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Conserved domains on  [gi|17534549|ref|NP_494924|]
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50S ribosomal protein L29 [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
hsdR super family cl36022
type I restriction enzyme EcoKI subunit R; Provisional
 13-87 9.35e-03

type I restriction enzyme EcoKI subunit R; Provisional


The actual alignment was detected with superfamily member PRK11448:

Pssm-ID: 236912 [Multi-domain]  Cd Length: 1123  Bit Score: 34.54  E-value: 9.35e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 17534549    13 PPVDNAKMLGELKLRLMHTKKGLLAIRGELQRRAEIWGAAQEEITALEKMASDAKERIQKQSDQKREERKLAAQK 87
Cdd:PRK11448  136 PPEDPENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAET 210
 
Name Accession Description Interval E-value
hsdR PRK11448
type I restriction enzyme EcoKI subunit R; Provisional
 13-87 9.35e-03

type I restriction enzyme EcoKI subunit R; Provisional


Pssm-ID: 236912 [Multi-domain]  Cd Length: 1123  Bit Score: 34.54  E-value: 9.35e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 17534549    13 PPVDNAKMLGELKLRLMHTKKGLLAIRGELQRRAEIWGAAQEEITALEKMASDAKERIQKQSDQKREERKLAAQK 87
Cdd:PRK11448  136 PPEDPENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAET 210
 
Name Accession Description Interval E-value
hsdR PRK11448
type I restriction enzyme EcoKI subunit R; Provisional
 13-87 9.35e-03

type I restriction enzyme EcoKI subunit R; Provisional


Pssm-ID: 236912 [Multi-domain]  Cd Length: 1123  Bit Score: 34.54  E-value: 9.35e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 17534549    13 PPVDNAKMLGELKLRLMHTKKGLLAIRGELQRRAEIWGAAQEEITALEKMASDAKERIQKQSDQKREERKLAAQK 87
Cdd:PRK11448  136 PPEDPENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAET 210
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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