFLQIEDVYVGILANDLGISRVNLP 195
 
Name Accession Description Interval E-value
Galactosyl_T pfam01762
Galactosyltransferase; This family includes the galactosyltransferases UDP-galactose: ...
 141-276 1.72e-05

Galactosyltransferase; This family includes the galactosyltransferases UDP-galactose:2-acetamido-2-deoxy-D-glucose3beta-galactosyltransferase and UDP-Gal:beta-GlcNAc beta 1,3-galactosyltranferase. Specific galactosyltransferases transfer galactose to GlcNAc terminal chains in the synthesis of the lacto-series oligosaccharides types 1 and 2.


Pssm-ID: 426415 [Multi-domain]  Cd Length: 195  Bit Score: 45.01  E-value: 1.72e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17531871   141 YPDIaystVYRNLRDTYDDLFRKSIFSLYYSyTSISKHFDWYLKTDDDTFVAMDHLREYL--NTLNPAEPLYLGYRL--- 215
Cdd:pfam01762  48 YGDI----VVVDFEDTYENLTFKTLTGLLWA-VSKCPSAKYIGKIDDDVYFFPDKLLSLLdnGNIDPSESSFYGYVMeeg 122

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 17531871   216 APFMNNG---YNS-------------GGSGYILSNAAmrmfVEQLYHNVRLCPYDRGEDRGMGRCLESVGITPSDTR 276
Cdd:pfam01762 123 PVIRNKKskwYVSpsdykcsryppyaSGPFYVLSRDA----AEKLLKASKHRRFLQIEDVYVGILANDLGISRVNLP 195
 
Name Accession Description Interval E-value
Galactosyl_T pfam01762
Galactosyltransferase; This family includes the galactosyltransferases UDP-galactose: ...
 141-276 1.72e-05

Galactosyltransferase; This family includes the galactosyltransferases UDP-galactose:2-acetamido-2-deoxy-D-glucose3beta-galactosyltransferase and UDP-Gal:beta-GlcNAc beta 1,3-galactosyltranferase. Specific galactosyltransferases transfer galactose to GlcNAc terminal chains in the synthesis of the lacto-series oligosaccharides types 1 and 2.


Pssm-ID: 426415 [Multi-domain]  Cd Length: 195  Bit Score: 45.01  E-value: 1.72e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17531871   141 YPDIaystVYRNLRDTYDDLFRKSIFSLYYSyTSISKHFDWYLKTDDDTFVAMDHLREYL--NTLNPAEPLYLGYRL--- 215
Cdd:pfam01762  48 YGDI----VVVDFEDTYENLTFKTLTGLLWA-VSKCPSAKYIGKIDDDVYFFPDKLLSLLdnGNIDPSESSFYGYVMeeg 122

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 17531871   216 APFMNNG---YNS-------------GGSGYILSNAAmrmfVEQLYHNVRLCPYDRGEDRGMGRCLESVGITPSDTR 276
Cdd:pfam01762 123 PVIRNKKskwYVSpsdykcsryppyaSGPFYVLSRDA----AEKLLKASKHRRFLQIEDVYVGILANDLGISRVNLP 195
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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